LOCUS       NM_001114602            2583 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus protocadherin beta 5 (Pcdhb5), mRNA.
ACCESSION   NM_001114602 NM_001014781 XM_001064542 XM_226003
VERSION     NM_001114602.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Wu,Q.
  TITLE     Comparative genomics and diversifying selection of the clustered
            vertebrate protocadherin genes
  JOURNAL   Genetics 169 (4), 2179-2188 (2005)
   PUBMED   15744052
REFERENCE   2  (bases 1 to 2583)
  AUTHORS   Zhang,T., Haws,P. and Wu,Q.
  TITLE     Multiple variable first exons: a mechanism for cell- and
            tissue-specific gene regulation
  JOURNAL   Genome Res 14 (1), 79-89 (2004)
   PUBMED   14672974
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Jun 28, 2018 this sequence version replaced NM_001114602.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643298.73641.1,
                                        SRR26643294.57249.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2583              JAXUCZ010000018.1  29302466-29305048
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..2583
                     /gene="Pcdhb5"
                     /note="protocadherin beta 5"
                     /db_xref="GeneID:291654"
                     /db_xref="RGD:1304665"
     exon            1..2583
                     /gene="Pcdhb5"
                     /inference="alignment:Splign:2.1.0"
     CDS             190..2583
                     /gene="Pcdhb5"
                     /codon_start=1
                     /product="protocadherin beta-4"
                     /protein_id="NP_001108074.2"
                     /db_xref="GeneID:291654"
                     /db_xref="RGD:1304665"
                     /translation="MEKLERNHANRQVIPFLFMLLWGQVLMVPTRYSVLEEAERGSFV
                     AHLAKDLGLGAGELAARSARVVSDFDNQQFMVDPDTGDLLLREKLDREELCGSVDPCV
                     MHFQVFLEKPVQFFQGELLIQDINDNSPEFPDKELLLKIPENSQPGTRFPLNLAQDLD
                     VGSNGLQEYRVSTNPHFHVLTRNNSEGKKYPELVQDRALDREEQAELSLTLMALDGRS
                     PPRSGTALVRILIMDINDNAPEFVNSPYEVQVPESCPPDSPILTVLAPDADAGNFGSV
                     SYGLFQASDEIQKTFSINEVTGEIRLKKELDFEKTESYRVEIEATDGGGLSGKGSVVI
                     EVLDVNDNAPELTISSLTSSVPENAPETVVAIIRIRDRDSGDNGKMICSISDHVPFTL
                     KPSYKNFYTLVTERALDRESRAEYNITISVSDQGTPRLTTQHTITVQVSDINDNAPAF
                     TQTSYTMFVHENNSPALHIGTISATDSDSGSNAHITYSLLPPYDPQLALDSLISINPD
                     NGQLFALRALDYEALQAFEFRVAATDGGSPALSSQALVRVMVLDDNDNAPFVLYPLQN
                     ASAPYTELLPRAAEPGYLITKVVAVDRDSGQNSWLSFQLLKSTEPGLFSVWAHNGEVR
                     TTRLLSERDVPKHRLLLVVKDNGEPPRSASITLQVVLVDGFSQPYLPLPEVARDSAKD
                     GADLLTLYLVIALASVSSLFLLSVLLFVGVRLCRRARAASLGDCTVPEGHFPGHLVDV
                     SRAGTLSQSYQYEVCLTGDSGAGEFKFLKSMVPNLMVQDPGREIAENLHCRDSFVFS"
ORIGIN      
        1 tttgtgttgc aagacagaat caaaaaaaca cagggacagg aaacatctga aggaataccg
       61 gaccctgaat gggtttgggc cggggtatac tacatgaaca aagattcctc cagccaagaa
      121 aatagaattt agcattcaag ctattcagag gctgctgaag aactggatgt aagcactcgt
      181 gtttccacca tggagaagct ggagagaaat catgcaaaca ggcaagtgat tcctttcctt
      241 tttatgctgc tttggggtca ggttctcatg gtgcctactc ggtactctgt cttggaggaa
      301 gctgaaagag gctcctttgt agcccatctg gccaaggatc tggggctggg agctggggag
      361 ctggctgcca ggtctgcacg ggtggtgtct gactttgaca accagcaatt catggtggat
      421 ccggacactg gagatttgct tctgagggag aaactagaca gggaggaatt gtgtggctct
      481 gtggatccct gtgtgatgca tttccaggtg ttcctagaaa aaccagtgca gttttttcaa
      541 ggagaattat tgatccagga tataaatgac aactcgccag aattcccaga taaagaattg
      601 ctcttgaaaa taccggaaaa cagccagcca ggcacgcggt ttccattgaa tttagcccag
      661 gatttggatg tgggcagcaa tggacttcaa gagtacagag tcagcaccaa ccctcatttt
      721 catgtcctca ctcgaaataa tagtgaaggc aagaaatacc cagagttggt acaagacaga
      781 gccctggaca gagaggagca ggcagaattg agcttaacgc tcatggctct ggatggcagg
      841 tctccaccta ggtcaggaac agctctggtt cgaatcctga tcatggatat caatgacaat
      901 gctcctgagt ttgtgaacag cccctacgag gtgcaggtcc cagagagctg tcccccagac
      961 tccccaattc tgactgtctt agcaccggat gcagatgctg gcaactttgg gagtgtttcc
     1021 tatggcttgt tccaagcatc agatgaaatc cagaaaactt tctcaataaa tgaagtcact
     1081 ggagaaatac ggctgaagaa ggaattggat tttgaaaaaa ctgaatcata ccgtgtagag
     1141 attgaggcca cagatggagg agggctttct gggaaaggat ctgtggtgat agaggtgttg
     1201 gatgtgaacg acaatgcccc agagctgacc atatcttcac tgaccagctc agtcccagaa
     1261 aatgctccgg aaactgtggt tgctattatc cgaatacgag atagagattc tggagacaat
     1321 ggaaaaatga tttgctctat ttcagatcat gtgccattca ctttaaaacc ctcttacaag
     1381 aacttttaca ctctggtgac agagagggca ctggacagag agagcagagc tgagtacaac
     1441 atcaccatct cagtctcgga ccagggcaca cccaggctca caacccagca caccataaca
     1501 gtgcaggtgt ctgacatcaa cgacaacgcc cctgccttca cccaaacctc ctacaccatg
     1561 tttgtccacg agaacaacag ccccgccctg cacataggca ccatcagtgc cacagactca
     1621 gactcaggct ccaatgccca catcacctac tcactgctac cgccctatga tccacagctg
     1681 gccctcgact cgctcatctc catcaaccca gacaatgggc agctgttcgc gctcagggcg
     1741 ctggactatg aggccctgca ggccttcgag ttccgagtgg ccgccacaga tggaggttca
     1801 cccgcgctaa gcagccaggc tctggtgcgc gtgatggtgc tggatgacaa tgacaatgca
     1861 cccttcgtgc tctacccgct gcagaacgcc tctgcaccct acacagagct gcttcccagg
     1921 gcagcagagc ccggatacct gatcaccaag gtggtggcag tggaccgcga ctctggccag
     1981 aactcctggc tgtcgtttca gctgctcaag tccacggagc ccgggttgtt cagtgtgtgg
     2041 gcgcacaatg gcgaggtgcg taccaccagg ctgctgagtg agcgcgatgt gcccaaacac
     2101 aggctgctgc tggtggtcaa ggacaatggt gagcctccac gctctgccag catcacactg
     2161 caggtggtgc ttgtggatgg cttttcacag ccttatctgc cactgcctga ggtagctcgt
     2221 gactctgcaa aggatggtgc ggacttgctc acgctctatc tggtcatcgc cttggcctct
     2281 gtgtcttctc tatttttgtt gtctgtgctg ctgttcgtgg gggtgaggct gtgcaggaga
     2341 gcaagggcag cctctctggg tgactgcact gtgcctgagg gccactttcc tggccacctg
     2401 gtagatgtca gtcgtgcagg gaccctgtcc cagagctacc agtatgaggt gtgtctgaca
     2461 ggagactctg gggctggtga gttcaaattc cttaaatcca tggtccccaa cctaatggtt
     2521 caggaccctg ggagagaaat tgcggaaaat cttcattgca gggatagctt tgtattcagc
     2581 taa
//
