LOCUS       NM_001109390            3171 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus protocadherin beta 9 (Pcdhb9), mRNA.
ACCESSION   NM_001109390 XM_001055473
VERSION     NM_001109390.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3171)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473974.1.
            
            On Oct 4, 2007 this sequence version replaced XM_001055473.1.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3171
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..3171
                     /gene="Pcdhb9"
                     /note="protocadherin beta 9"
                     /db_xref="GeneID:680047"
                     /db_xref="RGD:1596840"
     exon            1..3171
                     /gene="Pcdhb9"
                     /inference="alignment:Splign:2.1.0"
     CDS             192..2588
                     /gene="Pcdhb9"
                     /codon_start=1
                     /product="protocadherin beta 9"
                     /protein_id="NP_001102860.1"
                     /db_xref="GeneID:680047"
                     /db_xref="RGD:1596840"
                     /translation="MHFPIMEKLRKIHLNRQVMLFIFMMALVLVCSEATTRYSILEET
                     ESGSFVAHLAKDLGLGAGELAARSARVVSDDYKQRLLLDPETGDLILREKLDREELCG
                     SLDPCVLPFQVSLEKPVQYFQGELLIQDINDHAPEFPDRELLLKIPENSQPGTRFSLK
                     LAQDLDVGNNGLQEYRVSTNPHFHVLTRNNSEGKKYPELVQDRALDREEQAELSLTLI
                     ALDGGSPPRSGTALVRILIIDINDNAPEFVNSPYEVQVLESCPPDSPILTVLARDADA
                     GNFGSVSYGLFQASDEIQQTFSINETTGDMRLKKKLDFEKIKSYHVEIEATDGGGLSG
                     RGSVMIEVLDVNDNAPELTISSLTSSVPENAPETIISIFRVGDRDSGENGKAVCSISE
                     NLPFILKSTFKNFYTLVTESPLDRESRAEYNITISVSDLGTPRLTTQHTITVQVSDIN
                     DNAPAFTQTSYTMFVRENNSPALHIGTISATDADSGSNAHITYSLLPPQNPQLALVSL
                     ISINADNGQLFALRALDYEALQAFEFYVGATDQGSPALSSQALVHVMVLDDNDNAPFV
                     LYPLQNASAPCTELLPRAAEPGYLITKVVAVDCDSGQNAWLSFQLLKATEPGLFSVWA
                     HNGEVRTTRLLSERDVPKHRLLLLVKDNGDPARSATVTLHVLLVDGFSQPYLPLPEVA
                     RNAVQEDDDALTLYLVIALASVSSLFLLSVLLFVGVRLCRRGREVSLGGCSIPDGHFP
                     GHLVDVSGAGTLSQSYQYEVCLRGDSGTGEFKFLKPMVPNAGIEIMESPHCRESFVFN
                     "
ORIGIN      
        1 cgcttgttgc aatacagaac aaaagacgca ggcaagagct ttgcaagcac tgtggagcta
       61 tacagggttt tgggcaagaa tataatggac taatatgaga ataagagcta caccgtgaag
      121 tcacctgaag aggaaatcag aaatcagtct ttcaaagcat ttgggagact gctacaggat
      181 tggatgcaag catgcacttc cccatcatgg agaagctgag gaagattcac ctaaacaggc
      241 aagtaatgct gtttattttt atgatggctt tggttctggt ttgcagtgag gcaacaactc
      301 gatactctat tttagaggaa acagaaagtg gctcctttgt ggcccatctg gccaaggatc
      361 tgggtctggg agctggggag ctggctgcca ggtctgcacg ggtggtgtct gatgattaca
      421 agcagagatt gctgctggat cctgagactg gagatttgat tctgagagag aaactagacc
      481 gggaagagct gtgtggctct ttggatccct gtgtgctgcc tttccaggtg tctcttgaaa
      541 agccagtgca atattttcaa ggagaattat tgatccagga cataaatgat catgctccag
      601 aattcccaga tagagaattg ctcttgaaaa ttccggaaaa cagccagcca ggcacacgat
      661 tttcattgaa attagcccag gatttggatg tgggcaacaa tgggcttcaa gagtacagag
      721 tcagcaccaa ccctcatttt catgtcctca ctcgaaataa tagtgaaggc aagaaatacc
      781 cagagttggt gcaggacaga gccctggaca gagaggagca ggcagagctg agcttaaccc
      841 tcatagctct ggatggcggg tctccaccga ggtcaggaac agccttggtt cgaatcctga
      901 tcatagacat caatgacaat gctcctgagt ttgtgaacag cccctatgag gtgcaggttc
      961 tagagagctg tcccccagac tccccaatcc tgactgtgtt agcacgggat gcagatgctg
     1021 gcaactttgg gagtgtttcc tatggcttgt tccaagcatc agatgaaatc caacaaacat
     1081 tctcaataaa cgaaactact ggagacatgc gactgaaaaa gaaattggat tttgaaaaaa
     1141 ttaaatctta tcatgtggaa atcgaggcca cagacggagg agggctttct gggagaggtt
     1201 ctgtgatgat agaggtgttg gatgtgaacg acaatgctcc agagctgacc atatcttcac
     1261 tgaccagctc agtcccagaa aatgctcctg agaccataat cagcatcttc agagttggag
     1321 acagggattc cggagagaat ggaaaggcgg tttgctctat ctcagaaaac ctgccattca
     1381 ttctaaaatc cactttcaag aatttctaca ctctggtgac agagagccct ctggacagag
     1441 agagtagagc tgaatacaac atcaccatct cagtctcaga cctgggcaca cccaggctca
     1501 caacccagca caccataaca gtgcaggtgt ctgacatcaa cgacaacgcc cctgccttca
     1561 cccaaacctc ctacaccatg tttgtccgcg agaacaacag ccctgccctg cacataggca
     1621 ccatcagtgc cacagatgca gactcaggct ccaatgccca catcacctac tcactgctgc
     1681 cgccccaaaa tccacagctg gcccttgtct cgctcatctc catcaacgca gacaatgggc
     1741 agctgttcgc gctcagggcg ctggactatg aggccctgca ggccttcgaa ttctatgtgg
     1801 gtgccacaga ccaaggttca ccagcgctca gcagccaggc tctggtgcat gtgatggtgc
     1861 tggacgacaa tgacaatgcg cccttcgtgc tctacccgct gcagaacgcc tctgcaccct
     1921 gcaccgagct gctccccagg gcagcggagc caggatacct gatcaccaag gttgtggctg
     1981 tggactgcga ctctggccag aatgcctggc tgtcattcca gttgctcaag gccacagagc
     2041 ccgggttgtt tagcgtgtgg gcacacaatg gcgaggtacg caccaccagg ctgctgagcg
     2101 agcgagatgt gcccaagcac aggctacttc tgctggtcaa ggacaatggg gaccctgcgc
     2161 gctctgccac agtcacgttg cacgtgctac ttgtggatgg attttcacag ccctatctgc
     2221 ctctgccgga agttgctcgg aacgccgttc aggaagatga tgatgctctt acactgtacc
     2281 tggtcatagc cttggcatct gtgtcttctc tcttcctctt gtctgtgctg ctgtttgtgg
     2341 gggtgaggct gtgcaggagg ggcagagagg tctctctggg tggctgctct attcctgatg
     2401 gacactttcc tggccacctg gtggatgtca gtggagcagg gaccctgtcc caaagttacc
     2461 agtatgaggt gtgtctgagg ggagactctg ggactggtga gttcaagttc ctgaaaccca
     2521 tggtccccaa tgctgggata gaaattatgg aaagtcccca ctgcagggaa agctttgtat
     2581 tcaactaagt attctaaatg gtccaattaa tcctaaaaat taatatactt tttgtgggta
     2641 agtgtaatat taactagttt tcaaaaaact gctaccttgt gtgcaggtct ccaacagctc
     2701 tcatttttcc tactcatact aagcatgctt aggctgtcat tatagcacat gttaagtatg
     2761 aggtttttat gtagtcaatg tctttgatga ctaatattct cataactaca agtaactcaa
     2821 gtaacagaat ttcttcaaac tttcaaaaga aaatttgaat ttctctatat aattatgaca
     2881 cctgttttaa ctgtgtcttt tatcgtttta aggttagaac gcttagaatt ttatttggcc
     2941 ttagcatact tacttttcct agatcatgtt agatgccttt caatagaaca ctcaattgtg
     3001 acacttgtta cgagcatcat aaatgttagt gtttgattta cgtttgttcc tgaaagtgtt
     3061 ttaaaagcaa tcaggctaaa actttccatt aattatattt taataaaaat tgaaagagag
     3121 catattttat aatttgtcat ccctttcatg aaataaaatt gttaatccat t
//
