LOCUS       NM_001129882            1580 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus polycomb group ring finger 5 (Pcgf5), mRNA.
ACCESSION   NM_001129882 XM_001080537 XM_001080543 XM_001080549
VERSION     NM_001129882.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Almeida,M., Pintacuda,G., Masui,O., Koseki,Y., Gdula,M., Cerase,A.,
            Brown,D., Mould,A., Innocent,C., Nakayama,M., Schermelleh,L.,
            Nesterova,T.B., Koseki,H. and Brockdorff,N.
  TITLE     PCGF3/5-PRC1 initiates Polycomb recruitment in X chromosome
            inactivation
  JOURNAL   Science 356 (6342), 1081-1084 (2017)
   PUBMED   28596365
REFERENCE   2  (bases 1 to 1580)
  AUTHORS   Gao,Z., Lee,P., Stafford,J.M., von Schimmelmann,M., Schaefer,A. and
            Reinberg,D.
  TITLE     An AUTS2-Polycomb complex activates gene expression in the CNS
  JOURNAL   Nature 516 (7531), 349-354 (2014)
   PUBMED   25519132
REFERENCE   3  (bases 1 to 1580)
  AUTHORS   Gil,J. and O'Loghlen,A.
  TITLE     PRC1 complex diversity: where is it taking us?
  JOURNAL   Trends Cell Biol 24 (11), 632-641 (2014)
   PUBMED   25065329
  REMARK    Review article
REFERENCE   4  (bases 1 to 1580)
  AUTHORS   Simon,J.A. and Kingston,R.E.
  TITLE     Occupying chromatin: Polycomb mechanisms for getting to genomic
            targets, stopping transcriptional traffic, and staying put
  JOURNAL   Mol Cell 49 (5), 808-824 (2013)
   PUBMED   23473600
  REMARK    Review article
REFERENCE   5  (bases 1 to 1580)
  AUTHORS   Vandamme,J., Volkel,P., Rosnoblet,C., Le Faou,P. and Angrand,P.O.
  TITLE     Interaction proteomics analysis of polycomb proteins defines
            distinct PRC1 complexes in mammalian cells
  JOURNAL   Mol Cell Proteomics 10 (4), M110.002642 (2011)
   PUBMED   21282530
REFERENCE   6  (bases 1 to 1580)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC167067.1.
            
            On or before Jul 10, 2008 this sequence version replaced
            XM_001080537.1, XM_001080543.1, XM_001080549.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC167067.1, FQ214233.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q53"
     gene            1..1580
                     /gene="Pcgf5"
                     /note="polycomb group ring finger 5"
                     /db_xref="GeneID:681178"
                     /db_xref="RGD:1583513"
     exon            1..136
                     /gene="Pcgf5"
                     /inference="alignment:Splign:2.1.0"
     exon            137..414
                     /gene="Pcgf5"
                     /inference="alignment:Splign:2.1.0"
     CDS             303..1013
                     /gene="Pcgf5"
                     /codon_start=1
                     /product="polycomb group RING finger protein 5"
                     /protein_id="NP_001123354.1"
                     /db_xref="GeneID:681178"
                     /db_xref="RGD:1583513"
                     /translation="MATQRKHLVKDFNPYITCYICKGYLIKPTTVTECLHTFCKTCIV
                     QHFEDSNDCPRCGNQVHETNPLEMLRLDNTLEEIIFKLVPGLREQELQRELEFWKKNK
                     PQENGQDEVSKVDKSKADEEGDENQDDKDYHRSDPQIAICLDCLRNHGQSGDNVVKGL
                     MKKFIRCSTRVTVGTIKKFLSLKLKLPSSYELDVLCNGEIMGKDHTMEFIYMTRWRLR
                     GENSYPMVLQYRPRIDFG"
     exon            415..511
                     /gene="Pcgf5"
                     /inference="alignment:Splign:2.1.0"
     exon            512..567
                     /gene="Pcgf5"
                     /inference="alignment:Splign:2.1.0"
     exon            568..627
                     /gene="Pcgf5"
                     /inference="alignment:Splign:2.1.0"
     exon            628..776
                     /gene="Pcgf5"
                     /inference="alignment:Splign:2.1.0"
     exon            777..875
                     /gene="Pcgf5"
                     /inference="alignment:Splign:2.1.0"
     exon            876..965
                     /gene="Pcgf5"
                     /inference="alignment:Splign:2.1.0"
     exon            966..1559
                     /gene="Pcgf5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgcggctc gcgcctcgcc acccggtcct gctccgcccc gcccgctcgg gctgctcacc
       61 taccgcccca cgcgcgcgcg ctcgtgcacc acgcgccccg tgcggcccgc ccggaacgtg
      121 gcctcccgag agctaggtat gaaaaagcag gacagcccag aggagtgatg ctcagtgacc
      181 tgcactcagg ctggatgctc atgcctcagg acacccacaa gaacatcgag ttagctcctg
      241 ggacaagctt gttatcccct tagtgcccct ctgcttgaac tgctaaagcc agctgaccac
      301 gaatggctac ccaaaggaaa cacttggtga aagatttcaa cccgtacatc acctgctaca
      361 tctgtaaagg atatctgatc aagcccacca cggtgacaga atgcctccat acattctgta
      421 agacctgtat tgtccagcac tttgaagaca gcaatgattg tccaaggtgt ggcaaccaag
      481 ttcatgaaac aaatccctta gaaatgttaa ggctagataa cacgttggag gagatcatat
      541 ttaagctggt gcctggacta cgagagcaag aacttcagcg tgagctggaa ttttggaaga
      601 aaaataaacc tcaagaaaat gggcaagatg aggtttcgaa ggttgacaaa tctaaagcag
      661 atgaagaagg tgatgaaaac caagatgata aggactatca cagaagtgac ccacaaatcg
      721 ctatctgcct ggactgttta cgaaaccatg ggcagtcagg ggacaatgtg gtaaagggtc
      781 tcatgaagaa gttcattcgc tgttctacac gagttactgt aggaactatt aaaaagtttc
      841 tgagtttaaa actaaaactt ccaagttctt atgagttgga tgtgctgtgc aatggtgaaa
      901 ttatgggaaa ggatcatact atggaattca tctatatgac aagatggcgg ctaagaggag
      961 aaaattccta cccgatggta ttgcagtatc gaccaagaat tgatttcggg taggcccagg
     1021 cccaggcctc ggctgcactg aatgaatcct gcactatttg tttactcgtc gacagattgc
     1081 acagtgaatg gtgtgtggac tcgagagaca caatctgatt tcagcatgca cataaggcca
     1141 ttgtctgtct caactgtcag tgtccttcat gttgtttcta ttaggagcca tccaagtgcc
     1201 cttccgccac tgaccatctg cacatattca tgctgtctca gtgtgcaagg cacggccgga
     1261 gcgagtgagg tccagccgcg actctgcttt ctcagtgttt tgcttgcctg ttgcaaggtt
     1321 gttctaatgt taattacact agtaaaatgg ctcaatcctt gtggtgttgc agttttcaca
     1381 tacttaatac ttttattctt attaaaatag agtactgtac aagaacctag tataattata
     1441 tcttgaaatt attttgtata agaatatatt tagaaaagtg gtttctgagc cactgtccta
     1501 ttcttggtaa acttttatgt aaaaaagaat aaacaaccaa aaaaaaaaaa aaaccaaaaa
     1561 aaaaaaaaaa aaaaaaaaaa
//
