LOCUS       NM_001037153            4688 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus protocadherin gamma subfamily A, 11 (Pcdhga11),
            mRNA.
ACCESSION   NM_001037153 XM_344671
VERSION     NM_001037153.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4688)
  AUTHORS   Zou C, Huang W, Ying G and Wu Q.
  TITLE     Sequence analysis and expression mapping of the rat clustered
            protocadherin gene repertoires
  JOURNAL   Neuroscience 144 (2), 579-603 (2007)
   PUBMED   17110050
REFERENCE   2  (bases 1 to 4688)
  AUTHORS   Wu Q.
  TITLE     Comparative genomics and diversifying selection of the clustered
            vertebrate protocadherin genes
  JOURNAL   Genetics 169 (4), 2179-2188 (2005)
   PUBMED   15744052
REFERENCE   3  (bases 1 to 4688)
  AUTHORS   Murata Y, Hamada S, Morishita H, Mutoh T and Yagi T.
  TITLE     Interaction with protocadherin-gamma regulates the cell surface
            expression of protocadherin-alpha
  JOURNAL   J Biol Chem 279 (47), 49508-49516 (2004)
   PUBMED   15347688
REFERENCE   4  (bases 1 to 4688)
  AUTHORS   Zhang T, Haws P and Wu Q.
  TITLE     Multiple variable first exons: a mechanism for cell- and
            tissue-specific gene regulation
  JOURNAL   Genome Res 14 (1), 79-89 (2004)
   PUBMED   14672974
REFERENCE   5  (bases 1 to 4688)
  AUTHORS   Johnson KJ, Patel SR and Boekelheide K.
  TITLE     Multiple cadherin superfamily members with unique expression
            profiles are produced in rat testis
  JOURNAL   Endocrinology 141 (2), 675-683 (2000)
   PUBMED   10650949
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY574010.1.
            
            On Mar 16, 2006 this sequence version replaced XM_344671.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY574010.1, FQ099131.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132265, SAMD00132268
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4688
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..4688
                     /gene="Pcdhga11"
                     /note="protocadherin gamma subfamily A, 11"
                     /db_xref="GeneID:252897"
                     /db_xref="RGD:621232"
     exon            1..2561
                     /gene="Pcdhga11"
                     /inference="alignment:Splign:2.1.0"
     CDS             135..2936
                     /gene="Pcdhga11"
                     /codon_start=1
                     /product="protocadherin gamma-A11"
                     /protein_id="NP_001032230.1"
                     /db_xref="GeneID:252897"
                     /db_xref="RGD:621232"
                     /translation="MANQLQRLDRRALVPLCIFLGTLLTFGTGQIRYSVPEETDKGFF
                     VGNISKDLGLEPWEVADRGVRIVSRGKSQLFSLNPRGGSLVTAGRIDREELCDTVPSC
                     LLNLEILVEETLKIYGVEVEVMDINDNAPSFREEEVEIKVSEHTSPGSRFPLPKARDP
                     DAGMNSLQSYQLSPSSYFSLQVRGGTDGDKNPELVLEESLDREKEASHHLLLTALDGG
                     DPIRTGMVPIRVVVLDVNDHIPKFTQSVYRASVPENLSSGTRVLVVNATDPDEGINGE
                     VMYTFRKMKSKASEIFQLNSQTGEVLVGKPLDFEKYRFYEMEIQGQDGGGLLSTTMLL
                     ITVEDVNDNVPEITVTSSINSVPENSPSGTVIALLNVQDQDSGENGQVSCFIPSGLPF
                     KLEKTYGNYYKLVTDSELDREQVESYNITLIAKDQGSPPLSTATHLLLKVADANDNPP
                     VFTHSSYSAYIPENNPRGSSIFSVTAIDRDSRENAQVTYSLAEYSIQGSPLSSYVSIN
                     SDTGVLYALQSFDYEQFQTLQLGVTASDSGNPPLSSNISLTLFVLDQNDNTPEILYPS
                     LPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTG
                     EVRTARAMMDKDALKQSLVVTVQDHGQPPLSATVRLTVAVADSIPEVLEDLVSLESPA
                     NRDESSLTLYLVVAITAVSCIFLIFVMVLLALRLRRWHSSRLLQAASGLAGVPPSHFV
                     GVDGMHAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCGKSEPLLIPEDSAT
                     VLGKCEPTDIQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILAS
                     ASEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG
                     KAPAGGNGNKKKSGKKEKK"
     exon            2562..2620
                     /gene="Pcdhga11"
                     /inference="alignment:Splign:2.1.0"
     exon            2621..2709
                     /gene="Pcdhga11"
                     /inference="alignment:Splign:2.1.0"
     exon            2710..4688
                     /gene="Pcdhga11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacctctgtt cgctttggaa gatgttttga atgcggaata cctggaacct tgtagacaca
       61 aaagctgact cggaaaaaat aaattaaaaa taaaccggcg caagaccctc acggaacaac
      121 gctcacaccc agctatggcg aatcagcttc agcgcctgga ccgccgcgcg ctggtcccgc
      181 tgtgcatttt cctggggacc ttgctgacct ttgggacagg acaaatccga tattcggttc
      241 cagaagagac agataaaggc ttcttcgtag gcaacatctc caaagacctg gggctggagc
      301 cctgggaggt cgcggaccgc ggagtccgca tcgtctccag aggaaaatcg cagcttttct
      361 ctctgaatcc gcgaggcggc agcttggtga ctgcgggtag gatcgatcgt gaagagctat
      421 gtgatacggt gccctcctgc ttgctgaatt tggaaattct cgtggaggaa accctgaaga
      481 tttatggagt ggaggtggaa gtaatggaca ttaatgataa cgcccccagc ttccgggaag
      541 aagaggtaga gatcaaagtc agcgagcaca ctagtcctgg gtcgcgattt ccacttccta
      601 aggctaggga tccagatgca gggatgaact ccctccagag ctaccagctc agcccaagca
      661 gttatttttc cttgcaggtg agaggcggga ctgatgggga caagaatcca gagctagtgc
      721 tggaggagag cctggaccgg gagaaagagg catcccacca cctcctcctc acagccttgg
      781 atgggggaga tcccatccgc acggggatgg ttcccatccg cgtggtggtc ctcgacgtaa
      841 atgaccacat tccaaaattt acacagtctg tgtatagagc gagtgtgcct gaaaacctca
      901 gctccggaac gcgggtgctc gtggtaaatg ccacagaccc agatgagggt atcaacgggg
      961 aagtgatgta cactttccgg aaaatgaaaa gcaaagcttc tgaaatattt caactgaatt
     1021 ctcaaactgg agaagttcta gtcggaaagc cgctggattt tgaaaaatat agattctatg
     1081 agatggaaat tcaaggccaa gatggtgggg ggttgttgag caccaccatg ttgctgatca
     1141 cggttgaaga tgtgaatgac aacgttccag agataactgt cacctcttcc atcaactcag
     1201 tgccggaaaa ttctccttcg ggtacagtaa ttgctcttct aaacgttcag gatcaagatt
     1261 ctggagaaaa tggtcaggtc tcttgcttca ttcctagtgg tcttcctttt aagttagaga
     1321 aaacctatgg aaattattat aaattggtaa ccgatagtga actggaccgg gagcaggtag
     1381 agagctacaa tattacactg atcgccaaag atcagggaag tccacccttg tctacagcaa
     1441 ctcacctcct gctcaaagtg gcagatgcca atgacaatcc tccagttttc actcactcgt
     1501 cttactcggc ctacattcct gaaaacaacc ctagaggttc ctccatcttc tcagtgaccg
     1561 ccattgatag ggacagcaga gaaaatgccc aggtcacgta ctctctggct gagtacagta
     1621 tccagggatc acctctgtcc tcttacgttt ctatcaactc agacaccggt gtgctgtatg
     1681 ccttgcaatc cttcgactat gagcagttcc agaccctaca actgggagtg accgctagtg
     1741 acagtgggaa cccaccatta agcagcaata tttcactgac ccttttcgtg ctggaccaga
     1801 atgacaacac tccagagatc ctatacccct ctctccctac tgatggctcc actggtgtgg
     1861 aattggcgcc tcgctccgca gagccaggtt atttagtgac caaggtggtg gctgtagaca
     1921 gagactccgg gcagaacgct tggctgtcct accgcctgct caaagccagc gagccaggcc
     1981 tcttctccgt ggggctgcac acgggggagg tgcgcacggc ccgagccatg atggataaag
     2041 atgctctcaa gcagagcctc gttgtaactg tgcaggatca cggccagcct cctctctccg
     2101 ccactgtcag gctcaccgtg gcggtggctg acagcattcc agaggttctg gaggacttgg
     2161 ttagtctaga gtctcctgcc aaccgggatg agtcgagtct caccctctac ctagtggtgg
     2221 ccatcactgc agtctcctgc atcttcctca tctttgtcat ggtactgctg gctctcaggc
     2281 ttcggcgctg gcactcatca cgtctgctcc aggctgccag cggattggct ggcgtgcctc
     2341 cttcgcactt tgtgggtgtg gacgggatgc atgctttcct ccagacctat tcccacgaag
     2401 tttcgctcac tgcagactca aggaagagtc acctgatctt cccgcagccc aactatgcag
     2461 acacgctcat cagccaggag agctgtggga aaagcgagcc tctactaata cctgaagact
     2521 cagctacagt tttaggcaaa tgtgagccaa ccgatattca gcaagccccg cccaacactg
     2581 actggcgttt ctctcaagcc cagagacccg gcacgagcgg atcccaaaat ggggatgaaa
     2641 ccggcacctg gcccaacaac cagttcgata cagagatgct gcaagccatg atcttggcct
     2701 ctgccagtga agccgctgat gggagctcca ctctgggagg gggcactggc actatgggtt
     2761 tgagcgctcg atatggaccc cagtttaccc tgcagcacgt gcctgactac cgccagaacg
     2821 tgtacatccc tggcagcaat gccacactga ccaacgcagc tggcaaacga gatggcaagg
     2881 ctccggcagg cggcaatggc aacaagaaga agtcgggcaa gaaagagaag aagtaatatg
     2941 gaggccaggc cttgagccac agggcagcct ccctccccag ccagtccagc ttgtccttac
     3001 ttgtacccag gcctcagaat ttcagggctc accccaggat tctggtagga gccacagcca
     3061 ggccatgctc cccgttggga aacagaaaca agtgcccaag ccaacacccc ctctttgtac
     3121 cctagggggg ttgaatatgc aaagagagtt ctgctgggac cccctatcca atcagtgatt
     3181 gtacccacat aggtagcagg gttagtgtgg atacacacac acacacacac acacacacac
     3241 acacacacac aaacaccatg ccacactccc ctagttacag ctgaactccc catcttccaa
     3301 cccagtcagg ctcattcatc tccagcctcc ctctccccac cccacccttt cagtcaacac
     3361 cctctctttg agccaggtag ttgggctgtt ggggtgacag gtgagctaag ggggctccta
     3421 gttctgaaca ggtgggagag tattacaatc ctttggcctc tccttcagtt cagctgtccc
     3481 ccaaagcatg gtttggtacc agtcttctca tttcctccta gagcctgaga ccaatgctta
     3541 agttttgggg aacagtcacc atgcccctgg tactgatgat gcttgctgga tttttgggaa
     3601 ggcattttgc tactaagcct cttttcaatg cctggggact accagtcttc tgttctccat
     3661 tgtttgatgt tcccactgca tgctgtgact tcctactcct caaagaagag actcctttgc
     3721 atgtctggag acagtagggg gtggtaaact aaagggaagc tgagtgtata ctgctgggag
     3781 tgggggcagt ggacaaaaca gcctgttaat agggtcttgc aaggggctct gtacgtaccc
     3841 agggtactgg ctcaatcctc aaattctagc catagacaaa catcaggcca gacccctccc
     3901 tcctggttca gcctgggcag cttgggctga gccaccagga ccaatggatt taagctgaca
     3961 tttcagtcca agaagacttc taagtgagtt taagaccaga gaggaaagag gggcctctgt
     4021 gggtgctggg tactccagag gtgcccttgg tgggagggtc agtggtccta gcaggaaggg
     4081 agcccagcaa ggtcattctt ggaccctggg tctagtccgg tagctagaac aagggaccaa
     4141 gtggctataa agtctcagcc aatgatgagg cttttcccct gggcctctgg gcccctgtat
     4201 tcctcaagcc cctggcctcc accttaccag gtgccatttc tcagaaggcc actgcccagg
     4261 cccccaggcc gccccctcgt ggccacagac cggttaaagc cccccagtgc ctccttgtgc
     4321 atagaacttc ctctgcccga gcccttacag tagtgtagaa gcccccttcc tcctcccgct
     4381 ggtgtagaat agccaatagt atagtgtggt gtgcttttac gtgatggcga gtgggcagcg
     4441 ggcggtgggc tgtgcgcagc cgtctgtcct ttgaatctca atctgcctgc gcggccagtg
     4501 ctgtgttttg tgctgtgtcc acacgctgcg gcgacccctc cctgtactga cttctctata
     4561 aaagcttctc ttcgcatagt cacgtagctc ctgcccatcc cccttccgat atctctcgca
     4621 agttttatac tctaatattt atatggcttt tttcttcgaa aattaaaaat aaaaaatggt
     4681 ttcttctg
//
