LOCUS       XM_008772071            4895 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protocadherin gamma subfamily A, 4
            (Pcdhga4), transcript variant X1, mRNA.
ACCESSION   XM_008772071
VERSION     XM_008772071.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008772071.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008772071.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4895
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4895
                     /gene="Pcdhga4"
                     /note="protocadherin gamma subfamily A, 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 2 ESTs, 63 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     7 samples with support for all annotated introns"
                     /db_xref="GeneID:252894"
                     /db_xref="RGD:620725"
     CDS             2211..4748
                     /gene="Pcdhga4"
                     /codon_start=1
                     /product="protocadherin gamma-A4 isoform X1"
                     /protein_id="XP_008770293.3"
                     /db_xref="GeneID:252894"
                     /db_xref="RGD:620725"
                     /translation="MAAPYGSYRRGLIWICIYLGSLCYIRAEQIRYSVPEELEKGSAV
                     GNLAADLGLEPKKLGERGVRIVSRGKTQLFALNPRSGSLVTAGRIDREGLCDRSPKCT
                     ANLEILLEDKVRILAVEVEIIDVNDNAPSFGAQQREIKVAESEIPGTRFPLPEAFDPD
                     IGVNALQGYQLSSTGHFSLDVQNGPDGIKYPELVLEKALDREEEAFHYLVLTAFDGGD
                     PVRSGTATIQITVVDTNDNAPVFTQPEYHISVKENLPVGTRLLTVKASDPDEGANGEV
                     TYSFRNVRDKISQLFQLNSLTGDITMVGELDYEDSGFYDVDVEAHDGPGLRARSKVLV
                     TVLDVNDNAPEVTVTSLTSSIQETSPPGTVIALFNVHDSDSGENGLVTCSIPDNLPFR
                     LEKTYGNYHQLLIHRTLDREEVSDYNITITATDQGTPPLSTETYISLQVVDINDNPPT
                     FTHASYSAYIPENNPRGAAILSITAQDPDSGENAQVIYSLSEDTIQGAPLSSYISINS
                     NTGVLYALRSFDYEQFQDLKLLVTARDSGNPPLSSNASLSLFVLDQNDNTPEILYPTV
                     PTDGSTGVELTPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFSVGLHTGE
                     VRTARALLDRDALKQNLVVAVQDHGQPPLSATVTLTIAVSDNIPDILADLGNINPHID
                     QEDSDITLYLVVAVAVVSCVFLAFVIVLLIHRLRRWHSTRLLQAAGNGLSSMPTSHFV
                     GVDGVHAFLQTYSHEVSLTADSGKSHLIFPQPNYADTLISQESCAKSDPLLVSQDLLE
                     IKGDSSLQTTLQFLRRPLSVAVGQKKRETIFQTRKEPGRVTSCTNQP"
ORIGIN      
        1 ctgcctccaa gtgctgggat taaaggtgca cgccactctg cttaacaatc ttttattgcc
       61 tcacatccag ttaacaagtc cttccaaaaa ttaggcctct tagcacttat ttgtcttacc
      121 acaagtacca aagattacca catcttatat tagaatctct aaatctgggt caatatcaat
      181 ctcacttatg atttccctca agtttctctt cttcatgttt agggaggtaa ggcacacatg
      241 tgccatggtg agcatgtgga ggttaaagga caatgtgggc atcagctttc tactgtcaag
      301 catggaacct ccacgaccaa gctcctcaga ttgtcaggct tgtcgaaaaa gcttttccca
      361 actgagccat cttgtctacc tctccatggg tctttgacaa tttctcaacc atttgtgttt
      421 tgtgctttct tgttcatgat tgtggtaagg tctgtaatga tctttctact tatgagtcat
      481 tttgtatctc tcccattatt ttagtagaga tttctgtgag tcaaatctac agcgttttga
      541 tatttttgtg catattctca gttattttca acacacagca ttttaatccc ctgactcctg
      601 agcacttaac atatctttga agaactgtga aaaacacatc tagcctgctt tctcaaagac
      661 tacagtttta attctgcata ggtaataggc tttcatgatg ccttaaaagt ttagtcattt
      721 gtatgctaac tgttaaccga ggaatagttt aaagtatctc agattactct cgagctgtga
      781 accatgtgat ggaggtgatg cttccttggc tgtcaacata gttccttttc ctggctgttt
      841 ctgaaatcaa tggtaaagta atttaatgca ctggttaaaa aaataataga attgatgtcg
      901 gtaaaatgag accactgggt gtgtgtctta tataaaagaa acccctgaca tagctctggc
      961 tgtcctcaaa ctcacagaga ttcacctgcc tctgcctcct aagtactgaa atcaatggtg
     1021 tgtggcgcca cacctggcct gaaatattct aacaaccctt cagcttaact ttcttgcctt
     1081 tatgctatca tttaatttag tatttgtttt cctattattt gaatttgatt tgcattggta
     1141 attgactcaa taaacattga tacatgtttt agtctatgaa agttgctgtc gtaaagactg
     1201 aggacacatt ctgaatgtga cggcagtgac atgacgtata acttacaatg tcctatgtac
     1261 aaagctagct attttactcc acacctagaa ctttcctctt atactcattt gcacaagggt
     1321 aagagtatgt cttgagcagc tggcatcttt cctgcaatgg aactgaacag ttatccaagg
     1381 tttccaaggg cgagctcggg aggaaacttg gttctgcaat aaataggttg tagctagaac
     1441 tgcacctcca ggctccgtgg acctctgtct ctccacccct cccttttctt cactcttcat
     1501 agctattcct gttcctaaga gaaatgccta tgaccctcat ccaatacaaa gcactggaaa
     1561 tgatatcggg agataagcaa tgcaatgaaa agaggtagaa aacaatagtt tccaccatat
     1621 tatttctctg ataaattgaa atagtttgat gtatgagagg ctttggataa ttccaggatt
     1681 tttgttgcac attaaacaac acacttttga cctttatcct cccttaaaga agtgggttta
     1741 ggggctggag aaatggttca gtggttaaga gcacagactg ctcttccaga ggtcctgagt
     1801 tcagttccca gcacccacat ggtggctcac aaccatctgt aatgggatct gatgccctct
     1861 tctggtgtgt ctgaagacag ctacaatgta ctcatataaa taaaaattaa tttttaaaaa
     1921 aaagtgggtt tagcatgtgg tggtttttca aaaatttgtt gcaataacag tttagtactc
     1981 tgggtgtcgc tgttcaccac tcaggggtga aaatcaggta tttagtaaga ccaagatttc
     2041 cggagcataa aggactggtt atggtcttaa agaaagcagc aatctggact cctaggagca
     2101 ccaaggtcca acagtataag tacgttatct tgaaacccaa agattgaggg gctcatcagg
     2161 cctgcacaga aacaacgccc aagctcagga ctctctgcgg cgagactgca atggcggctc
     2221 cttacggatc ataccgcagg ggactaatct ggatctgcat ttaccttgga tccctatgct
     2281 acatccgcgc ggaacagatc cggtactctg tgccagaaga gctggaaaag ggctctgctg
     2341 taggtaatct cgccgcggac ctggggttgg agcctaagaa actgggagaa cgcggagtcc
     2401 gcatcgtctc cagaggtaag acccagctct ttgctctgaa tccgcgaagc ggcagtttag
     2461 tgactgcagg gaggatagac agggaagggc tctgtgacag atccccaaag tgtaccgcaa
     2521 atctggagat tctcctggag gataaagtga ggattctagc cgtagaagtg gaaattatcg
     2581 atgttaatga taatgccccc agttttggag cacagcagag ggaaataaaa gttgctgaaa
     2641 gtgaaattcc tggaacaaga tttcctcttc ctgaagcttt tgatccggac ataggggtga
     2701 acgccttgca gggttaccag ctcagctcca ctggtcattt ctccctggat gtgcaaaatg
     2761 gaccggatgg gattaaatac ccagaactgg tgctagaaaa agccttagac cgcgaggagg
     2821 aagcctttca ttacctggtt ctcaccgcct tcgacggagg cgacccggtt cgctctggta
     2881 ctgccacaat tcaaataaca gtcgtggaca ccaatgacaa tgctcctgta ttcactcagc
     2941 cagagtacca cattagtgtg aaggagaatt tgcctgtagg cacccggcta cttaccgtaa
     3001 aagccagtga cccggatgaa ggagccaatg gagaagtgac atattctttc cggaatgtaa
     3061 gagacaaaat atcccagctc ttccagctga attctctgac tggggacatc acaatggtgg
     3121 gggagctgga ttatgaggac tctggattct atgatgttga tgtagaagcc cacgatggac
     3181 ctggtcttcg agctagaagt aaggtactgg tgacagttct ggatgtaaat gacaatgctc
     3241 cggaggtcac agtcacctct ctcaccagtt ctatccaaga aacttctccc ccaggcacag
     3301 tgattgctct cttcaatgtg cacgacagtg actcgggaga gaatggcctt gtcacttgtt
     3361 ctattccgga taatcttcca ttcaggctgg aaaagaccta tggaaactat catcagttgt
     3421 tgatacacag gactctggac agggaagaag tctctgacta taacattaca ataactgcca
     3481 ccgaccaggg aactccacca ctgtctacag agacttacat ctcattgcag gtggtggaca
     3541 ttaatgacaa cccgcccacc ttcacccatg cctcctattc tgcctacatt ccagaaaaca
     3601 accctagagg agctgccatc ttatccataa cagcccagga cccagacagt ggtgagaatg
     3661 cccaggtaat ctactccctg tcagaggaca ccatccaggg ggcacccctg tcctcctaca
     3721 tctccatcaa ctccaatacc ggtgtccttt atgcactgcg ttcctttgat tatgagcagt
     3781 ttcaagactt gaagctattg gtgacagcca gggacagtgg gaaccctcca ctcagcagca
     3841 acgcgtccct gagcttgttt gtgctggacc agaatgacaa cacgcctgag atcctgtacc
     3901 ccaccgtccc cactgatggt tctactggcg tggagctgac ccctcgttct gcagaacctg
     3961 gatacctggt gaccaaggtg gtggcagtag acaaagactc aggacagaat gcctggctgt
     4021 cctaccgtct gctcaaagcc agcgagccag ggctcttctc ggtggggctg cacacaggtg
     4081 aggtacgcac agctcgggcc ctactggacc gagatgctct gaagcagaac ctggtggtgg
     4141 ctgtgcagga ccatggccag ccccctctct ctgccacagt cacactcacc atagccgtgt
     4201 cagacaacat cccagacatc ctggcggatt tgggcaacat taaccctcac attgaccaag
     4261 aggattcaga catcacattg tacctggtgg tagctgtggc tgtggtctct tgtgtcttct
     4321 tagcctttgt cattgtgctg ctgatacaca ggctccgtcg ctggcactca acccgcctgc
     4381 ttcaggctgc aggtaacggg ttgtcatcca tgccgacatc gcattttgtg ggtgtggatg
     4441 gcgtacatgc cttcctacag acctattctc atgaggtctc cctcacagca gactctggga
     4501 agagtcacct gatcttcccg cagcccaact atgcagatac gctcatcagc caggagagct
     4561 gtgcgaaaag tgaccctctc ctggtatcgc aagacttgct tgaaataaaa ggagattcca
     4621 gtcttcagac tacgttgcaa tttctgagaa gacctctgag cgtcgctgta ggtcaaaaga
     4681 agagagagac cattttccaa acgcgtaagg agcctgggag agtaacttcc tgtacaaacc
     4741 aaccatagag gagacccagt gcacaactag atacagcaaa ggtaagaaga aaagtggccc
     4801 taggcggatt tggccaccca caccaacaaa ggggcacagc ggcagcgcga gccaaaagaa
     4861 tgaggcgggg ctctgggagc agcccggcct ggtgg
//
