LOCUS       NM_001257345            3984 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus protein-L-isoaspartate (D-aspartate)
            O-methyltransferase domain containing 1 (Pcmtd1), mRNA.
ACCESSION   NM_001257345 XM_002726499 XM_002729457
VERSION     NM_001257345.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3984)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On or before Nov 9, 2012 this sequence version replaced
            XM_002726499.2, XM_002729457.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1052663.1,
                                           SRR23984936.927887.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840115, SAMN16676784
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-425               JAXUCZ010000005.1  17110533-17110957   c
            426-528             JAXUCZ010000005.1  17095750-17095852   c
            529-700             JAXUCZ010000005.1  17082477-17082648   c
            701-824             JAXUCZ010000005.1  17080034-17080157   c
            825-3984            JAXUCZ010000005.1  17071629-17074788   c
FEATURES             Location/Qualifiers
     source          1..3984
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q11"
     gene            1..3984
                     /gene="Pcmtd1"
                     /gene_synonym="RGD1307986"
                     /note="protein-L-isoaspartate (D-aspartate)
                     O-methyltransferase domain containing 1"
                     /db_xref="GeneID:366300"
                     /db_xref="RGD:1586096"
     exon            1..425
                     /gene="Pcmtd1"
                     /gene_synonym="RGD1307986"
                     /inference="alignment:Splign:2.1.0"
     CDS             119..1192
                     /gene="Pcmtd1"
                     /gene_synonym="RGD1307986"
                     /codon_start=1
                     /product="protein-L-isoaspartate O-methyltransferase
                     domain-containing protein 1"
                     /protein_id="NP_001244274.1"
                     /db_xref="GeneID:366300"
                     /db_xref="RGD:1586096"
                     /translation="MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLE
                     GYRDNAYKDLAWKHGNIHLSAPCIYSEVMEALKLQPGLSFLNLGSGTGYLSTMVGLIL
                     GPFGINHGIELHSDVVEYAKEKLESFIKNSDSFDKFEFCEPAFVVGNCLQIASDSHQY
                     DRIYCGAGVQKDHENYMKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAP
                     LVQPSKNDNGTPDSVGLPPCAVRNLQDLARIYIRRTLRNFINDEMQAKGIPQRAPPKR
                     KRKRVKQRINTYVFVGNQLIPQPLDSEEDEKMEEDSKEEEEKDHSEAMKREEPPQNLL
                     REKIMKLPLPESLKAYLTYFRDK"
     exon            426..528
                     /gene="Pcmtd1"
                     /gene_synonym="RGD1307986"
                     /inference="alignment:Splign:2.1.0"
     exon            529..700
                     /gene="Pcmtd1"
                     /gene_synonym="RGD1307986"
                     /inference="alignment:Splign:2.1.0"
     exon            701..824
                     /gene="Pcmtd1"
                     /gene_synonym="RGD1307986"
                     /inference="alignment:Splign:2.1.0"
     exon            825..3984
                     /gene="Pcmtd1"
                     /gene_synonym="RGD1307986"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttccaggttt aatttatttt tggaaatcaa gttcaatatt taaaagaaaa agcacatttt
       61 ggaagccatt tctactaatt cgttacattt taccttatga tttgatttga atactgtcat
      121 gggaggagct gtgagtgctg gggaagataa tgatgactta attgataacc ttaaagaagc
      181 tcagtacatc cgaactgaaa gagtagagca agccttcaga gccattgacc gcggagatta
      241 ctatctggaa ggctacagag acaatgctta caaagactta gcctggaagc acgggaacat
      301 acacttgtca gcaccttgca tttattctga agttatggaa gctttgaaac ttcaaccagg
      361 attatctttt cttaacctgg gaagtggaac cggatattta agtacaatgg tgggcttaat
      421 tttaggtcct tttggaataa atcatgggat tgaacttcat tcagatgtgg tggagtatgc
      481 caaggaaaaa ctggagagtt tcatcaaaaa tagtgacagc tttgataaat ttgaattctg
      541 tgaacccgca tttgtggtgg gtaattgcct tcagatagct tctgacagtc atcagtatga
      601 tcgaatttac tgtggtgctg gagtccagaa agaccacgaa aactacatga agatcttact
      661 caaagttggg ggcatattgg tcatgcctat agaggatcag ttgacacaga ttatgcggac
      721 tggacaaaac acttgggaaa gtaaaaatat ccttgcggtt tccttcgcac cactagtaca
      781 gcctagtaag aatgataacg gcacaccgga ctctgtaggg ctccccccgt gtgctgtcag
      841 gaatctccaa gacttggctc gtatttacat tcgacgtaca cttagaaact tcataaatga
      901 tgagatgcaa gccaagggga ttccacaaag ggctccaccc aagaggaaaa ggaagagagt
      961 taaacagaga atcaacacct atgtatttgt gggtaatcag cttatccctc agcctctaga
     1021 cagtgaagag gatgaaaaaa tggaagaaga cagcaaggaa gaagaggaga aagatcacag
     1081 tgaagccatg aagcgtgaag agccacctca gaacctactg agggaaaaga taatgaagct
     1141 gccactcccg gagtctttaa aggcttactt gacatatttt agagacaagt aacttaaaac
     1201 aaagaagaat gcctactgat aaactccctt actcttgtaa atgtagtgtt aattaggagt
     1261 tagagaatta cttcattaga atgaattatt gcagaaaaaa agcataagtt atttctctta
     1321 atgacagaaa tgatgtattc agtgatttaa agagtctctt tcctaaaatc tatttttctt
     1381 aagtcttgaa gaattgctgt tttgatctca aagtggaatg ggtcaatagt aagaactttg
     1441 tatacagtac tctttctggt cttcatggat ttgtagtatt ggcaattgaa tttcattcta
     1501 taagaggttg atacattgtc acacacatat aggcttattt aaattgcagt ttgcatttcc
     1561 gttatgcgag cttgcttatc taataaggaa agcaaatgct tgtagaccta tttaccttac
     1621 ttttgttcta gacatattcc gggcaacata tgagtgcaat actaattcaa gatgctgaat
     1681 aatttagctt taaaaacaac cgacttcatg aaattttaca gatctgaacc tttagctatt
     1741 gccaaaaggc atggggaaaa ttcctgcttc tctcatagag attttaagag cacagctagt
     1801 gaatgttaaa gtaggaagtg gctacttgac acaactagat tgtatgggcc ctttgtgttc
     1861 tcagtattta aagataatga ggttgtctta actgtagact ttggtagtat atttaggatt
     1921 gcttttctat aaataactat aaagtactag atttgaaaag tcattcattg tcccacttgc
     1981 ctctaaatgc agacagtgag tacgtcacat taagtgacca ccacttctta gggactgcca
     2041 gtagcagggg gaatgatacg gccagttgag gcatttagca gtggaactgt tctataagtg
     2101 ggtatttatt tttgacaagg taggccacac tggcctcatc tgctctgagt cttcctaata
     2161 tagaaagtca tggaagttgt atgtagatgc ctttgtgtta aattttgctt cagaatcaga
     2221 gttggatctc tgggacacat accaagctcg tttgccttca ttctgtattt tgtttctttg
     2281 ataaaataat gattttcatt ttttgcttaa tactacattc ttaagctaca tagactctct
     2341 ccgtgataca acaggcagtg catgctgtta ctagttcttt cctcctagta aggcctgcac
     2401 agttatttct tgttaagaag ctgtgagatg tgacctactt actgcttagc atcacacaga
     2461 agggaagatt tcaagtgtct cacttattcc caccacatca ctgtcagaac agcctctcag
     2521 attcacccaa agaaatacaa tcatgatgac tcaaatggtg tataactcag gtccagtaat
     2581 tctgcatagg taatcagtta aaacagttta aacatgaaat tgattcaaat attgataatg
     2641 ttttactaat gtgagcaaca gtgttatgga aaggattcat ttgactcttg tggaatgggc
     2701 ctgtctaatt tttcttaaca taatcggtaa agtattacta agaaatgctc catcctgttt
     2761 ctgtccaaga aaggaaagcg atacctcctg ctccctgagg tggtactggg gatttaaccg
     2821 ggaccaggac ctcctgcacg ctagacaagc actctacaaa tgagatatat tcctagacca
     2881 acaaatcctt ttgttctgtc taaaaatttg tttaagaagt ttaatcttga actccagatg
     2941 cccacatagt cttatctggg aagatattca tttatttctc attttgtcac ccatatctac
     3001 tttttcttag aggttgatgt acagatatct gaaaatatgt attcctcaat gatcttattt
     3061 aggagagtgt ttttactgtc atatttaaaa atagattatt ttcatgctgc cttctgttga
     3121 ttttggcaaa ttgtataata gattgtcttg atcattgcat tttttgtctt ttaaatgtat
     3181 attttgtctt tttaaattca tttacttctc aggtgtgact ttatggttga ctttaaaggt
     3241 atgaatgaat gaaaatttaa ggaaagctgt cttatctatt aacttagatg cattagaata
     3301 agaatatttg ggtttgagct tctttttatt tgagtataga aagttatgct ttataagtaa
     3361 agaaatagca agtacagagg aaataaaaat aaatggaaga aagtaaaaag gaaaaaaacc
     3421 ctaagaaaat gaaacaaaaa aaaaaatgta agcgaaagca agccacatgt gatggccaac
     3481 gcctgtgacc agcacttgag agactgaggc aggaagaata ctacaagctt gaggcatgtg
     3541 tggtttcaga gtgactttga agcccgtctg ggccatagag taagaccagg ttttgttctg
     3601 gagaacataa acaaaagtat atgataatta cagggaatag tctcatggat ttacataaag
     3661 acaacaagag ggcttgagtg gagatgtgtg gtgctgaagt cttgcagatt ggaggcaggg
     3721 cctgacagag catccaccat taccaaaatc cttaggatct gggagcgaca ccatagctgc
     3781 caagggtctg atttaaatct gttctactca ctggtcaaca tattggactc tgctgttaat
     3841 gtaatgttaa aatagcatac ctggtgaaaa taaaatacag gaagtgtgtt gagtgtttga
     3901 gatgaaagta aaagaaaacc taaatcattg ggcaacttgg gaggaaaatc atttcaaata
     3961 aacaaatcac atcattacac agca
//
