LOCUS       NM_001014773            4761 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus protocadherin gamma subfamily A, 7 (Pcdhga7),
            mRNA.
ACCESSION   NM_001014773 XM_226025
VERSION     NM_001014773.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4761)
  AUTHORS   Zou C, Huang W, Ying G and Wu Q.
  TITLE     Sequence analysis and expression mapping of the rat clustered
            protocadherin gene repertoires
  JOURNAL   Neuroscience 144 (2), 579-603 (2007)
   PUBMED   17110050
REFERENCE   2  (bases 1 to 4761)
  AUTHORS   Wu Q.
  TITLE     Comparative genomics and diversifying selection of the clustered
            vertebrate protocadherin genes
  JOURNAL   Genetics 169 (4), 2179-2188 (2005)
   PUBMED   15744052
REFERENCE   3  (bases 1 to 4761)
  AUTHORS   Murata Y, Hamada S, Morishita H, Mutoh T and Yagi T.
  TITLE     Interaction with protocadherin-gamma regulates the cell surface
            expression of protocadherin-alpha
  JOURNAL   J Biol Chem 279 (47), 49508-49516 (2004)
   PUBMED   15347688
REFERENCE   4  (bases 1 to 4761)
  AUTHORS   Zhang T, Haws P and Wu Q.
  TITLE     Multiple variable first exons: a mechanism for cell- and
            tissue-specific gene regulation
  JOURNAL   Genome Res 14 (1), 79-89 (2004)
   PUBMED   14672974
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY574018.1.
            
            On Jul 26, 2005 this sequence version replaced XM_226025.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY574018.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132300, SAMD00155331
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4761
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..4761
                     /gene="Pcdhga7"
                     /gene_synonym="PCDHGB4"
                     /note="protocadherin gamma subfamily A, 7"
                     /db_xref="GeneID:291635"
                     /db_xref="RGD:1305108"
     exon            1..2634
                     /gene="Pcdhga7"
                     /gene_synonym="PCDHGB4"
                     /inference="alignment:Splign:2.1.0"
     CDS             205..3009
                     /gene="Pcdhga7"
                     /gene_synonym="PCDHGB4"
                     /codon_start=1
                     /product="protocadherin gamma-A7"
                     /protein_id="NP_001014773.1"
                     /db_xref="GeneID:291635"
                     /db_xref="RGD:1305108"
                     /translation="MAPGQRGWGSDYRGFVLLSILLGTRWEAWAGQILYSVSEETDKG
                     SFVGNITKDLGLQPRELAERGARIITKGKTQLFSLNPRSGSLVTAGRIDREELCTQSP
                     RCLVSFNILIEDKMNLYPIEVEIMDVNDNAPRFLTEEINVKIMENAAPGMRFPLSEAT
                     DSDVGKNSLQRYQLSPNHHFSLVVQNGDDGTKYPELVLEKALDREEEGLHHLVLTAYD
                     GGDPLRSGTASIHVTVVDVNDHTPVFSLPRYQATVPENVPVGTRLLTVNAIDLDEGIY
                     GEVTYSFWKITPELLQMFHLSSLTGELSTLKGLDYEESSFYELEVQAQDGAGSLTKAK
                     VLITVLDVNDNAPEVTVTSVSSPIPEDTPPGTVTALFYLQDKDSGKNGEVTCSLPENL
                     PFKLERSIDNYYRLVTAQNLDREKMSMYNITLKATDGGIPPLSTETHMSIHVSDTNDN
                     PPTFSDSSYSIYVPENNPRGASIFSVTAQDPDSDKNAQITYALAEDSIQGVPVSSYIS
                     INSDTGVLYALGSFDYEQFRDLQLQVTARDSGDPPLSSNVSLNLFVLDRNDNAPEILY
                     PALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGPNAWLSYRLLKASEPGLFSVGLH
                     TGEVRTARALLDRDALKQNLVVAVQDHGQPPLSATVTLTVAVANSIPDVLADLGSIRT
                     PSEPDDSDITLYLVVAVATVSCVFLVFVTVLLALRLWRWHKSHMLQASSGGLEDVPAS
                     HFVGLDGVQAFLQTYSHEVSLTADSRKSHIIFPQPNYVDTLISQDSCEKSDSLLTSID
                     FQECKGETPSTQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILA
                     SASEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
                     GKAPAGGNGNKKKSGKKEKK"
     exon            2635..2693
                     /gene="Pcdhga7"
                     /gene_synonym="PCDHGB4"
                     /inference="alignment:Splign:2.1.0"
     exon            2694..2782
                     /gene="Pcdhga7"
                     /gene_synonym="PCDHGB4"
                     /inference="alignment:Splign:2.1.0"
     exon            2783..4761
                     /gene="Pcdhga7"
                     /gene_synonym="PCDHGB4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagttcagac agaaccaccg agtttacaac acaaagaaag gacagactga gacaagcaag
       61 ccttcctcca agccgcatca aactcaagcc gaatggctgg attcccggct tcccttccgc
      121 acaccaggat attggagaat acaactgggt tctgaagcac attccgagac ctctcagggt
      181 gtgagcaaaa tctgcaggac agcaatggcg cccgggcaga ggggctgggg ctcggactac
      241 agaggatttg tgctgctctc cattctcctg gggacccggt gggaagcctg ggcaggacag
      301 attctctact ccgtgtctga agagacagac aagggatctt ttgtgggaaa tatcaccaag
      361 gatctgggat tgcagcctcg ggagctggcg gagcgcggag cccgcatcat caccaaaggt
      421 aagacccagc ttttctcact gaacccgcgg agcggcagct tggtcaccgc gggcaggata
      481 gaccgtgagg aattgtgcac tcagagcccg cgatgtctcg tgagctttaa catcttgata
      541 gaagacaaaa tgaatcttta ccccatagag gtggaaataa tggatgttaa tgacaacgca
      601 cccagattct taacagaaga aataaatgta aaaataatgg aaaacgcagc tcctgggatg
      661 cggtttccac ttagcgaggc tacagattca gatgtgggca agaactccct ccagagatac
      721 cagctcagcc ccaatcacca tttctctctg gttgtgcaga atggagatga tgggaccaag
      781 tacccagaac tagtgctgga gaaggctctt gatagggaag aagaggggct tcaccatctg
      841 gtcctcacag cctatgatgg cggggatcca ctccgatctg gcaccgccag catccacgtg
      901 acagtggtgg atgtgaatga ccacacgcca gtcttctctc tgccccggta tcaagcgaca
      961 gtccctgaga acgtgccagt aggcacaaga cttctcacag taaatgctat cgacttggat
     1021 gaggggatct atggggaagt gacttactct ttctggaaaa taactccaga acttctgcaa
     1081 atgttccatc tgagctccct gacaggagaa ctgtcgacgt taaaaggtct ggattatgaa
     1141 gaatccagct tctatgaact ggaagttcag gctcaagatg gggctggaag tctgaccaag
     1201 gcaaaagtac tgatcacagt tttggatgtg aatgacaatg ccccagaagt aactgtcaca
     1261 tctgtgagca gccccatccc tgaagacaca ccacctggga cagtgaccgc tctcttctac
     1321 ctccaagaca aagattcggg gaagaatggc gaggtgacct gctctttgcc agaaaacctg
     1381 ccttttaagt tagagcgatc aattgataat tattacaggc tggtcacggc acaaaacctg
     1441 gaccgggaaa agatgtctat gtacaacatc acactgaagg ccacagatgg tggaatccct
     1501 cccctgtcca ctgaaactca catgtccatt catgtgtcag acaccaacga caacccaccc
     1561 accttttctg attcctcgta ctccatctat gtccctgaga acaatcccag aggcgcctcc
     1621 atcttctcgg tgactgcaca agaccctgac agtgacaaga atgcccaaat cacttatgct
     1681 ctagcagaag acagcatcca gggagtgccg gtgtcctcct acatctccat caactctgac
     1741 actggtgtcc tctatgcact tggatccttc gactatgagc agtttcggga tctacaactg
     1801 caagtgactg ctcgtgacag tggggaccca cctctcagca gtaatgtgtc attgaacctc
     1861 tttgtgctgg acaggaatga taacgcccct gagatcctgt accctgccct ccccactgat
     1921 ggttccacag gggtggagct ggctccccgc tctgcagaac ctggatacct agtgaccaaa
     1981 gtggtggctg tggacaaaga ctcaggccca aatgcttggc tgtcctaccg cctgcttaaa
     2041 gccagtgagc cagggctttt ctcagtaggg ctacacactg gtgaggtgcg cacagcaagg
     2101 gctcttctgg acagagacgc acttaaacag aaccttgtag tagccgtaca ggaccatggc
     2161 caacccccac tctcagccac agtgacactt actgtggctg tggccaacag catccctgat
     2221 gtcctggcag acctaggcag cattaggacc cccagtgaac ctgatgattc agatatcacc
     2281 ctctacctgg tggtggcagt ggccactgtt tcttgtgttt tccttgtctt tgtcactgtg
     2341 ttattggctc tcagactatg gcgttggcac aaatcacaca tgctacaagc ttcaagtggt
     2401 gggctggaag atgtgcctgc ctcacacttt gtaggcttgg atggcgtcca ggctttccta
     2461 cagacatatt cccacgaggt ttcactcact gcagactctc gaaagagcca cattatcttc
     2521 cctcagccca actacgtgga tacacttatc agtcaagaca gctgtgagaa aagcgattct
     2581 ttgttaacat ccatagattt tcaagaatgt aagggtgaaa ccccgagtac ccagcaagcc
     2641 ccgcccaaca ctgactggcg tttctctcaa gcccagagac ccggcacgag cggatcccaa
     2701 aatggggatg aaaccggcac ctggcccaac aaccagttcg atacagagat gctgcaagcc
     2761 atgatcttgg cctctgccag tgaagccgct gatgggagct ccactctggg agggggcact
     2821 ggcactatgg gtttgagcgc tcgatatgga ccccagttta ccctgcagca cgtgcctgac
     2881 taccgccaga acgtgtacat ccctggcagc aatgccacac tgaccaacgc agctggcaaa
     2941 cgagatggca aggctccggc aggcggcaat ggcaacaaga agaagtcggg caagaaagag
     3001 aagaagtaat atggaggcca ggccttgagc cacagggcag cctccctccc cagccagtcc
     3061 agcttgtcct tacttgtacc caggcctcag aatttcaggg ctcaccccag gattctggta
     3121 ggagccacag ccaggccatg ctccccgttg ggaaacagaa acaagtgccc aagccaacac
     3181 cccctctttg taccctaggg gggttgaata tgcaaagaga gttctgctgg gaccccctat
     3241 ccaatcagtg attgtaccca cataggtagc agggttagtg tggatacaca cacacacaca
     3301 cacacacaca cacacacaca cacaaacacc atgccacact cccctagtta cagctgaact
     3361 ccccatcttc caacccagtc aggctcattc atctccagcc tccctctccc caccccaccc
     3421 tttcagtcaa caccctctct ttgagccagg tagttgggct gttggggtga caggtgagct
     3481 aagggggctc ctagttctga acaggtggga gagtattaca atcctttggc ctctccttca
     3541 gttcagctgt cccccaaagc atggtttggt accagtcttc tcatttcctc ctagagcctg
     3601 agaccaatgc ttaagttttg gggaacagtc accatgcccc tggtactgat gatgcttgct
     3661 ggatttttgg gaaggcattt tgctactaag cctcttttca atgcctgggg actaccagtc
     3721 ttctgttctc cattgtttga tgttcccact gcatgctgtg acttcctact cctcaaagaa
     3781 gagactcctt tgcatgtctg gagacagtag ggggtggtaa actaaaggga agctgagtgt
     3841 atactgctgg gagtgggggc agtggacaaa acagcctgtt aatagggtct tgcaaggggc
     3901 tctgtacgta cccagggtac tggctcaatc ctcaaattct agccatagac aaacatcagg
     3961 ccagacccct ccctcctggt tcagcctggg cagcttgggc tgagccacca ggaccaatgg
     4021 atttaagctg acatttcagt ccaagaagac ttctaagtga gtttaagacc agagaggaaa
     4081 gaggggcctc tgtgggtgct gggtactcca gaggtgccct tggtgggagg gtcagtggtc
     4141 ctagcaggaa gggagcccag caaggtcatt cttggaccct gggtctagtc cggtagctag
     4201 aacaagggac caagtggcta taaagtctca gccaatgatg aggcttttcc cctgggcctc
     4261 tgggcccctg tattcctcaa gcccctggcc tccaccttac caggtgccat ttctcagaag
     4321 gccactgccc aggcccccag gccgccccct cgtggccaca gaccggttaa agccccccag
     4381 tgcctccttg tgcatagaac ttcctctgcc cgagccctta cagtagtgta gaagccccct
     4441 tcctcctccc gctggtgtag aatagccaat agtatagtgt ggtgtgcttt tacgtgatgg
     4501 cgagtgggca gcgggcggtg ggctgtgcgc agccgtctgt cctttgaatc tcaatctgcc
     4561 tgcgcggcca gtgctgtgtt ttgtgctgtg tccacacgct gcggcgaccc ctccctgtac
     4621 tgacttctct ataaaagctt ctcttcgcat agtcacgtag ctcctgccca tcccccttcc
     4681 gatatctctc gcaagtttta tactctaata tttatatggc ttttttcttc gaaaattaaa
     4741 aataaaaaat ggtttcttct g
//
