LOCUS       XM_039099211            7194 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pericentrin (Pcnt), transcript variant
            X10, mRNA.
ACCESSION   XM_039099211
VERSION     XM_039099211.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099211.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7194
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7194
                     /gene="Pcnt"
                     /note="pericentrin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 18 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:309692"
                     /db_xref="RGD:1595865"
     CDS             630..6728
                     /gene="Pcnt"
                     /codon_start=1
                     /product="pericentrin isoform X10"
                     /protein_id="XP_038955139.1"
                     /db_xref="GeneID:309692"
                     /db_xref="RGD:1595865"
                     /translation="MLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISER
                     AGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAETSSVCEISSHVCES
                     FFMSPENTQECEQPIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRD
                     EEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEES
                     EQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAGTPVSAGRED
                     AALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTT
                     LKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDS
                     QCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQM
                     AQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEV
                     IEKLQSELSLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFG
                     QLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATL
                     KAKEAIIVQRDLEIDAVNKWKVSHSVELEALLLALAHFQHAVEQQTSATPDEPPKLQQ
                     LLVQCARLSHQLHVLYRRFLRCQVELGQHQPRVASVGCADPPAEAQGKRDGELEQDGV
                     SSGLALAPHSLVAQAKEEQPEDCHLGNTSLRAQLRQLEEKLDPQAHSVAFRDTSMETC
                     KLQQPNPLENGSSNHCHNGEESRPSPPNDVPAKTTWDVIGVIKNQDLLAQIEMPDSPT
                     PEKLASQGGAFSSQASVHGASLLPEEAEPQKDPVRALDLSSWSSPEVLRKEPSLEPQH
                     SLPLTPGVGTVSLHSVDISSPDWTDPLLQADVSGLLCYPGKSATGQAPLWVVAPSAEK
                     HHVERTATEKDVEDFIVTSFDSQESLTSPSHELARRSDGSGKSDGPDIAAMLTLGSEG
                     SETPTTDLVAATTGPFSRRFVQSPGAMREKEVHAKQMKALLQMVFDESHQILALSESQ
                     DSSSALSKGEPRDPLDGVPRDRQALSEGTSDRGEKEALGTHLTWSEELLQAIQEVFAR
                     EQENAELQPRPYSSDLGDYNSLVKKLEKVIQEQGDLQKVREHACLPDRSSLLAEIQAL
                     RAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANDLQ
                     KTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRYG
                     HVTWSYSGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQRE
                     GQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKG
                     QLSELRKSLEAERSRSLELSEALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKA
                     EKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHK
                     QELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVK
                     EKLRELELQRQRDEHKIEQLQRLVRELRWKEEAPGGNGPCRGSPCLGSLERDQFQEQQ
                     QELEKIRQQLLCAAGFLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSMPT
                     SFQKKMAAELQVQLMNELLSDNDALTKAVGMATREKAELCKTVSRLEKTLKHHTQKGC
                     ILNRQSKTPLKQDGMDLQSSLPHSDPEWHPQTTGGDTNTCNIKMEKLYLHYLRAESFR
                     KALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKVTASRPFTRFRTAVRVV
                     IAVLRLRFLVKKWQEVDRKGALIHHSRSTRHGHRTSQRQNSPSGTRASLPTRDVSSGH
                     TKDSRHSPKCSATSLGKGRSTSSTSSRLERSLTASQDPEQSLTEYIHLLEMTQQRLAG
                     LPPDAPQKACPQKIKQ"
ORIGIN      
        1 tcgttcttgc gacagtcagc cttttaccct ttgccctgga ttcgtgcggg caggtcagta
       61 agcacagtca gtcttgtcgc atgatcagac ttgcttggct ttgagacatt tcctccagtg
      121 tcttctcaga gtgctcccca ggatgccagg gctggcatcc caaaatagca gggacgcgct
      181 gtccttactg cctcgcaggc tctggcgagc cacaaatatc ttgcacctgt ctgcagagcc
      241 aagcctcttc tcagcagaac actcacggtt gggcgaggta ttttccggat taccgccatt
      301 tgcagtttgg gaaaatcatg ctctgaaaac gtaagctggg tcttcttcag atagaagggc
      361 gtgtcccgtg aagaagtctc cctggccatt gaccctaagc aagaagcgtg gtccagaagt
      421 agctacagag gggccagtgc tcactgtcca gggctgttcc atatgttctt gtataaaacc
      481 cagacctgtt cgcaggctaa taacccttgg acgtggtgag ggaccaggtc ttcttgctga
      541 gccgggagtt agaggagtgc cgaggggagc tggagcagct gcagcagagg cgcgagcggg
      601 agaaccagga gggcgccact ctgatctgca tgctcagggc tgacgtggac ctggctcaga
      661 gcgaagggaa agccctccga gatgccctga ggagacttct tgatctgttt ggggaaacgc
      721 tgaaggcagc tgtgacccta aagagccgga tcagtgagcg tgcggggctc ctcctggacc
      781 atgaagatgc tgtagataca agcggtgccc agttagcagc tgcagccctt ggcgaaatgt
      841 ggcccgacga gggtctacta gacatagaca gaaccttgcc agaaggggca gagacatcgt
      901 cagtgtgtga aatcagcagt cacgtgtgtg agagcttctt tatgagcccc gaaaacaccc
      961 aggagtgtga gcagccgatt cggaaagtct accagagcct cagcaccgcc gtggagggcc
     1021 tcctggacat ggccctggac tcctccaaac agctggagga cgcccgccaa ctccatcgct
     1081 gtgttgagaa agagttccgg cacagggatg aggagatggc ccaggctgtg cagaagcagc
     1141 aggagctgct ggaacgcctg agggaggaga gtgcggccaa ggacaggctg gcactggagt
     1201 tgcacacggc tgagggtctc cttgaaggct tcaaggtgga gaaagcagat ctgcaggagg
     1261 cgctgggcaa gaaggaggag tcggaacagc agctgattgt ggaactagag gatctgcgaa
     1321 agcagctgca gcaggcttcc cgggagctgc ttactctgaa ggaggagaac tcggtcctgt
     1381 ggaaccagaa ggaaactttc accaatgaag caaaagaaag agaagctggc acccctgtct
     1441 ctgcaggacg cgaggacgca gcgctgcaga aggaggtgga atctcttacc agagaccagt
     1501 gggagtcccg gaagcagtct gagaaggacc gcgccaccct gctctctcag atgcgtgtct
     1561 tggagtctga gttggaggac cagctagtgc agcaccgggg ctgtgcccag ttggctgagg
     1621 aagtgaccac cctgaagcag caactggcca ccctagacaa gcacttacgt agccagcgcc
     1681 agttcatgga tgagcaggct gctgagcggg agcacgaacg agaagagttc cagcaggaga
     1741 tcaaatggct ggaggggcag ctccgccagg ccacccggcc tcggcctccg gggccccggg
     1801 acagtcagtg cgccaagcta gatgaggagg tggaattgtt acaagagaaa ctgagagaaa
     1861 aattggatgg gtttaatgaa ttggttataa agaaagatct tgcagatcaa cagttattaa
     1921 tccaagagga agagattaag catcttgagg agacaaatga gaacattcaa agacagatgg
     1981 cccagctcca ggaagaacta gaaaaacaga gaagaagcac ggaagagtta gaggttgtga
     2041 acagcaggaa ctctgagatc gaagagctga aagccattat cgaacacttg caggaaaacc
     2101 aggaacaatt acagaaggcc aaagcagagg aaattgagca gttgcatgaa gtcatcgaga
     2161 agctgcagag tgagctgagc ctcatggggc ccacggtgca tgaaatgagt gaccttccgc
     2221 ctggcagcct ccacacggag ctgtcctgcc tccaggcgga aggcatgggt ggccaggccc
     2281 tgcacaatga gctgcaagct gcacaggcag ccaagggcgc ctttggccag cttctggcag
     2341 accatggaca cagccaggcc ctggaggcac tgcaggagcg gctgcaggat gcagaggcgg
     2401 cggctgccag acacctgact gagctagaac actgtgtggc cctcagacag gctgaggtgg
     2461 aagccatggc ctctcggatc caagagtttg aagctaccct gaaggccaag gaagcaatca
     2521 tcgtgcagag agacttagaa attgatgccg tgaacaagtg gaaagttagc cattccgtgg
     2581 agctggaggc cctccttttg gcgttggccc acttccagca cgctgtggag cagcagacct
     2641 ctgccacccc agatgagcca cccaagctac agcagctgct tgtgcagtgc gctcgcctca
     2701 gccaccagct acacgtgctg taccggcgtt tcctcaggtg ccaggtggag ttgggccagc
     2761 atcagcctcg tgtagcgtct gttggctgtg cggaccctcc tgcagaggca cagggtaaac
     2821 gagatggtga actggaacag gacggagtca gcagtgggct agccttggct ccccacagcc
     2881 tggttgctca ggctaaggaa gagcagcccg aggactgtca cctgggcaac accagtctca
     2941 gagcccagct gagacaactc gaggagaaac tggaccccca ggcacattcc gtggccttca
     3001 gggacaccag catggaaact tgtaaattgc agcagccaaa cccgttggaa aatggttcaa
     3061 gtaatcattg tcataacggt gaagagagca ggccatcacc tcccaatgat gtacctgcta
     3121 aaaccacgtg ggatgtgatt ggtgttatta aaaatcagga tttgttggcc cagattgaaa
     3181 tgccagattc ccccactcca gaaaagttag catcacaagg gggagctttc tcctcccaag
     3241 ccagtgtgca cggtgcctcc ctcctccctg aggaggctga gccccagaag gacccagtga
     3301 gggcgctgga cctgtcttcc tggagctccc ccgaggttct ccggaaggag ccatccctgg
     3361 agcctcagca cagcctgccc ctgacaccgg gcgtgggtac agtgagcctg cacagtgtgg
     3421 acatctcctc accagactgg acagacccac tgctgcaggc tgatgtgtca gggctgcttt
     3481 gttacccggg caagtctgca acaggccagg ccccgctgtg ggtggtggcc ccttcggctg
     3541 agaagcacca tgtggagagg acagccacgg agaaggacgt cgaagacttt atcgtaacat
     3601 cttttgattc tcaagaatca ttaacatccc cttctcatga gttagcgaga agaagcgatg
     3661 ggagcgggaa aagtgatggc ccagacattg ctgcgatgtt gaccctgggc tcagaaggat
     3721 ccgagactcc caccactgat ctagtagctg ccactactgg tcctttctct agaaggtttg
     3781 tccagtcacc aggagcaatg agggagaagg aggtccatgc aaagcaaatg aaggctttgc
     3841 tgcagatggt gtttgatgag agtcaccaga tactggcctt gtcagaaagc caggactcct
     3901 ccagtgcact gagcaagggt gaaccacgtg accccctgga tggcgtccca agggacaggc
     3961 aggccctttc agaggggaca tctgacagag gagagaagga agctttggga acgcacctta
     4021 cgtggagtga ggagcttttg caggccatcc aggaagtgtt tgccagggag caggagaatg
     4081 ctgagctgca gcctagacct tacagctcag acctcggaga ctataactcc ctggtcaaga
     4141 agctggagaa ggttattcaa gagcagggag acctgcagaa ggtccgggag cacgcgtgtc
     4201 tgccagacag gagcagcctg ctagccgaga tccaggccct gcgcgctcag ctccgaatga
     4261 cacacctaca gaaccaagag aagctgcagc agctgtgtgc ggccttgaca agcacagagg
     4321 cccgagggag ccagcgagag caccagctac gcaggcaagt cgagctgttg gcttacaaag
     4381 tggagcagga aaaatgcata gcaaatgact tacagaaaac cttgagcaaa gagcaggagg
     4441 cagcgagtga cgtgcgcaag cgtctgatgg tggagcaggg tgccgtccag gacctcaagt
     4501 ccgagctgca cgcctgtaag caggagaaca cgaacctgct ggagtcgctg gacaaggtgc
     4561 agcaggaagt cctgcggctc aggtatggcc atgtgacgtg gtcctacagt ggaacttcat
     4621 ctgcttcggc cggcagagcc gtgctggacg ggaaggagaa cgagctgaag gtcgtcctgg
     4681 aagagctgga gtgtgagcgt ggaaaggggc aggtcctcca ggcccagcag gaggagcagc
     4741 agctgcggca cctgcagagg gagggccaga gctcaagggc cctggaggag ttgaaaatat
     4801 ccttggagaa gcagctggct caaaacaatc aactgtgtgt ggctttaaaa cacgagcggg
     4861 cggccaagga caacctgcag aaggagctgc agattgaggc ctcgcgctgc gaagcgttgc
     4921 tggcccagga gaaaggccag ctctccgagc tgcggaagag cctagaggcc gagcggagcc
     4981 gctcgctgga gctctctgag gccttacagc atgagcggct cttgacggag cagctgagcc
     5041 gcaacgcgca ggaggcctgt gcccgccaag atacccaagc gcagcatgct ttactgcgca
     5101 agctgaaggc agagaaggct cgcgcgttag agctggaggc catgcttgag aaggtgcaga
     5161 agcaggctgc ccacacacag cagcagctgg aggctcaggc tcaggagcgc tgcctggagc
     5221 tccggagaga gaaggaggta agtggcaacc tgaggtcagc cgtggacgcc ttgcagaccc
     5281 acaaacagga gctgggatgc tgtctggaga gagagaggga gaaggcagcg tggttacagg
     5341 cagagttaga acagttgtcc gccagagtga aacagcaaga ggcacgccag gacgagaaga
     5401 ggatggacag gaggtcgagc cgtgaagacc tggacaagag gaagtggcag agagtcaagg
     5461 agaagctgcg agaattggag ttgcagcgcc aacgtgatga acacaagatt gagcagcttc
     5521 agcggttagt gagagagctg aggtggaaag aggaggcgcc tggaggaaac ggcccttgcc
     5581 ggggctcccc ctgcctcggt tctctggaga gagaccagtt ccaggagcag caacaggaac
     5641 tggagaagat acggcaacag ctactgtgtg cagccgggtt cctcacaagc tttactaacc
     5701 acacagtaga caggacaatt aaagattgga cgtcatcaaa tgagaaggcg gtgtcatcct
     5761 taatgcgcac gctggaggag ctgaagtctg aactgagcat gcccacctcc ttccagaaaa
     5821 aaatggctgc agaactacag gtccagctca tgaatgaact gctgagcgac aacgatgccc
     5881 tcacaaaagc cgtgggcatg gccacccgag agaaagctga gctgtgcaag accgtctccc
     5941 ggctcgagaa gaccctgaag catcacacgc agaagggctg cattcttaat aggcaaagca
     6001 agactccatt gaagcaagat gggatggacc tgcagagctc cctaccgcac tcagacccag
     6061 agtggcaccc gcagactaca ggcggggaca caaatacctg caatatcaaa atggagaagc
     6121 tgtacctgca ctatctgagg gcagagagct ttaggaaagc tctgatctat cagaagaagt
     6181 acctcttgct gctgattggt gggttccagg actctgagca ggagaccctc tccatgatcg
     6241 cccatttggg ggtcttccct tccaaagccg ataagaaagt caccgcatca cgccccttca
     6301 ccaggttccg cactgctgtt cgggtggtca tcgcagttct gaggttacga tttctggtta
     6361 agaaatggca ggaagtggat cggaagggag cgctgataca ccacagcaga agcacccgcc
     6421 acggacatcg aacctcccag agacaaaatt ctccgtcagg aactagagca tctctgccaa
     6481 ctcgagacgt ttcctcaggg cacaccaagg actctcggca cagccccaag tgttcagcca
     6541 cctcgctggg gaagggaaga tcaacttcgt caacaagttc aaggctcgaa agatccctga
     6601 ctgcttctca agatcccgag cagtccttga cagaatacat tcatctttta gaaatgaccc
     6661 agcaaagact tgcgggactg ccaccagatg ctcctcagaa agcctgcccc cagaagatta
     6721 aacaatgaat aaagttcttc tggctattaa cctttgacat ttctatttga ggaaagatgg
     6781 tttttttcct aaggaaagct catgatatgg cctgggacac acttcgagag tagtgacgcc
     6841 agcctctagg agcccccgag agctcctacc tccacaccct gctgaatggc ggggagagcc
     6901 cgctgtgctc cttcccaccc agtaagcagt gtccatgctg ggtcctgtgc ctgatgacgg
     6961 agccacctgc gtcctctgtg gcggaagatg cttattttct tagcatgtca gggtgggcag
     7021 gtcagtggaa tgaacacata gcaaggaata cattttaaag actgttctct gatgaaatga
     7081 tggatggatg gacgctcttt gtgttttttg ttttttaaat ccgttcagtt tattcttttt
     7141 tgttggcaaa acaaataaaa tgatgtcaca cttgcttctc atggctacaa ccat
//
