LOCUS       NM_001399285            4202 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus PC-esterase domain containing 1A (Pced1a),
            transcript variant 2, mRNA.
ACCESSION   NM_001399285 XM_039104576
VERSION     NM_001399285.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4202)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 5, 2022 this sequence version replaced XM_039104576.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.18885.1,
                                           SRR26360194.131916.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-426               JAXUCZ010000003.1  138075175-138075600 c
            427-567             JAXUCZ010000003.1  138074734-138074874 c
            568-647             JAXUCZ010000003.1  138074008-138074087 c
            648-886             JAXUCZ010000003.1  138073660-138073898 c
            887-1037            JAXUCZ010000003.1  138073419-138073569 c
            1038-1284           JAXUCZ010000003.1  138073084-138073330 c
            1285-1545           JAXUCZ010000003.1  138070844-138071104 c
            1546-4202           JAXUCZ010000003.1  138067893-138070549 c
FEATURES             Location/Qualifiers
     source          1..4202
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..4202
                     /gene="Pced1a"
                     /gene_synonym="Fam113a; RGD1308836"
                     /note="PC-esterase domain containing 1A"
                     /db_xref="GeneID:296158"
                     /db_xref="RGD:1308836"
     exon            1..426
                     /gene="Pced1a"
                     /gene_synonym="Fam113a; RGD1308836"
                     /inference="alignment:Splign:2.1.0"
     exon            427..567
                     /gene="Pced1a"
                     /gene_synonym="Fam113a; RGD1308836"
                     /inference="alignment:Splign:2.1.0"
     CDS             444..1793
                     /gene="Pced1a"
                     /gene_synonym="Fam113a; RGD1308836"
                     /note="isoform a is encoded by transcript variant 2;
                     family with sequence similarity 113, member A; protein
                     FAM113A; PC-esterase domain-containing protein 1A"
                     /codon_start=1
                     /product="PC-esterase domain-containing protein 1A isoform
                     a"
                     /protein_id="NP_001386214.1"
                     /db_xref="GeneID:296158"
                     /db_xref="RGD:1308836"
                     /translation="MVFCLENKMPHRLLGSAMVHFHASEVQQLLHNKFVVILGDSIQR
                     AVYKDLVLLLQKDTLLTASQLKAKGELSFEQDQLVAGGQLGELHNGTQYREVRQFCSG
                     SGHHLVRFYFLTRVYSEYLEDVLEELSYGPAPDLVIINSCLWDLSRYGRCSMESYREN
                     LERVFVRMDQVLPDSCLLVWNLAMPLGERVTGGFLLPELQPLAVSLRQDVVEGNFYSA
                     TLAGNHCFDVLDLHFHFRHAVRHRHRDGVHWDQHAHRHLSHLLLTHVADAWGVELPKH
                     DRLPDPWIEDWPEMDHSYQGSHKQPPDFREKPALPLLPPFHLPPPMSFPYPLQPSPPP
                     LFPPLPQDTPFFQGQPFPPYEFKYNAMEDFSMPGCGPGMNFVPGPLPPSVSGPVSHGQ
                     HRGPVVHRGKPRCVLNNPYHVPRIGGPCRHRLRHSDRLIHTYKQDRRGYAHSGTWPG"
     exon            568..647
                     /gene="Pced1a"
                     /gene_synonym="Fam113a; RGD1308836"
                     /inference="alignment:Splign:2.1.0"
     exon            648..886
                     /gene="Pced1a"
                     /gene_synonym="Fam113a; RGD1308836"
                     /inference="alignment:Splign:2.1.0"
     exon            887..1037
                     /gene="Pced1a"
                     /gene_synonym="Fam113a; RGD1308836"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1284
                     /gene="Pced1a"
                     /gene_synonym="Fam113a; RGD1308836"
                     /inference="alignment:Splign:2.1.0"
     exon            1285..1545
                     /gene="Pced1a"
                     /gene_synonym="Fam113a; RGD1308836"
                     /inference="alignment:Splign:2.1.0"
     exon            1546..4202
                     /gene="Pced1a"
                     /gene_synonym="Fam113a; RGD1308836"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctatgctgaa cgttcgtcct gccctcggcc agtaccaggg cttcgcgccc gcccgagtgg
       61 gcctagcctt aatttctgtt cttcccagcg gccaacctca ctgcccttct gattcctccg
      121 gcgttggggg tcgcataggg cgggacatgg gtgaccggaa gtgggagcca tgagcatctc
      181 ctgaagctca gacgctggaa gcattggctg gactaccgca acgcacgaat ggggagcgct
      241 gggcctcgag ctgcgtaccg acagctaacc tgggcacccg agctctgtgg ggcgggattt
      301 ttgcagaacc caccgctctc caggggcatg ggaacatgac tctagataag gaacccgctg
      361 cggacaaggc gcaccgcgcc cgggcctgcc gtactggccg gtgaatcccc ggagccctga
      421 gacctgctgg tgtcagtggc agcatggtct tctgtttgga aaacaagatg ccgcaccgcc
      481 tgctgggaag cgccatggtc cacttccatg cctcggaagt ccagcagctg ctacacaaca
      541 agttcgtggt cattttgggg gactccatcc aaagagctgt gtataaggac ctggtgcttc
      601 tgctccagaa agacacactg ctcacggctt cccagttaaa agccaagggg gagctgagct
      661 ttgaacagga tcagctggtg gctgggggcc agctgggaga gctgcacaac gggacacagt
      721 accgagaggt ccgccagttc tgctctggtt ctggccacca ccttgtgcgc ttctacttcc
      781 tcacccgtgt ttactccgag taccttgagg acgtcttgga ggagctgtca tatggacctg
      841 cccctgacct agtgatcatc aactcctgcc tctgggatct ctccagatat ggccgctgct
      901 caatggagag ctacagggag aacttggaac gagtgtttgt acgaatggac caggttttgc
      961 cagactcttg tctgctggtg tggaacttag caatgccttt gggggagcgt gtcactgggg
     1021 gtttcctcct gccagagctc cagccccttg cagtctctct gcgacaggat gtggttgagg
     1081 ggaacttcta cagtgctaca ttagccggga accactgttt tgacgtctta gatctccact
     1141 tccatttccg gcatgctgta cgtcaccgtc atcgagatgg tgtccattgg gaccagcatg
     1201 cacaccgcca cctctcacac ttacttctga cccatgtggc tgatgcctgg ggtgtggagc
     1261 taccgaaaca tgaccgtctc ccagacccgt ggattgagga ctggccagag atggatcatt
     1321 cataccaggg aagccataag cagcccccag acttcaggga gaagccggcc ttgcccctgc
     1381 tcccaccttt ccatttgcct ccccccatgt cttttcctta cccacttcag ccctcaccac
     1441 ctcccttgtt cccacccctg ccccaggata cccccttttt ccaaggccag ccctttccac
     1501 cctatgaatt caaatacaat gcaatggagg acttctcaat gccaggatgt ggccctggaa
     1561 tgaactttgt acctggcccc ctgccaccat ccgtctctgg ccctgtctcc catggtcaac
     1621 accggggccc agtggtccac cggggcaagc cacgttgtgt tctgaacaac ccctaccatg
     1681 taccaaggat tgggggcccg tgcaggcatc gactcagaca ctcagacaga ctgatccaca
     1741 catataaaca ggacagacgg ggatatgccc attcaggaac atggcctggg taggcagggt
     1801 cttaggttgg ggttagggat gccaatgacc ctggagggtc tgcttgataa cctagctgtt
     1861 ggggcggggg tgttcttgtc cattgctgct atcaataaat gcatgaaagg acagagcggc
     1921 attcctgtgt gagggaatgg gtctcccaaa ccatgacttt aaggcatggg gaagatgccc
     1981 ttgacctcta taaacaattt agaaatctgt aaatacactc ttctacacag ggccatcttc
     2041 acaagaacac agacacacta aataaagatt cctagagggt cccttgttat caacaggtct
     2101 ttgggactgg gaaaaatcaa ggactgagtt aaagggtcat tattctagat gagttttgaa
     2161 tttggctaat tcttaccttc cctcctactt acaatcatgt gtttttggtg ttcatctctt
     2221 cctgaaagta gaaaaatgca accttagcgt gcattcttgg cacacagcag gcattcagtt
     2281 agttgttaga acctaggtga gaagcttcca agtgcaggtg aagactagtc aggatcccat
     2341 cagtcccctg atatgagtaa gagcaactcg tgcactggtg ggccaggccg ggcagtggca
     2401 caggatccct cagtcccttg ctatgatgtg cagtaagagc aactcgtgca ctgggggact
     2461 gggcagtggc agagatgctt gctaaattgg tcacagagaa tatcagagcc tcagctttga
     2521 atggggagga caccctggag tatgccagtg acaatggtca gagagagggc acgcaaggac
     2581 tcatttgaat tagagtggag ggaacagaat tcttgggttc atttttgtcc ctgttaatga
     2641 aacctttcaa aggacaacat tccactgaaa agaaaacaga aaagttgatc agaaaaatgg
     2701 attttggtta acaatctggc agattgataa agggcatggt tcacacaggc aggtgctaag
     2761 gaagtggtca cagacaatgt gagttaaaac ctttggagga gaccagacac gcagaggctc
     2821 caacacagcg tccaagacaa atgtatcaat ccttgcttct tctttttttc cacatggaga
     2881 ggtttaatga gagaagagta gaagaaaggg gaagtaaagg ccggccatgg gaaggggggc
     2941 gatggggaga gaagggacag ggaaagaggg gaagagagca gagcagagaa gaacaaagag
     3001 ctcaatcctt tcttctgaac aagattaaag gggtacaaaa attaaaagat ttttaggtct
     3061 gtttttacag agataagaat tttgataatt tttcttgcag aaatggattt tttttctttt
     3121 catcatcaaa acctcattgt tagagcagtc ttctccagcc acagtctgtc cagtcccttg
     3181 tcactttctg catttcctgc cagagacttt tgtatctttg cttctccagt gttggagaaa
     3241 actgcacata tattgatttc catgaaaccc ctgagttctg tcctgcaggg ctggccgcta
     3301 gcctgtcccg cagtggtcca tatcacctcc ctcctgagcc cttctctgcc ccttctactt
     3361 cttcaattct gggcttaatg tctagaactc acgctccata aacaacctcg agatgggtgt
     3421 acgtcatact atttacatgc ttcctctgtg ttcttaattt ctaccctact ttgacttcca
     3481 tgccccaacc ctttaaaaaa tatttcctta tggccactta aagttttttt gaaataagat
     3541 agatgctctt acacttgaaa tctatcctaa aaagaataga gagattttat cttggctgtc
     3601 atacaattga aaagttaaaa aaaagcctta tacatgtctt catctacact caaattattc
     3661 cctagacttt gtcttgaggt gtaaaaatga ttaaagctta gattgcccca atataaaggc
     3721 ccactattgg ctaatcagga aagaactaat tttcattgtc tccaaaatgt gacccacact
     3781 gccttgctca cagaaccatg attttcaaag gataggtcca gtatcagttt ttccacagga
     3841 ctaaaagcag tgcaggcctg tgtgtcaacc tttcctgccc ttgggggagg ggctgcttaa
     3901 actctgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg gtggtggtgg
     3961 tggtggtggt ggtggtggtg gtggtggtgt ggtatagcac ctgcggagat cagaggacaa
     4021 ctttggggtc ttcaccttta tgtgggaccc aagggttgaa ttcaggttgt cagactgatg
     4081 cagcctcctt tacccactga tctacctcca tgacacaaaa ttcttttaaa taaaactatt
     4141 agttttcccc tagtttgatg taaactaaaa gttttccaat aaaagtggac cactgtcttg
     4201 tc
//
