LOCUS       NM_001107810            3547 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus protein-L-isoaspartate (D-aspartate)
            O-methyltransferase domain containing 2 (Pcmtd2), mRNA.
ACCESSION   NM_001107810 XM_001056609 XM_230971
VERSION     NM_001107810.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3547)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474066.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_230971.3, XM_001056609.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ211587.1, SRR8487231.143940.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3547
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q43"
     gene            1..3547
                     /gene="Pcmtd2"
                     /gene_synonym="RGD1305684"
                     /note="protein-L-isoaspartate (D-aspartate)
                     O-methyltransferase domain containing 2"
                     /db_xref="GeneID:311726"
                     /db_xref="RGD:1305684"
     exon            1..80
                     /gene="Pcmtd2"
                     /gene_synonym="RGD1305684"
                     /inference="alignment:Splign:2.1.0"
     exon            81..262
                     /gene="Pcmtd2"
                     /gene_synonym="RGD1305684"
                     /inference="alignment:Splign:2.1.0"
     exon            263..593
                     /gene="Pcmtd2"
                     /gene_synonym="RGD1305684"
                     /inference="alignment:Splign:2.1.0"
     CDS             287..1366
                     /gene="Pcmtd2"
                     /gene_synonym="RGD1305684"
                     /codon_start=1
                     /product="protein-L-isoaspartate O-methyltransferase
                     domain-containing protein 2"
                     /protein_id="NP_001101280.2"
                     /db_xref="GeneID:311726"
                     /db_xref="RGD:1305684"
                     /translation="MGGAVSAGEDNDELIDNLKEAQYIRTDLVEQAFRAIDRADYYLE
                     EFKENAYKDLAWKHGNIHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLIL
                     GPFGVNHGVELHSDVTEYAKQKLDVFIRTSDSFDKFDFCEPSFVTGNCLEIAPDCCQY
                     DRVYCGAGVQKEHEEYMKNLLKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAP
                     LVQPCRSESGQSRLVQLPPPAVRSLQDLARLAIRGSIKRAMRQEATRGGGLKSTPMFK
                     RRRVRRRRMETIVFLDKEVFASRISNPSDDTSCEDAEEDRREVAERTLREAKPEPPVN
                     FLRQRVLRLPLPDPLKYYLLYYREK"
     exon            594..696
                     /gene="Pcmtd2"
                     /gene_synonym="RGD1305684"
                     /inference="alignment:Splign:2.1.0"
     exon            697..868
                     /gene="Pcmtd2"
                     /gene_synonym="RGD1305684"
                     /inference="alignment:Splign:2.1.0"
     exon            869..992
                     /gene="Pcmtd2"
                     /gene_synonym="RGD1305684"
                     /inference="alignment:Splign:2.1.0"
     exon            993..3547
                     /gene="Pcmtd2"
                     /gene_synonym="RGD1305684"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tacagcggct gcggtccgtg cgaagcgaca gaagcgtccg aagaacccga ggctaaaccc
       61 gagggccgct gagcgccgag gttcttaaat aatccatgct ggcttggagc tcactgaaga
      121 tgactttgaa ctcctgagca ggagctgttt tgattcagaa agtctaatct tcctgtggtt
      181 tggtagtctt ttcttcagca gtttatatca gcatcaccat cttttacgaa ataaaaccat
      241 tagtttggaa aagtcacctg agtcctgctt ggttgtaatc tggaacatgg gcggtgctgt
      301 gagtgctggt gaggacaacg atgagctcat tgataatttg aaggaagccc agtacatccg
      361 gacggactta gtagagcagg ctttccgagc tattgatcga gcagattatt atcttgaaga
      421 atttaaagaa aatgcgtaca aagacttggc gtggaaacat ggaaacattc atctctcagc
      481 cccatgcatc tactcggagg tgatggaggc tctggatctg cagcctgggc tctcatttct
      541 gaatttgggc agtggtactg gctacctcag ctccatggtg gggctcattc taggtccttt
      601 tggtgtgaac catggggtgg agcttcattc agatgtgact gagtatgcga agcagaaact
      661 ggacgtcttc atcaggacca gcgacagttt tgacaaattt gacttctgtg aaccttcctt
      721 tgtaactggc aattgcctgg agattgctcc agattgttgt cagtatgacc gtgtctattg
      781 tggggctggt gtgcagaaag aacatgaaga gtacatgaaa aatcttctca aagtcggagg
      841 gatcctggtc atgcccttgg aagagaagtt gaccaagata acacgtacag gcccttctgc
      901 ttgggaaaca aaaaagattc tggctgtttc ctttgcccct ctggtccagc cttgccgttc
      961 ggagtcagga cagtccagac ttgtccagct accaccacca gccgtgcgca gcctgcagga
     1021 cctggcccgg cttgctatcc gaggcagcat caagagggct atgcgccagg aagccaccag
     1081 aggaggtggt ctgaagagca cacctatgtt taaaagaagg cgagtccgtc gccgcaggat
     1141 ggagaccatt gtctttttgg acaaagaggt ttttgccagt cgaatttcca acccctctga
     1201 tgacaccagc tgtgaggatg cagaggagga tcggagggaa gtggcagaga ggaccttgcg
     1261 ggaggccaag cctgagccac cagtgaactt ccttcgtcag agggtattgc gcctcccgtt
     1321 acctgacccc ctgaagtact acctgctgta ttacagggaa aagtgagctg tgggagagta
     1381 ggaccaggat acccagagga agctgctggc caggtacatg tctcttccct ttcttggttc
     1441 ctgtctatcc tctaaaactt ttcatgtatt ggtgtgattt atttaagcac aatttaacca
     1501 gaaactgcat agaattattt tccttggggg cagggtaggg tgtgcatctt ttgagctcta
     1561 ctgtaactgg agctcttttt gggaactgca tgatgtctgc tccttatgta ggcaaacttt
     1621 cacactggga cttgaattaa attggatttg gatcctgtgt gaagcaaggg gcaagcctgt
     1681 caaggtggca tacccccact cagcttgaat tttatgtgcc ggttctgttg ctggcattga
     1741 gttcttctga gttttgcctt tttctaggtt gggaaatgtt gaaaatcccc ccttatttta
     1801 ataaaactaa tcaaatatta tgtgaaatat caaccataat gagatacaga agggagggat
     1861 aatgtataga actgccagat gtctttctgg aatttccaaa gacttctaag cagttggtcc
     1921 tccccccaat tccttctgat actttatagg aaccaccatc aagtaatctc tttttctgag
     1981 agaaaaagtt tttcctgaac catagcagtg attcatgaat cacaactgca aagaccagag
     2041 cagttctaag gtatctacat gagaattttc agagcaggta gagagactgc agtgctatag
     2101 aaagcccatg cttcttgact ttggtttgca gtctttcttt gatcatatta gagtaccagg
     2161 tcatagattt ttatctttta taattctgga gaaaaaattg ttagttttgt aaattttctt
     2221 aagaacagat acatgtattt tactagttcc attgcattag agcagtttaa cttagtgatg
     2281 tgaaatctat tatctccagg ccatgggtgt tgagaactat caagttttta aaaaaaaaaa
     2341 aaaaagcaac ctttctggct ttcagagggc aggacttgaa gttacattgc tgattccaaa
     2401 agctggctct taaaaaaaat ttttttttct agcccaaagg aaaaaaaata gtgtaaattg
     2461 ttaataataa gcccaaatta gagtattaat ttaggattca gtactgagat tttatgattt
     2521 atttttagct tagccacatg tgacttgcag agagaaattt gatagttatg tgatttctcc
     2581 agcttaaatg ggtattttgg tttatttttt ttttcaagtt agttgaatca tttttaccac
     2641 acagtatagt ctgcatgtat agctgggaaa acatataatg ccctacatta taaataaaat
     2701 gtacacttac attactttaa atataagcta tttaaagaaa gttcaaagtt gtttttactt
     2761 gccttttaac tccaatttgg gcttcttttc tttcagagag aaatgcatgc tctaacttga
     2821 cttgcaaatg tttgtagttt gcagatcttt cctgatgtta actctaattg ttagctagac
     2881 ttttatgtta cctggaaaat tttggacata aaattaaata aatgatacct gtgaagtttg
     2941 tatattagga ggattgattg aatttttttc cctgtgactg aatatgggct acattttgaa
     3001 aagccacatt tgcctttatg ctggattttt aaaaaattac aatacataag acactttctc
     3061 tttatatgtt aaacttttct tagtattttg tatttatatt ttatcacttt gtgattttaa
     3121 accataattc agttaaatat agttgtaaca agtgagaagt agattggcct ttatattata
     3181 ctaccaggga aaattgaaat tttctcataa acactttgct gccagaattc agtatatacc
     3241 gacggtatat acaaaatatc ctacattctg ttttcagact aataaatctt aatatagtca
     3301 agtgtttgtc ttcaggatct gtactgtaaa caaaatattg acaatgacta tgttttaagg
     3361 agtgggtatt tttaaacatg tgacttctgt tgtaatgtaa gaatcaaagg tgtacataaa
     3421 aatagatttg tcaacgtgga acttaaagtt gaaaatccaa gaaattagaa acactgattt
     3481 ttttttttta aatgagggga aacatgggta aacacaaatg aatcaataaa aaagtgttaa
     3541 gacattt
//
