LOCUS       NM_201418                826 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus PCNA clamp associated factor (Pclaf), mRNA.
ACCESSION   NM_201418 XM_217175
VERSION     NM_201418.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Povlsen,L.K., Beli,P., Wagner,S.A., Poulsen,S.L.,
            Sylvestersen,K.B., Poulsen,J.W., Nielsen,M.L., Bekker-Jensen,S.,
            Mailand,N. and Choudhary,C.
  TITLE     Systems-wide analysis of ubiquitylation dynamics reveals a key role
            for PAF15 ubiquitylation in DNA-damage bypass
  JOURNAL   Nat Cell Biol 14 (10), 1089-1098 (2012)
   PUBMED   23000965
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Kais,Z., Barsky,S.H., Mathsyaraja,H., Zha,A., Ransburgh,D.J.,
            He,G., Pilarski,R.T., Shapiro,C.L., Huang,K. and Parvin,J.D.
  TITLE     KIAA0101 interacts with BRCA1 and regulates centrosome number
  JOURNAL   Mol Cancer Res 9 (8), 1091-1099 (2011)
   PUBMED   21673012
REFERENCE   3  (bases 1 to 826)
  AUTHORS   Emanuele,M.J., Ciccia,A., Elia,A.E. and Elledge,S.J.
  TITLE     Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15
            protein is a cell cycle-regulated anaphase-promoting
            complex/cyclosome substrate
  JOURNAL   Proc Natl Acad Sci U S A 108 (24), 9845-9850 (2011)
   PUBMED   21628590
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Sep 23, 2022 this sequence version replaced NM_201418.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ220183.1, CN541382.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-113               JAXUCZ010000008.1  75315717-75315829
            114-191             JAXUCZ010000008.1  75316093-75316170
            192-354             JAXUCZ010000008.1  75320357-75320519
            355-826             JAXUCZ010000008.1  75327637-75328108
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..826
                     /gene="Pclaf"
                     /gene_synonym="Ns5atp9; Paf; PAF15"
                     /note="PCNA clamp associated factor"
                     /db_xref="GeneID:300795"
                     /db_xref="RGD:1303041"
     exon            1..113
                     /gene="Pclaf"
                     /gene_synonym="Ns5atp9; Paf; PAF15"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..400
                     /gene="Pclaf"
                     /gene_synonym="Ns5atp9; Paf; PAF15"
                     /note="p15PAF; HCV NS5A-transactivated protein 9 homolog;
                     PCNA-associated factor of 15 kDa; NS5A (hepatitis C virus)
                     transactivated protein 9"
                     /codon_start=1
                     /product="PCNA-associated factor"
                     /protein_id="NP_958821.1"
                     /db_xref="GeneID:300795"
                     /db_xref="RGD:1303041"
                     /translation="MVRTKANYVPGAYRKVVASQAPRKVLGSSTFVTNSSGSSRKAEN
                     KYAGGNPVCVRPTPKWQKGIGEFFRLSPKDSKKENQIPEEAGSSGLGKAKRKACPLQP
                     DHRDDENE"
     exon            114..191
                     /gene="Pclaf"
                     /gene_synonym="Ns5atp9; Paf; PAF15"
                     /inference="alignment:Splign:2.1.0"
     exon            192..354
                     /gene="Pclaf"
                     /gene_synonym="Ns5atp9; Paf; PAF15"
                     /inference="alignment:Splign:2.1.0"
     exon            355..826
                     /gene="Pclaf"
                     /gene_synonym="Ns5atp9; Paf; PAF15"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggttctcgt ccagttaaga catctgtagc tggggagtca gttaaagtgg tctcttcctg
       61 cgcgaacatg gttcggacca aagcaaacta cgtcccagga gcctacagaa aagtggtggc
      121 ttctcaagcc cctaggaagg tgcttggctc ctccaccttt gtcaccaatt cttccggttc
      181 gtcgagaaaa gctgaaaata agtatgctgg agggaaccca gtctgtgtgc gcccaactcc
      241 caagtggcaa aaaggcatcg gggaattctt caggttgtcc cctaaagatt ctaaaaaaga
      301 aaaccagatt cctgaagaag caggaagcag tggcttagga aaagcaaaga gaaaagcatg
      361 tcctttgcaa cctgatcaca gagatgatga aaatgaatag aacttattca tctgaataat
      421 gtcttcagtt tacttacata ttctaggatg taaatttggg taaatgagtt tgtccaattg
      481 gtttgttaac aggcatttaa ttgaaaaaaa aatgaggcta aaatttagcc attcaaaaga
      541 aaccagctat aaaagcggtg aatttttata atttgtaaat ttgaattgca tgtttgagtt
      601 tatgtcatat gctccttctt ttacctgtga cgcttcttcc taaaaccaac gctacatgat
      661 gctctaatta ctaatctact gtctctgctt agattttttg tactgatgcc attttatggg
      721 cattgattat ggaaatagtg ccatattttt atgtgtgcgt gcttctgtgt ttgtgccaca
      781 gtgcattttg acttagtctt ttttacatta aaaaattcaa tattaa
//
