LOCUS       XM_039107592            1480 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus polycomb group ring finger 1 (Pcgf1),
            transcript variant X6, mRNA.
ACCESSION   XM_039107592
VERSION     XM_039107592.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039107592.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1480
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1480
                     /gene="Pcgf1"
                     /gene_synonym="Nspc1"
                     /note="polycomb group ring finger 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 4 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 114
                     samples with support for all annotated introns"
                     /db_xref="GeneID:312480"
                     /db_xref="RGD:1549782"
     CDS             846..1376
                     /gene="Pcgf1"
                     /gene_synonym="Nspc1"
                     /codon_start=1
                     /product="polycomb group RING finger protein 1 isoform X1"
                     /protein_id="XP_038963520.1"
                     /db_xref="GeneID:312480"
                     /db_xref="RGD:1549782"
                     /translation="MCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFY
                     QSRGLDRVSQPSGEEPALSNLGLPFSSFDHSKAHYYRYDEQLSLCLERLSSGKDKNKN
                     VLQNKYVRCSVRAEVRHLRRVLCHRLMLNPQHVQLLFDNEVLPDHMTMKQLWLSRWFG
                     KPSPLLLQYSVKEKRR"
ORIGIN      
        1 ttgtactcga tgctaataac gctgtagaat aaatttattc tttttaagtt cccctgtaag
       61 gacccaggat gacagtgtgc catatctggg gcccggggcc tatgctactg catgcactcg
      121 ctgcccaagt atcctcgctg tcaatcctcc cctcctcctt cagcatctgc tctgcattag
      181 tctgtcccag gcctccgcag gcgccgatga ttaaatcatc atcattaacc agggcctatc
      241 ctgggcagca gggagagagt ggggagtaag atcgctacgt ttcccggggg aggggggtat
      301 ctctccctcc ccaccccgcc cagggcaccc tctcctagac ttcgcgagcc gggaaaaact
      361 cccgcggcga ctggaggagg cccgcggctc ggacgcagct ccgcaacgca gacgccttag
      421 cggagcaggg ctacactgca cagtgaggac cccgggtctg aggcgaggtc gggtccaggg
      481 actcccgcgc tctgaagctg gagcggccgg cgatagcccg accttggggt cccggggcac
      541 aggctatcac aagctcccga agctgatcca gaggttgtgt gcgcgccgtc cgaagaacgc
      601 ctgtggaagc gtgcacagca gagaccctgc ttcacgcttc ccccactccc taacgaccac
      661 cgagtgttgg ggggggtcag cgggctcagg aggaggtccg ggtgaagatc aaagacctga
      721 atgaacacat cgtttgctgc ctatgcgcgg gctacttcgt ggacgccacc actatcacag
      781 agtgcctcca caccttctgc aaaagttgta tcgtgaagta cctgcagacc agcaagtact
      841 gccccatgtg taacatcaag atccacgaga cgcagccgtt gctcaatctc aaactggatc
      901 gggtcatgca ggacatagtg tataagctag taccaggctt gcaagacagt gaagagaaac
      961 ggattcggga attctatcag tcccgaggct tggacagagt ctcccagccc agtggtgaag
     1021 agccagccct gagcaacctt ggcctcccct tcagcagttt tgaccactct aaagcccact
     1081 attatcgata cgatgagcag ctgagcctat gcctggagcg gctgagttct ggcaaagaca
     1141 agaataaaaa tgtccttcag aacaagtatg ttcgatgttc tgttagagct gaggtccgcc
     1201 atctccgaag ggttctgtgt caccgactaa tgctaaatcc acaacatgta cagctccttt
     1261 ttgacaatga ggttctccct gatcacatga caatgaagca gctatggctt tcccgctggt
     1321 tcggcaagcc atctcctttg cttctacaat acagtgtgaa agagaagagg aggtaggggc
     1381 caggcttgct tccaccccct tcccacccct cccagatatt tatgtgaaat taactgcggt
     1441 tttatttttt gaaataaatg cttttaaaaa gcacttctca
//
