LOCUS       NM_001114601            2540 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus protocadherin beta 4 (Pcdhb4), mRNA.
ACCESSION   NM_001114601 NM_001014782 XM_001055111 XM_226004
VERSION     NM_001114601.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2540)
  AUTHORS   Wu,Q.
  TITLE     Comparative genomics and diversifying selection of the clustered
            vertebrate protocadherin genes
  JOURNAL   Genetics 169 (4), 2179-2188 (2005)
   PUBMED   15744052
REFERENCE   2  (bases 1 to 2540)
  AUTHORS   Zhang,T., Haws,P. and Wu,Q.
  TITLE     Multiple variable first exons: a mechanism for cell- and
            tissue-specific gene regulation
  JOURNAL   Genome Res 14 (1), 79-89 (2004)
   PUBMED   14672974
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On or before Feb 15, 2008 this sequence version replaced
            NM_001014782.1, XM_001055111.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643298.73639.1,
                                        SRR26360176.1472214.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2540              JAXUCZ010000018.1  29292290-29294829
FEATURES             Location/Qualifiers
     source          1..2540
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..2540
                     /gene="Pcdhb4"
                     /note="protocadherin beta 4"
                     /db_xref="GeneID:291655"
                     /db_xref="RGD:1308912"
     exon            1..2540
                     /gene="Pcdhb4"
                     /inference="alignment:Splign:2.1.0"
     CDS             182..2521
                     /gene="Pcdhb4"
                     /codon_start=1
                     /product="protocadherin beta 4"
                     /protein_id="NP_001108073.1"
                     /db_xref="GeneID:291655"
                     /db_xref="RGD:1308912"
                     /translation="METTIAKTSQQRQVVFLTMLLLLRVSGSEAIKYSMPEETESGYL
                     VANLAKDLGLRVGELATRGARIHHRGNKELLQLDAETGNLFLKEKLDREVLCGLTEPC
                     VLQFQIILKNPVQFFQTELQLTDINDHAPEFPDTEMLLTIPESVQPGTVFPLKAAQDS
                     DIGSNAVQNYTVSPNLHFHVVTHSRTDGRKYPELVLDRALDREEQPELTLILTALDGG
                     APRRSGMTAVHIEVVDINDNAPQFVQSLYEVQVPENIPLDALVVTVSATDLDAGIYGN
                     VAYSLFQGSRDSQPFIIDEITGEIRLSKELDFEVTPYYNVEIAAVDGGGLSGKCTVAV
                     QVLDVNDNAPELTISTFSSPVPENSPETVVLVFGVFDQDSGDNGRMVCSIQNELPFLL
                     KSTFENYYTLVTERPLDRESRAEYNITITVSDLGTPRLTTQHTITVKVSDINDNAPSF
                     TQTSYTMFVHENNSPALHIGTISATDSDSGSNAHITYSLLPPDDPQLDLDSLISINAD
                     NGQLFALRALDYEALQSFEFLVGATDEGSPALSSQALVHVVVLDDNDNVPFVLYPLQN
                     ASPPCTELLPRAAEPGYLVTKVVAVDQDSGQNAWLSFQLLKATEPGLFSVWAHNGEVR
                     TARLLSERDVPKHKLLLLVKDNGEPQRSASVTLHVLLVDGFSQPYLPLPEVALDPTYD
                     EDNLTLYLVVALASVSSLFLLSVLLFVGVRLCRRARASSLGGYSVPEGHLPSHLVNVS
                     GMGTLSQSYQYEVCLMGESGTTDFKFLKPSIPNSLIADN"
ORIGIN      
        1 agaacttaca ctgctcccac aaagaaggta gcattcactt tggatctaag gaagcgatct
       61 ccagagcctt agctccaaca ggaagccagt gagtaaaatt tagttctgct atttcatcga
      121 aacacgtgtg tggattctaa cactttaaaa gacactgtac tttctggatc cagtgtgaac
      181 aatggagaca acgatagcaa aaacgtcaca gcaaaggcaa gttgtttttc ttactatgtt
      241 gttgcttttg cgggtgtctg gttctgaggc aattaaatat tccatgccag aagaaacaga
      301 gagtggctac ttggtggcta acctagcaaa agatctgggg ctcagggttg gagaactggc
      361 cactagaggg gcacgaatcc atcacagagg aaacaaagag ctcttgcaac tggatgcaga
      421 gactgggaat ttgttcttga aggagaaact agaccgtgag gtgctgtgtg ggctgacaga
      481 accttgtgtg ctgcagttcc agatcatact gaaaaaccct gtgcagttct tccaaactga
      541 attgcagctc acagatataa acgaccatgc tccagagttc cctgacacag aaatgctcct
      601 aacaatccct gagagcgtcc agccagggac tgtgtttcct ctaaaggcag ctcaggactc
      661 tgatataggg agcaacgctg ttcagaacta cacagtcagt cccaacctcc atttccacgt
      721 cgttactcac agtcgcacag atggcaggaa atacccagag ctggtgctgg acagagccct
      781 ggatagggag gagcagcctg agctcacttt aatcctcact gctctggatg ggggtgctcc
      841 acgcaggtct ggtatgaccg cagttcatat tgaagtcgtg gacataaatg ataatgcccc
      901 ccagtttgta caatcgctct atgaggtgca ggttcctgag aatatccccc tcgatgcctt
      961 agttgtcaca gtctctgcca cggatttaga tgctgggata tatggcaatg tggcctattc
     1021 tctgtttcaa ggcagtagag attctcaacc atttataata gacgaaatca ccggagaaat
     1081 ccgtctgagc aaagagctgg atttcgaggt aactccatac tataatgtgg aaatcgcagc
     1141 ggtagatgga ggggggcttt caggaaaatg cactgtggct gtacaggtgt tggatgtgaa
     1201 tgataacgcc ccagagttga ccatttccac gttctcaagc cctgtccctg aaaactcccc
     1261 cgagactgta gtattggttt ttggggtttt tgaccaagat tctggggaca atggaaggat
     1321 ggtgtgttct attcagaatg aacttccatt tcttttaaag tccacattcg agaactatta
     1381 tactttagtg acagagaggc cactggacag agagagcaga gctgagtaca acatcaccat
     1441 cacggtctct gacctgggca cacccaggct cacaacccag cacaccataa cagtgaaggt
     1501 gtctgacatc aacgacaatg ccccctcttt cacccaaacc tcctacacca tgtttgtcca
     1561 cgagaacaat agtcctgccc tgcacatagg caccatcagt gccacagact cagactcagg
     1621 ctccaatgcc cacatcacct actctctgct gccgcctgat gacccgcagc tggacctcga
     1681 ctcactcatc tccatcaatg ctgacaacgg gcagctgttc gcgctcaggg cgctggacta
     1741 tgaggccctg cagtcctttg agttccttgt gggcgccaca gatgaaggct cgccagcgct
     1801 cagcagccag gcactggtgc acgtggtggt gctggacgac aatgacaatg tgcccttcgt
     1861 gctctacccg ctgcagaatg cctctccgcc ctgcacagag ctactgccca gggcagcaga
     1921 gcctggctat ctggtcacta aggtggtggc tgtggaccag gactctggcc agaatgcctg
     1981 gctgtcgttc cagctgctca aggccacaga gcctgggctg ttcagtgtgt gggcacacaa
     2041 tggcgaggtg cgcaccgcca ggcttctgag cgagcgcgac gtgcccaagc acaagttgct
     2101 gctactggtc aaggacaatg gagagcctca gcgctctgcc agtgtcactc tgcacgtgct
     2161 gctggtggat ggtttctctc agccttacct gcctctgcca gaggtggcgc tggaccctac
     2221 atacgatgaa gataatctca cgctgtatct tgtagtcgcc ttggcatctg tgtcttctct
     2281 cttcctcctg tctgtgttgc tgttcgtggg cgtgaggctg tgcaggcggg ccagggcttc
     2341 ctctctggga ggctactctg tgcctgaggg acacttaccc agccacctgg tgaatgtcag
     2401 cggtatgggg acgctgtccc agagctacca gtatgaggtg tgtctgatgg gggaatctgg
     2461 gaccacagat tttaagttcc tgaagcccag cattcctaac agtttgattg cagacaatta
     2521 attccatttt gaatagttaa
//
