LOCUS       NM_001037137            4719 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus protocadherin gamma subfamily A, 5 (Pcdhga5),
            mRNA.
ACCESSION   NM_001037137 XM_226027
VERSION     NM_001037137.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4719)
  AUTHORS   Zou C, Huang W, Ying G and Wu Q.
  TITLE     Sequence analysis and expression mapping of the rat clustered
            protocadherin gene repertoires
  JOURNAL   Neuroscience 144 (2), 579-603 (2007)
   PUBMED   17110050
REFERENCE   2  (bases 1 to 4719)
  AUTHORS   Wu Q.
  TITLE     Comparative genomics and diversifying selection of the clustered
            vertebrate protocadherin genes
  JOURNAL   Genetics 169 (4), 2179-2188 (2005)
   PUBMED   15744052
REFERENCE   3  (bases 1 to 4719)
  AUTHORS   Murata Y, Hamada S, Morishita H, Mutoh T and Yagi T.
  TITLE     Interaction with protocadherin-gamma regulates the cell surface
            expression of protocadherin-alpha
  JOURNAL   J Biol Chem 279 (47), 49508-49516 (2004)
   PUBMED   15347688
REFERENCE   4  (bases 1 to 4719)
  AUTHORS   Zhang T, Haws P and Wu Q.
  TITLE     Multiple variable first exons: a mechanism for cell- and
            tissue-specific gene regulation
  JOURNAL   Genome Res 14 (1), 79-89 (2004)
   PUBMED   14672974
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY574016.1.
            
            On Nov 6, 2005 this sequence version replaced XM_226027.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY574016.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132272, SAMD00132281
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4719
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..4719
                     /gene="Pcdhga5"
                     /note="protocadherin gamma subfamily A, 5"
                     /db_xref="GeneID:291637"
                     /db_xref="RGD:1311949"
     exon            1..2592
                     /gene="Pcdhga5"
                     /inference="alignment:Splign:2.1.0"
     CDS             169..2967
                     /gene="Pcdhga5"
                     /note="protocadherin gamma-A5"
                     /codon_start=1
                     /product="protocadherin gamma-A5 precursor"
                     /protein_id="NP_001032214.1"
                     /db_xref="GeneID:291637"
                     /db_xref="RGD:1311949"
                     /translation="MADPPRRLICNDLLTFFMLLGTLCAPGNGQIRYSVREELDKGSF
                     VGNISKDLGLEPRELAERGVRIISRGRSQLFSLNPRGGSLVTAGRIDREELCAQSAPC
                     LISFNILVENKMKIYEVEVEVLDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDG
                     DVGVNSLQGYQLSANPHFSLDVKSGSDGQKHPELVLEQPLDREKESALDLVLTALDGG
                     NPVHSSTVHISVTVLDANDNAPLFTQSEYRVNVPENTPVGTRLLILTATDADEGINAK
                     LTFSFRNEEDKISETFQLDSNLGEISTIQSLDYEESSFYLMEVVAQDGGALLASAKVL
                     VTVQDVNDNAPEVILTSLTSSVSEDCLPGTIIALFSVHDADSGENGEVSCSIPKNLPF
                     KLEKSVNNYYHLLTTSALDREETSDYNITVTVVDRGTPPLSTENHISLKVADINDNPP
                     TFSRPSYSTSISENNPRGVSIFSVNAYDADSGDNARITYSLAEYTFQEVPVSSYVSIN
                     SDTGVLYALQSFDYEHLRDLQLLVTAKDSGNPPLSSNASLSLFVLDQNDNTPEILYPA
                     IPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFSIGLHTG
                     EVCTARALLDRDVPKQSLVVAVQDHGQPPLSATVTLTIAVGDSIPDVLTDLGNHNTPA
                     EPQDSDLTLYLVVSVAVVSCVFLGFVTVLLALRLRHWHMSRLLQTSTGRLASMPASHF
                     VGMDGVQAYLQTYSHEISLTTDSKKSHLIFPQPNYADRLISEESCEKSEPLLIPDNIH
                     TSKEEPGAAQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASA
                     SEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK
                     APAGGNGNKKKSGKKEKK"
     exon            2593..2651
                     /gene="Pcdhga5"
                     /inference="alignment:Splign:2.1.0"
     exon            2652..2740
                     /gene="Pcdhga5"
                     /inference="alignment:Splign:2.1.0"
     exon            2741..4719
                     /gene="Pcdhga5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaagcagtca taggagcgac cagctagctc ccagcttcct ccgcaccaga gaccagacaa
       61 gctcttgggg aaagtcacca tcctaagtcc cgctctcccc agctttagaa aaataaggaa
      121 agagcaggct gaaccaggac taagaagaaa gcgaagaaag aaaagacaat ggcggaccca
      181 ccgaggcgct tgatctgcaa cgacctgctg acgttcttca tgctgctagg gacgctgtgc
      241 gcgccaggaa atgggcagat ccgctactct gtgcgggagg agctagacaa aggctccttc
      301 gtgggcaaca tctccaagga cctggggctg gagccccgcg agctggcgga gcgcggggtc
      361 cgcatcatct ccagaggtag gtcgcagctt ttctctctga acccgcgagg cggcagcctg
      421 gtcaccgcag gaaggataga ccgggaggag ctgtgcgctc agagcgcgcc ctgtctcatc
      481 agctttaaca tcttggttga gaataaaatg aaaatttatg aagtagaagt agaagtcctt
      541 gatattaatg ataacttccc ccggttccgc gatgaggagt taaaagtaaa ggtaaatgaa
      601 aacgcagctg ctggaacacg tttggtgctc cccttcgcga gagatgggga tgtgggtgtg
      661 aattccctcc agggttacca gctcagcgcc aacccgcact tctcactgga cgtaaagagt
      721 ggatctgacg ggcaaaaaca cccagagttg gtgttggaac agcccctgga ccgtgagaag
      781 gagtctgctc tcgacctggt cctcacagct ttggacggcg gaaacccagt acattctagc
      841 actgtccata tcagcgtgac cgtcctcgac gcaaatgaca acgcacccct gttcacgcaa
      901 agcgaataca gagtgaatgt tccggaaaac acacctgtgg gcactagact cctcatactc
      961 accgccacag atgcagacga gggaatcaat gcgaagttga ccttctcttt ccgcaacgaa
     1021 gaagataaaa tttctgaaac tttccaactc gattctaatc tgggtgagat ctcaactatt
     1081 caatccttgg actatgaaga atccagtttc tatctcatgg aagtggtagc ccaggacggc
     1141 ggcgctcttc ttgccagcgc taaggtgttg gtcacagtcc aggacgtgaa tgacaatgct
     1201 ccagaagtga tactcacctc cctcaccagt tccgtttccg aagactgtct acccggaacc
     1261 ataattgcac ttttcagcgt acatgatgct gattccgggg agaatggaga ggtttcatgt
     1321 tctattccca agaaccttcc cttcaaactg gaaaagtcag taaataatta ctaccaccta
     1381 ctaacaacaa gcgcactgga tagagaggag acttcggatt ataatatcac agtgaccgtc
     1441 gttgatcgcg ggactcctcc cctgtctaca gaaaaccaca tctctctgaa agtagccgac
     1501 ataaatgaca acccacccac cttctctcgt ccctcctatt ccacttccat ctcagaaaat
     1561 aaccccagag gtgtctccat tttttcggta aatgcctatg atgctgacag cggtgataat
     1621 gcccggatca cttactccct ggctgaatat acatttcaag aagtgcccgt gtcctcctac
     1681 gtctccatta actctgacac tggagtcctg tatgcactac agtcctttga ctatgagcac
     1741 ttgagagacc tgcagctcct ggtgacagct aaggacagtg ggaaccctcc actcagtagc
     1801 aatgcctccc tgagcttgtt tgtgctggac cagaatgaca acacgcctga gatcctgtac
     1861 ccagctattc ctactgatgg ctccacgggt gtggaactgg caccccgctc tgcagagcct
     1921 ggatacctgg taaccaaagt tgtggcagtg gacaaagatt cgggacagaa cgcctggtta
     1981 tcctaccgcc tgctcaaggc cagtgaacca gggctcttct caatagggct tcacacgggt
     2041 gaggtgtgca cagcaagggc tctattggat agagacgtac ccaagcagag cctggtagtg
     2101 gctgtccagg accatggcca gccccctctc tcagccactg tcacactcac tatcgctgta
     2161 ggggacagca tcccggatgt actgactgac ttaggcaacc acaacacacc agcagagccc
     2221 caggattcag acctcacact ctacctagtg gtatcggtgg cagtggtctc ctgtgtcttt
     2281 ctgggatttg ttaccgtgct gttggccctc aggctgaggc actggcacat gtcacgcctg
     2341 cttcagactt ccacgggcag attggccagc atgcccgcct cccattttgt gggcatggat
     2401 ggggtacagg cttacctgca gacctattcc catgaaatct ctctcactac agactccaaa
     2461 aaaagccacc tgatcttccc ccagcccaat tatgctgaca gactcattag tgaagagagc
     2521 tgtgaaaaga gtgagcctct tctgatacct gataatatac acacaagcaa ggaagagccc
     2581 ggagctgctc agcaagcccc gcccaacact gactggcgtt tctctcaagc ccagagaccc
     2641 ggcacgagcg gatcccaaaa tggggatgaa accggcacct ggcccaacaa ccagttcgat
     2701 acagagatgc tgcaagccat gatcttggcc tctgccagtg aagccgctga tgggagctcc
     2761 actctgggag ggggcactgg cactatgggt ttgagcgctc gatatggacc ccagtttacc
     2821 ctgcagcacg tgcctgacta ccgccagaac gtgtacatcc ctggcagcaa tgccacactg
     2881 accaacgcag ctggcaaacg agatggcaag gctccggcag gcggcaatgg caacaagaag
     2941 aagtcgggca agaaagagaa gaagtaatat ggaggccagg ccttgagcca cagggcagcc
     3001 tccctcccca gccagtccag cttgtcctta cttgtaccca ggcctcagaa tttcagggct
     3061 caccccagga ttctggtagg agccacagcc aggccatgct ccccgttggg aaacagaaac
     3121 aagtgcccaa gccaacaccc cctctttgta ccctaggggg gttgaatatg caaagagagt
     3181 tctgctggga ccccctatcc aatcagtgat tgtacccaca taggtagcag ggttagtgtg
     3241 gatacacaca cacacacaca cacacacaca cacacacaca caaacaccat gccacactcc
     3301 cctagttaca gctgaactcc ccatcttcca acccagtcag gctcattcat ctccagcctc
     3361 cctctcccca ccccaccctt tcagtcaaca ccctctcttt gagccaggta gttgggctgt
     3421 tggggtgaca ggtgagctaa gggggctcct agttctgaac aggtgggaga gtattacaat
     3481 cctttggcct ctccttcagt tcagctgtcc cccaaagcat ggtttggtac cagtcttctc
     3541 atttcctcct agagcctgag accaatgctt aagttttggg gaacagtcac catgcccctg
     3601 gtactgatga tgcttgctgg atttttggga aggcattttg ctactaagcc tcttttcaat
     3661 gcctggggac taccagtctt ctgttctcca ttgtttgatg ttcccactgc atgctgtgac
     3721 ttcctactcc tcaaagaaga gactcctttg catgtctgga gacagtaggg ggtggtaaac
     3781 taaagggaag ctgagtgtat actgctggga gtgggggcag tggacaaaac agcctgttaa
     3841 tagggtcttg caaggggctc tgtacgtacc cagggtactg gctcaatcct caaattctag
     3901 ccatagacaa acatcaggcc agacccctcc ctcctggttc agcctgggca gcttgggctg
     3961 agccaccagg accaatggat ttaagctgac atttcagtcc aagaagactt ctaagtgagt
     4021 ttaagaccag agaggaaaga ggggcctctg tgggtgctgg gtactccaga ggtgcccttg
     4081 gtgggagggt cagtggtcct agcaggaagg gagcccagca aggtcattct tggaccctgg
     4141 gtctagtccg gtagctagaa caagggacca agtggctata aagtctcagc caatgatgag
     4201 gcttttcccc tgggcctctg ggcccctgta ttcctcaagc ccctggcctc caccttacca
     4261 ggtgccattt ctcagaaggc cactgcccag gcccccaggc cgccccctcg tggccacaga
     4321 ccggttaaag ccccccagtg cctccttgtg catagaactt cctctgcccg agcccttaca
     4381 gtagtgtaga agcccccttc ctcctcccgc tggtgtagaa tagccaatag tatagtgtgg
     4441 tgtgctttta cgtgatggcg agtgggcagc gggcggtggg ctgtgcgcag ccgtctgtcc
     4501 tttgaatctc aatctgcctg cgcggccagt gctgtgtttt gtgctgtgtc cacacgctgc
     4561 ggcgacccct ccctgtactg acttctctat aaaagcttct cttcgcatag tcacgtagct
     4621 cctgcccatc ccccttccga tatctctcgc aagttttata ctctaatatt tatatggctt
     4681 ttttcttcga aaattaaaaa taaaaaatgg tttcttctg
//
