LOCUS       NM_001014780            3363 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus protocadherin beta 6 (Pcdhb6), mRNA.
ACCESSION   NM_001014780 XM_226002
VERSION     NM_001014780.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3363)
  AUTHORS   Wu,Q.
  TITLE     Comparative genomics and diversifying selection of the clustered
            vertebrate protocadherin genes
  JOURNAL   Genetics 169 (4), 2179-2188 (2005)
   PUBMED   15744052
REFERENCE   2  (bases 1 to 3363)
  AUTHORS   Zhang,T., Haws,P. and Wu,Q.
  TITLE     Multiple variable first exons: a mechanism for cell- and
            tissue-specific gene regulation
  JOURNAL   Genome Res 14 (1), 79-89 (2004)
   PUBMED   14672974
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Feb 15, 2008 this sequence version replaced NM_001014780.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26360176.2075950.1,
                                        SRR26643298.73642.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3363              JAXUCZ010000018.1  29320391-29323753
FEATURES             Location/Qualifiers
     source          1..3363
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..3363
                     /gene="Pcdhb6"
                     /note="protocadherin beta 6"
                     /db_xref="GeneID:291653"
                     /db_xref="RGD:1306123"
     exon            1..3363
                     /gene="Pcdhb6"
                     /inference="alignment:Splign:2.1.0"
     CDS             1..2319
                     /gene="Pcdhb6"
                     /codon_start=1
                     /product="protocadherin beta 6"
                     /protein_id="NP_001014780.1"
                     /db_xref="GeneID:291653"
                     /db_xref="RGD:1306123"
                     /translation="METALAKTPEKRQVVFLALLLLLWEAGSEAISYSMSEETESGYL
                     VANLAKDLGFRAGELATRGARIHHRGNKDLLQLDAETGNLLLKEKPDREALCGATEPC
                     VLHFQVILENPVQFFQTDLQLTDINDHSPEFPDTEMLLKIQEIAQPGTVFPLKAAQDS
                     DIGSNAVQNYTVSPNLHFHVVTHSRTDGRKYPELVLDRALDREEQPELTLILTALDGG
                     APPKSGTTTVRIEVVDINDNAPQFVKSLYAVEVPEDSPLNALVVTVSARDLDAGIHGN
                     VAYSLFQDSGGSPPFVIDEISGEIRLKGALDFEATPYYNMEIVATDSGGLSGKCTVAI
                     QVVDVNDNAPKLTISSLTRSIPENAPEAVVAVFSVSDPDSGDNGRMVCSTQNELPFLL
                     KPTYENYYTLVTEGPLDRESRAEYNITITVSDLGTPRLTTQHTITVQVMDINDNAPVF
                     TQTSYTMFVHENNSPALHIGTISATDSDSGSNAHITYSLLPPRDPQLSLASLVSINID
                     NGQLFALRALDYEVLQGFEFRVSATDQGSPQLSSQTLVSVVVLDDNDNAPFVLYPLQN
                     ASASCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQMLKATEPGLFSVWAHNGEVR
                     TTRLLSERDVPKHRLLLLVKDNGEPPLSASVTLQVLLVDGFSQPYLPLPEVRRDPSQE
                     EDLLTLYLVVALASVSSLFLLSVLLFVGVRLCRRARETSLGACSVPEGHFPGHLVDVS
                     GMGTLSQSYQYEVCLTGDSGTTDFKFLNHHSQ"
ORIGIN      
        1 atggagacag cgctagcaaa aacaccagag aaaaggcaag tggtctttct tgctctattg
       61 ttgctattgt gggaggctgg ctctgaggca attagctatt cgatgtcaga agaaacggag
      121 agtggctact tggtagctaa cctggcaaaa gatctggggt tcagggctgg ggaactggcc
      181 actagagggg cacgaatcca tcacagagga aacaaagacc tcttgcagct ggatgcagag
      241 acaggaaatt tgcttctgaa ggaaaagcca gatcgcgagg cactgtgtgg ggcgacagaa
      301 ccctgtgtgc tgcacttcca ggtcatactg gaaaaccctg tgcagttctt tcaaacagac
      361 ctgcagctca cagatataaa tgaccactct ccagaattcc ctgacacaga aatgctccta
      421 aaaattcaag aaattgccca gccaggaact gtgtttcctc tgaaggcagc tcaggactct
      481 gacataggga gcaacgctgt tcagaactac acagtcagtc ccaacctcca tttccacgtc
      541 gttactcaca gtcgcacaga tggcaggaaa tacccagagc tggtgctgga cagagccctg
      601 gatagggagg agcagcctga gctcacttta atcctcactg ctctggatgg gggtgctcca
      661 cccaagtctg ggacaacgac ggttcgaatt gaagtcgtgg acatcaatga taacgctccc
      721 caatttgtaa agtctctcta tgctgtggag gtccctgaag atagtcccct caatgcctta
      781 gttgtcacag tctctgccag agacttagat gctgggatac atggcaatgt agcctattct
      841 ctgtttcaag actccggagg ttctccgcca tttgtaatag atgaaatttc aggagaaatt
      901 cgccttaaag gggcattgga ttttgaggca actccatact ataacatgga aattgtagcc
      961 acagacagcg gaggtctttc aggaaaatgc actgtggcta tacaggtggt ggatgtgaac
     1021 gacaacgccc ctaaactcac catatcttcg ctcactcgtt ccatcccaga aaatgctcct
     1081 gaggctgtag ttgctgtttt cagtgtttct gacccagatt ctggggataa tggaaggatg
     1141 gtttgttcta ctcagaacga acttccattt cttttgaagc ctacatacga gaattactac
     1201 actttagtga cagaagggcc actagacaga gagagcagag ctgagtacaa catcaccatc
     1261 actgtctcag atctgggcac acccaggctc acaacccagc acaccataac agtgcaggtg
     1321 atggacatca atgacaatgc ccctgtcttt acccaaacct cctacaccat gtttgtccac
     1381 gagaacaaca gccccgccct gcacataggc accatcagtg ccacagactc agactcaggc
     1441 tccaatgccc acatcaccta ctcgctgctg ccacctcgag acccacagct gtctcttgcc
     1501 tcactggttt caatcaacat agacaatggg cagctgttcg cactcagggc gctggactat
     1561 gaggtcctgc agggctttga gttccgcgtg agcgccacag accaagggtc tccccagctc
     1621 agcagtcaga ctctggtgag cgtggtggtg ctggacgaca atgacaatgc gcccttcgtg
     1681 ctctacccac tgcagaacgc ctctgcatcc tgtaccgagc tgctgcccag ggcagcagag
     1741 cctggctatc tggtcactaa ggtggtggct gtggatcgcg actctgggca gaatgcctgg
     1801 ctgtcattcc agatgctcaa ggccacagag cctgggctgt tcagcgtgtg ggcgcacaat
     1861 ggcgaggtgc gcaccaccag gcttctgagc gagcgtgatg tacccaagca caggctgctg
     1921 ttgctggtca aggataatgg cgagcctcca ctctctgcca gtgtcactct gcaggtactg
     1981 cttgtggatg gcttctctca accctacctg cctctgccag aggtgaggcg tgacccctca
     2041 caagaggaag acttgcttac tctgtacctg gttgttgcct tggcctctgt gtcttcgctg
     2101 ttcctcctgt ctgtgttatt gttcgtggga gtaaggttgt gcaggagggc cagggagacc
     2161 tctctgggtg cctgctctgt gcctgaggga cactttcctg gccacttggt ggatgtcagt
     2221 ggtatgggga cattgtccca gagctaccag tatgaggtgt gtctgaccgg agattctggg
     2281 acaacagatt tcaaatttct gaaccatcat tcccaatagt gtccttcagg aaccctcatt
     2341 aaacttcagt gttagggtca cccatgtttt ggtaactgaa tacgattagt ttcttggcta
     2401 ttaacatttt tgtttgcatt taacaatttt tccttgtgac aatatattcc tatgttgatt
     2461 ttactcataa tttttctttc attactttct tttctttctt ttttttattt ctgtgcttcg
     2521 tattttacca atccaatctt attgtaggtt ttttcttcac taatttgaga ggggaataag
     2581 aaactttgct gtgcttctat ggtcagttca aataccgttt ataggaatca tttctctctc
     2641 tgcatttatg gctatatttg gaaatatacc cacttcagat tgtatcttgt tgaggctatg
     2701 catgtaactt gctaagcagt atttgttttg tttttaacat tcaccactgt gcattaacta
     2761 tgctgacgtg caatgttcat tgggatattt tcagagatgc atataccaca ccatgataat
     2821 gatcacctaa ttaccacctt ctattttctc cccattagcc tcctaaaagc ctcatgtgct
     2881 tcctgtgtta gagtgtgata attgagccta aatgatctgc agtttcattt attcccaaaa
     2941 gcaacaattt tattcttctt gatgcctaag taaggcaatg tgcatgtgtg tgttttccta
     3001 caccacacac ttattataca tgacggcaaa gtagctttga ctgcagctga tgaagtgtga
     3061 ccatatgata caatcattgt catattttac atgttttgta cacaaacaga agtagggcaa
     3121 ttgatttatt atctttactg actaccacaa ttcgtatttc aagattttat ttgcttatat
     3181 acaaccctat attgctacta aaatgcacca aaaatgatgt ttcttgattt aatccattgt
     3241 aaatcatgta gtatgctttc atcttgtacg agtggacatt tatttagcga ggcatgtgct
     3301 cagttgataa gtagaattgt aaatcatgga tataaatgat gacacattaa accttcaaca
     3361 gaa
//
