LOCUS       NM_001408915            3855 bp    mRNA    linear   ROD 07-JAN-2025
DEFINITION  Rattus norvegicus protocadherin beta 13 (Pcdhb13), mRNA.
ACCESSION   NM_001408915 XM_017601097
VERSION     NM_001408915.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3855)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Jul 1, 2022 this sequence version replaced XM_017601097.2.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643291.40425.1,
                                        SRR22582416.988426.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3855              JAXUCZ010000018.1  29420029-29423883
FEATURES             Location/Qualifiers
     source          1..3855
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..3855
                     /gene="Pcdhb13"
                     /gene_synonym="Pcdhb6l"
                     /note="protocadherin beta 13"
                     /db_xref="GeneID:108348233"
                     /db_xref="RGD:11376545"
     exon            1..3855
                     /gene="Pcdhb13"
                     /gene_synonym="Pcdhb6l"
                     /inference="alignment:Splign:2.1.0"
     CDS             297..2687
                     /gene="Pcdhb13"
                     /gene_synonym="Pcdhb6l"
                     /note="protocadherin beta-6-like"
                     /codon_start=1
                     /product="protocadherin beta-6-like precursor"
                     /protein_id="NP_001395844.1"
                     /db_xref="GeneID:108348233"
                     /db_xref="RGD:11376545"
                     /translation="MSHTEVWCKTRQVMILITFMLLWEVGSESIQYAMLEETGRGTFV
                     ANLTKDLGLRVGELAAREARVVFKGNRQYLQLDPQTQDLVLNENLDREELCGSTEPCV
                     LSFRVLLKNPLQFYQAELRVIDINDHAPEFPAKEMLLKISEITPPGKIFPLKMAQDLD
                     VGSHSIQSYTVNDNPHFHVLTRNRSDGRKFPELVLNKALDREEQDQLRLKLTAVDGGS
                     PPRFGTTEIQILVLDINDNAPEFAQELYEVQVPENNPVGSLLITVSARDLDTGSFGEV
                     SYGLSQDDGLNEPFEINTKTGEVRLKSMLDFEAFPFYHVDVEALDGGGLTGKCSLVVQ
                     VLDMNDNAPEVILSSLNSPIPENLPGIIVAVFSVSDADSGSNQQVMCSIDDNLPFLLR
                     PSMENFYTLETDGALDRESRAEYNITITVTDMGTPRLTTQHTITVQVSDINDNAPTFT
                     QTSYTLFVHENNSPALHIGTISATDSDSGTNAHITYSLLPRNDPHLALSSLVSINADN
                     GQLFALRALDYESLKAFEFQVNATDQGSPALHSQALVRVVVLDDNDNAPFVLYPLQNA
                     SVPCTELLPRVAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRT
                     TRLLSERDVSKHRLLLLVKDNGNPPRSASTTLHVLLVDGFSQPYLPLPEVAQDSTKDV
                     EDTLTLYLVIALASVSSLFLFSVVLFVVVRLCRRVRAASLNGYSMPEGHFPGHLVDVS
                     GSGTLSQSYQYEVCLRGDTGTGEFKLRKAINPHFPSVEPERNTEQSPTLRNSFLFI"
ORIGIN      
        1 ctcagtgttg atctgaagat ttctcatgaa gttattgatt tgaacgcatg gtggcggtgt
       61 aggctaagag aatgagtaag aacccttgag aatcctcagg caccaattca cctagaagct
      121 gacgcaaaaa tacaggaacc atttactgct gcagctaggg attccgggga agaggagtca
      181 ctgagaatct gtaagatcaa atctacaatt ccacagcaaa ggttttcggg aaggccaaag
      241 ttacctcagt gcgtaagagc tggaagagat ttttcctctg ggatcagcca atagagatgt
      301 cacacacaga agtgtggtgc aagacaaggc aagtgatgat tttgattaca ttcatgcttt
      361 tgtgggaggt gggctcagaa tcaattcagt atgccatgct ggaggagaca ggacgtggca
      421 catttgtggc caacctgact aaggacttgg gactaagggt gggagaactg gctgctcggg
      481 aggctagagt ggttttcaag gggaacagac agtatttaca gcttgaccca cagacccagg
      541 atttggtact aaatgaaaac ctggaccggg aagagctgtg tggctccaca gaaccttgtg
      601 tgctgtcttt ccgggtgtta ctaaaaaatc ctttgcagtt ttatcaagct gaactgagag
      661 ttatagatat aaatgaccat gccccagagt ttcctgccaa agaaatgctc cttaagatat
      721 cagaaataac tccacctgga aagatattcc ctttgaaaat ggcacaggac ttggatgtgg
      781 gcagccacag cattcaaagc tacactgtca atgataaccc tcacttccac gtgctcactc
      841 gaaaccgcag cgatggcagg aagttccctg agctagtgtt gaacaaggcg ttggaccgtg
      901 aggagcaaga ccagctcaga ctaaagctca ctgcagtgga tggtgggtct ccgcccaggt
      961 ttgggaccac agagattcaa atactggtct tagacataaa tgacaatgcg ccagaatttg
     1021 ctcaggagct ctatgaggtt caagtccctg agaacaaccc tgttggctca ctgcttatta
     1081 ctgtctcagc aagagatttg gacacaggat ccttcgggga agtgtcctat ggactgtctc
     1141 aagatgatgg ccttaatgag ccttttgaaa taaacactaa gacaggagaa gttcgactga
     1201 aaagcatgtt ggattttgaa gcatttccat tttaccatgt ggatgtcgag gccctagatg
     1261 gtggtgggct aacaggaaaa tgctctttag tcgtccaagt attggacatg aatgacaatg
     1321 ctccggaagt gatcttatcc tcactcaaca gccccatccc tgaaaatttg ccaggtatca
     1381 tagtggcagt attcagcgtt tcagatgcag actcaggaag taaccagcag gttatgtgtt
     1441 ccatagatga caatcttcca tttcttctaa gaccatctat ggagaatttc tatactctgg
     1501 aaacagatgg ggcactagac agagagagca gagctgagta caacatcacc atcacagtca
     1561 ctgacatggg cacacccagg ctcacaaccc agcacaccat aacagtgcag gtgtctgaca
     1621 tcaacgacaa tgcccccacc ttcacccaaa cctcctacac cctgttcgtc catgagaaca
     1681 acagccctgc cctgcacata ggcaccatta gtgccacaga ctcagactca ggcaccaatg
     1741 cccacatcac ctactcactg ctgccgcgta acgacccgca tctggccctc tcctcgctgg
     1801 tctccataaa tgcagacaat gggcaactgt ttgctctcag ggcactggac tatgagtccc
     1861 tgaaggcctt cgagttccaa gtgaacgcca cagaccaagg ctctcctgca ctccacagcc
     1921 aagcgctggt tcgcgtggtg gtgctcgacg acaatgacaa tgcacccttt gtgctctacc
     1981 ctctgcagaa tgcctctgtg ccctgcacag agctgctgcc cagggtggct gagcctggct
     2041 acctggtcac taaggtggtc gctgtagatc gcgactcagg ccagaatgcc tggctgtcat
     2101 tccagttgct caaggccacc gaacctggac tattcagtgt gtgggcgcac aatggcgagg
     2161 tacgcaccac taggctattg agtgagcgtg acgtgtccaa gcacaggctg ctgctgctgg
     2221 tcaaggacaa tggcaaccct ccgcgctctg ccagcaccac gctgcatgtg ttgctggtag
     2281 atggcttctc tcagccctac ctacctctcc ccgaggtagc gcaggactcc acgaaggatg
     2341 ttgaagatac gctcaccctg tacctggtta tcgccttagc atctgtgtct tcgctcttcc
     2401 tcttttctgt ggtgctgttc gtggtggtga ggctgtgcag gagggtcagg gcggcctctc
     2461 tgaatggcta ctctatgcct gagggacact ttcctggcca tctggtggat gtcagcggct
     2521 ctgggactct ttcccagagc taccagtatg aggtgtgtct gaggggagac actgggactg
     2581 gtgagttcaa attgcgtaag gcaattaacc cacactttcc ttctgtggaa cctgagagga
     2641 acacagagca aagtcctact cttcggaata gcttcctatt catctaaata ctttagtgta
     2701 ctagtaaatt ctgcttaagc ttagaaatac cttttaacct atacctgcat gctattgatg
     2761 tgtattagca gaagcttatg tccttacttt ttggaatagt gcctggaaat ggaatccagt
     2821 gtctcatgca tgttaagcaa aataaactac tgagctaaat caattctcct ttctttcctt
     2881 ttctattttg gttttcagag acagggatct cctatttctt ttttcttttt cttgtttatt
     2941 tatattctga atgttgcccc cttcctggta caccctccaa gagttcttca ccccatcccc
     3001 cctctccttt gcctctgaga gggtgatccc ccacccatcc acccactcac ctccagctca
     3061 cctccccctc acatctcctt tctctggggc atcaagggag acaggttttt caatgtaacc
     3121 ctggctatcc tggaactcat tctgtagatc cactgcctct ctcttgtgag tggtggaagt
     3181 aaaagggtgt gccattgtgt agcctgggat ggtctgaaac ttattaaatt gacctggctg
     3241 ccttggaact cagagagacc tacctgcatc tgtcacctta gtactgtgac taaaggcttt
     3301 tccatcatgc ttggcctggc ctgtaccatt gctattattt ttgagattgt actttttaga
     3361 aagacagttt ctggagattc cacttgttct ctattatgct tcatagtttg ttttttaatt
     3421 agtagcacta acctgtatct gacaagttaa gtaaaatatt ttaatagaat atgaaatcat
     3481 gcaatctttt aagtatatta catgtaaagc ctttgagatt tcattttaaa caagtgatta
     3541 attttactat tggtttggag aaaattttaa atgtaaatac ttggtattac tgaacgtttt
     3601 agtctcgtgt tggttatcag gtgcatctct aaatgtaagg aactctaaac actaagacac
     3661 ttaccctatg tatgcataac taggaatgtc tctgtgcatt ttaataatca acacatatta
     3721 cttaagtgta gattttactg aactgtcaat tcattttaaa ttatagtttg tgagcgttgt
     3781 gtaaggagag tatggtcttt tagcatcaag atatttgtaa aagttgaata aatctttgct
     3841 ttttgttacc agtca
//
