LOCUS       XM_006230947            7067 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pecanex 3 (Pcnx3), transcript variant
            X1, mRNA.
ACCESSION   XM_006230947
VERSION     XM_006230947.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006230947.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006230947.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7067
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7067
                     /gene="Pcnx3"
                     /note="pecanex 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 27 ESTs, 1 long
                     SRA read, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 216
                     samples with support for all annotated introns"
                     /db_xref="GeneID:309167"
                     /db_xref="RGD:1305529"
     CDS             533..6658
                     /gene="Pcnx3"
                     /codon_start=1
                     /product="pecanex-like protein 3 isoform X1"
                     /protein_id="XP_006231009.1"
                     /db_xref="GeneID:309167"
                     /db_xref="RGD:1305529"
                     /translation="MGSQVLQILRQGVWASLTGGWFFDPHQSTFSNCFHLYVWIFLLI
                     FPFLLYMVLPPSLMVAGVYCLVVAVIFATIKTVNYRLHAMFDQGEIVEKRNSTMGEQE
                     EEAAQGESSLPRDPGVEMTVFRKVSSTPPVRCSSQHSVFGFNQVSELLPRMEDSGPLR
                     DIKELVREQGSNNVIVTSADREMLKLSSQENLIGDLPQTPPGVVPDPSLPSTDSSERS
                     PMAGDAVPWGGSSVADTPMSPLLKGSLSQELSKSFLTLTRPDRALVRTSSRREQCRGT
                     GGYQPLDRRGSGDPLPQKAGSSDSCFSGTDRETLSSFRSEKTNSTHLDSPPGGHAPEG
                     SDTDPPSEAELPASPDAGVPSDDTLRSFDTVIGAGTPPGQTEPLLVVRPKDLALLRPN
                     KRRPPMRGHSPPGRTPRRPLLEGSGFFEDEDTSEGSELSPASSLRSQRRYSTDSSSST
                     SCYSPESSQGAAGGPRKRRAPHGAEEGTAVPPKRPYGTQRTPSTASAKTHARVLSMDG
                     AGGDVLRAPLAGSKAELEAQPGMELAAGEPAMLPPEARRGPAANQPGWRGELQEEGAV
                     GGAPEETGQRECTSNVRRAQAIRRRHNAGSNPTPPASVMGSPPSSLQEAQRGRAASHS
                     RALTLPSALHFASSLLLTRAGPNVHEASNFDDTSEGAVHYFYDESGVRRSYTFGLAGG
                     GYENPVSQPGEQAANGAWDRHSHSSSFHSADVPEATGGLNLLQPRPVVLQGMQVRRVP
                     LEIPEFDLLDQDSLHESQEQTLMEEAPPRAQHSYKYWFLPGRWTSVRYERLALLALLD
                     RTRGIMENIFGVGLSSLVAFLGYLLLLKGFFTDIWVFQFCLVIASCQYSLLKSVQPDA
                     ASPMHGHNWVIAYSRPVYFCICCLLIWLLDALGTAQPFPPVSLYGLTLFSASFFFCAR
                     DVATVFTLCFPFVFLLGLLPQVNTCLMYLLEQIDMHGFGGTAATSPLTAVFSLTRSLL
                     AAALLYGFCLGAIKTPWPEQHVPVLFSVFCGLLVALSYHLSRQSSDPTVLWSLVRSKL
                     FPELEERSLETARAEPPDPLPEKMRQSVREVLHSDLVMCVVIAVLTFAISASTVFIAL
                     KSVLGFVLYALAGAVGFFTHYLLPQLRKQLPWFCLSQPVLKPLEYSQYEVRGAAQVMW
                     FEKLYAGLQCVEKYLIYPAVVLNALTVEAHTVVNHPDKFCLYCRALLMTVAGLKLLRS
                     AFCCPPQQYLTLAFTVLLFHFDYPRLSQGFLLDYFLMSLLCSKLWDLLYKLRFVLTYI
                     APWQITWGSAFHAFAQPFAVPHSAMLFLQALLSGLFSTPLNPLLGSAVFIMSYARPLK
                     FWERDYNTKRVDHSNTRLVTQLDRNPGADDNNLNSIFYEHLTRSLQHTLCGDLVLGRW
                     GNYGPGDCFVLASDYLNALVHLIEVGNGLVTFQLRGLEFRGTYCQQREVEAITEGVEE
                     DEGCCCCEPGHLPRVLSFNAAFGQRWLAWEVTASKYVLEGYSISDNNAASMLQVFDLR
                     KILVTYYVKSIIYYVSRSPKLETWLNHEGIAAALRPVRALGYADSDPTFSLSVDEDYD
                     LRLSGLSLPSFCAVHLEWIQYCASRRSQPVDQDWNSPLVTLCFGLCVLGRRALGTASH
                     SMSASLEPFLYGLHALFKGDFRITSPRDEWVFADMDLLHRVVAPGVRMALKLHQDHFT
                     SPDEYEEPAALYDAIAANEERLVISHEGDPAWRSAILSNTPSLLALRHVMDDASDEYK
                     IIMLNRRHLSFRVIKVNRECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINS
                     SCDQPLGYPIYVSPLTTSLAGSHPQLRALWGGPVSLGAIARWLLRSWERLHKGCGAGC
                     NSGGNVDDSDCAGGGGLTSLSNNPPLAHPTPENTAGSSEQPLPPGPSWGPRPSLSGSG
                     DGRPPPLLQWPPPRLPGPPPASPAPTEGPRPSRPPGPGLLNSEGPSGKWSLGGRKGLG
                     GPDGEPASGSPKGGTPKSQAPLDLSLSPDVSSEASPARTTQDIPCLDSSVPESCTPSG
                     APGDWPVPVEERESPAAQPLLEHQY"
ORIGIN      
        1 catgcgccag tgcaggctgg cagctcgcgg ctccttcttc cggcctcccc tttgcgccgg
       61 caccggtaga agcggggcga acgcagaacc ccaagctttt gacctgcgac cccggaagtg
      121 gacctcaggg tcccaaggct ttctccggtc cggagccaag ggacctatca ctggcactcc
      181 gagagcacct attccacgcc cacctctgga tgccgccgac gggtgcccag cccgtgccct
      241 gcgcctgcct tcaggcttgg ccccttacaa cagttctggg ccaccggagg gggcccaggc
      301 cccgcctctg atgccagtcc cacctctgta ttccggcctg atcggctgac tgcctgggcc
      361 ggccccgccc cctgcctgtg ccctcaccct gccaatcccc tcccccgttg ggggaggcca
      421 tggcgtgaaa tctaagtcgg accccgggac cctcgggcgc cagcggggca tgggccgggg
      481 gccgccccca tgagggtccc gggaggaggg cgtgcgcagc agcggctggg ccatggggtc
      541 tcaggtgttg cagatcctgc gccagggtgt gtgggcctcg ctcactggcg gttggttttt
      601 cgatccgcat cagagcacct tctccaactg cttccatctc tatgtctgga tcttcttgct
      661 catctttccc ttcttgctgt acatggtcct gccccccagc ctgatggtgg ctggagtgta
      721 ctgcctggtg gtagctgtca tctttgctac catcaagact gtgaactatc gcctgcatgc
      781 catgttcgac cagggcgaga ttgtggagaa acgcaactct accatggggg agcaggaaga
      841 agaggctgcc cagggggaga gcagtcttcc cagagaccct ggtgtagaga tgacagtgtt
      901 ccggaaagtg agttccacac cccctgtacg ctgcagttcc cagcattctg tttttggctt
      961 caaccaggtt tcagaattgc tgccccggat ggaggattct gggcccctca gagacatcaa
     1021 ggagctggta cgggagcagg gcagcaacaa cgtgattgtg acctctgccg atcgggagat
     1081 gctgaagctc agctctcagg agaacctgat tggagacctc ccccagacac cccctggggt
     1141 tgtcccagac ccctctctcc ccagtacgga ttcctccgag cgttctccca tggctggaga
     1201 tgctgttccc tggggtggga gcagtgtggc tgacactccc atgagcccct tactgaaagg
     1261 gagcctcagc caggagctaa gcaagagctt tctgaccctg acccgccctg accgggccct
     1321 agtgaggacc agtagtcggc gggaacaatg tcggggaact ggaggctacc agcccctgga
     1381 ccggaggggc tcaggtgacc ccctgcccca gaaagctggg tcttcagatt cctgcttcag
     1441 tggtactgac agggagactc tcagcagctt caggagtgag aagaccaact ctacccatct
     1501 ggacagtccc cctggtgggc atgcccctga gggcagcgac acagaccctc cttctgaggc
     1561 tgagctccct gcctctccag atgctggggt cccctcagat gatacacttc gttcctttga
     1621 cacagtcatt ggggcaggga caccaccggg ccaaactgag ccgctcctgg tcgtgcggcc
     1681 caaggacttg gccctgcttc ggcctaacaa acggcggccc cccatgcgag gacactcccc
     1741 acctggtcgt accccaagac ggcccttgct ggagggctca ggcttctttg aagatgaaga
     1801 taccagtgaa ggtagtgagc tgagcccagc atccagtctc cggtctcagc gccgctatag
     1861 caccgatagc tcctcatcta cttcttgcta ctcccctgag agctcccagg gtgcagcagg
     1921 gggtcctcgg aagcggcggg cccctcatgg ggctgaagaa ggaactgctg tgccccctaa
     1981 gagaccctat gggacccagc ggacgcccag tactgccagt gccaaaactc atgcacgtgt
     2041 gttgagcatg gatggggcag ggggtgatgt cttaagggct cccctggctg gctccaaggc
     2101 cgaactggag gcccagccag gaatggagct ggctgccggt gagcctgcta tgctgcctcc
     2161 tgaagcccgt aggggacctg ctgccaacca gcctggctgg cggggggaac tgcaggagga
     2221 aggtgctgtg gggggagcac ctgaggaaac aggtcagcgg gagtgcacaa gcaatgtgag
     2281 gagggctcaa gccatccgga gacgacacaa tgcaggcagc aaccctacgc cgccagcctc
     2341 tgtcatgggc tcaccaccta gcagcctaca ggaggctcag cggggccggg ctgcttccca
     2401 ctcccgggca ctgactctgc cctctgctct gcactttgcc tcttccctgt tgctcacccg
     2461 agctggcccc aacgtacatg aagccagcaa ctttgatgac acctctgagg gtgctgtgca
     2521 ctatttctac gatgagagcg gtgtacggcg gtcatatacc tttggcctag ctggaggtgg
     2581 ctatgagaac cctgtgagtc agccagggga gcaggcagcc aatggagcct gggaccgcca
     2641 ctcacattcc tccagcttcc actcagctga tgtgcctgaa gccacaggag gcctgaacct
     2701 gttgcaaccg aggccagtgg ttcttcaggg tatgcaggtg cgcagggtgc ccctggaaat
     2761 cccagagttt gacctgctgg accaggactc cctgcacgaa tcccaggagc agacattgat
     2821 ggaagaggca ccaccccggg cccagcacag ctacaagtac tggtttcttc ctggccgttg
     2881 gacctctgtg cgctatgagc ggctggccct gctggctctg ttggaccgga cacgagggat
     2941 aatggagaac attttcggtg ttggattgag tagcctggtt gccttcctgg gatacctgtt
     3001 gctgctcaag ggcttcttca ctgacatctg ggtcttccag ttctgtctgg tcatcgcctc
     3061 ctgtcagtac tccctgctca agagcgtgca gcctgatgca gcatctccca tgcatggcca
     3121 caactgggtg attgcgtaca gccggcctgt ctacttctgt atctgctgtc tactcatctg
     3181 gctgttggat gccctgggga ccgcccagcc cttcccaccc gtctccctgt atggcctcac
     3241 gctcttctct gcctctttct tcttctgcgc ccgagatgtg gccactgtgt tcaccttatg
     3301 cttccccttc gtcttcctcc tgggcctcct gccccaggtc aacacctgcc tcatgtacct
     3361 cctggagcag atagatatgc acggctttgg gggcacagct gccaccagcc cgctcactgc
     3421 ggtcttcagc cttacccgaa gcctgctggc cgctgccctg ctttatggct tctgccttgg
     3481 tgccatcaag acaccttggc cagagcagca cgtccctgtc ctcttctcag tcttctgtgg
     3541 cctcctggtg gcactgtcct accatctgag ccggcagagc agtgacccca ccgttctctg
     3601 gtctctcgtt cggagtaagc tcttccctga gctagaggag cggagcctag agacagcccg
     3661 tgcggaaccc ccagacccac tgccagagaa gatgcgccag tcagtgcgtg aagtcttaca
     3721 ctccgacctg gtgatgtgtg tggtgattgc tgttctcacc tttgccatca gtgccagcac
     3781 cgtcttcatt gccctgaagt cagttctggg cttcgtgttg tatgcactgg caggagctgt
     3841 gggcttcttc acacactacc tgctgccgca gctccgcaaa cagctcccct ggttctgcct
     3901 ctcgcagcct gtgctgaagc cactggagta cagccagtat gaagtgcgag gtgctgctca
     3961 ggtgatgtgg tttgagaagc tctatgctgg ccttcagtgt gttgagaagt acctcatcta
     4021 ccctgccgtg gttctcaacg ctctcacagt ggaggcccac acagttgtca accacccaga
     4081 caaattctgc ctctactgcc gggccttgct gatgactgtg gcaggactga agctgctgcg
     4141 ctcggccttc tgttgcccac cccagcagta cctgactttg gccttcaccg tcctgctctt
     4201 ccactttgac tacccgaggc tctcacaggg cttcctgctt gactacttcc tcatgtccct
     4261 gctctgcagc aagctttggg acctgttgta caagcttcgt tttgtgctga cctacattgc
     4321 accatggcag atcacctggg gctccgcctt ccatgccttt gcccagccct tcgctgtacc
     4381 acactcagct atgctgttcc tccaggccct gctctcaggg ctcttctcaa caccactcaa
     4441 ccccctgctg ggcagcgcag tcttcatcat gtcctacgca aggcccctca agttctggga
     4501 gagggactac aacactaaac gtgtggatca ttccaacact cgcctcgtga cacaactgga
     4561 taggaaccca ggcgctgatg acaacaacct caactctatc ttctatgagc acttgacacg
     4621 ctcgctgcag catacattgt gtggggatct ggtgctgggc cgctggggca attatggccc
     4681 tggagactgc tttgtcctgg cctctgacta cctcaacgca ctagtgcacc tcatcgaggt
     4741 tggcaatggc ctcgtcacct tccagcttcg tggccttgag ttccggggca catactgcca
     4801 gcagcgtgag gtggaggcca tcacggaagg tgtggaggaa gatgagggct gctgttgctg
     4861 tgagcctggt cacctgcccc gggtcctgtc cttcaatgct gcctttgggc agcgctggct
     4921 ggcctgggag gtgacagcca gcaagtatgt gctggaaggc tacagcatca gtgacaacaa
     4981 cgcagcctcc atgctgcagg tgtttgacct ccgcaagatc ctcgtcacct actatgtcaa
     5041 gagcatcatc tactatgtga gccgctctcc aaagctagag acctggctga accatgaggg
     5101 catcgccgct gctctacggc ctgtgcgagc ccttggttat gcagactctg accctacctt
     5161 ctcactgagt gttgatgaag actatgacct tcgactgtct ggcctctcgc tgccatcctt
     5221 ctgcgctgtt caccttgagt ggatccagta ctgtgcctct cggcgcagcc agcccgtgga
     5281 ccaggactgg aattcaccat tggtcacact atgttttggc ctgtgtgttc tgggtcgccg
     5341 ggccctggga acagcctcac acagtatgtc tgccagcctg gagcccttcc tctatggcct
     5401 gcatgccctg ttcaaggggg acttccgcat cacctcccct cgtgatgagt gggtctttgc
     5461 ggacatggac ctgcttcacc gagtggtggc ccctggggtt cgcatggccc tcaagcttca
     5521 ccaggatcat ttcacatctc ctgatgagta tgaggaacca gcagccctgt atgatgccat
     5581 tgcagccaat gaggaacggc tagtcatctc acatgagggg gaccctgcct ggcgcagcgc
     5641 catccttagc aacacacctt ccctgctggc actgcgccac gtcatggacg atgcttctga
     5701 tgagtacaag atcatcatgc tcaaccggcg tcacctcagc ttccgagtca tcaaggtaaa
     5761 ccgagagtgc gtgcgtgggc tgtgggctgg acagcagcaa gagctggtgt tcctgcgcaa
     5821 ccgcaaccct gagcgaggca gcatccagaa cgccaagcag gcactccgca acatgatcaa
     5881 ttcctcctgt gaccagccgc tgggctaccc catctatgtg tcaccgctta ccacatctct
     5941 ggctggtagc cacccccaac tgcgggcgct gtggggtggt cctgtcagcc tgggtgccat
     6001 tgcccgatgg ctcttgcgca gctgggagag acttcataag ggctgtggcg cgggctgtaa
     6061 cagcggtggg aatgtggatg actcggactg tgctgggggt ggcggcctga cctccctcag
     6121 caataacccc cccttggcac accctacgcc tgagaataca gcaggcagca gtgaacagcc
     6181 cctcccacca ggtcctagct gggggccacg gccttccctc agtggctctg gtgatgggcg
     6241 gccccctcct ctgctgcagt ggcctccccc tcggctccct ggaccaccac ctgcttcacc
     6301 tgctcccact gagggtcccc ggccctcaag acctcctggc cctggtctcc tcaattctga
     6361 ggggcccagt gggaagtgga gtctgggggg tcggaaggga ctgggaggac ctgatgggga
     6421 gccagcctca gggagcccca aaggaggcac ccccaaatct caggcccctc tagacctcag
     6481 cctcagtcct gatgtcagct ctgaggcctc acccgccaga acaacccagg acattccttg
     6541 cttggacagc agtgttcctg agagttgcac accctccggc gctccaggtg actggcctgt
     6601 ccctgttgag gaacgagaga gtccagccgc ccagcccttg ctggaacatc agtactgagt
     6661 agctgtcctc tgctggatct catcccagga ctcaatatcg cagactctgc tggaccacag
     6721 gactgattgg ctttggctct ggtgtctgca ccctgatatc tggctactcc agtgtcagaa
     6781 ctgagtgacc agacttctcc ctgatccgtg gcctggatgc cccaaattga ggcagcagcc
     6841 tcctagccag gccataagag ccaaacccat gggctggtcc ctctttgagc ccatggtcag
     6901 gactgacttt gccctaggcc ttgcactgcc tacaaggctg gcctccttag cctgggcctg
     6961 gggcctgaca cgtggcaagg gtgggttcat tcgttctttt gtcatttttc tttccttttt
     7021 ttctgtgctt cagagacacc aaattaataa cactattttt gattttg
//
