LOCUS       NM_001014783            2555 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus protocadherin beta 3 (Pcdhb3), mRNA.
ACCESSION   NM_001014783 XM_226005
VERSION     NM_001014783.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2555)
  AUTHORS   Wu,Q.
  TITLE     Comparative genomics and diversifying selection of the clustered
            vertebrate protocadherin genes
  JOURNAL   Genetics 169 (4), 2179-2188 (2005)
   PUBMED   15744052
REFERENCE   2  (bases 1 to 2555)
  AUTHORS   Zhang,T., Haws,P. and Wu,Q.
  TITLE     Multiple variable first exons: a mechanism for cell- and
            tissue-specific gene regulation
  JOURNAL   Genome Res 14 (1), 79-89 (2004)
   PUBMED   14672974
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Feb 15, 2008 this sequence version replaced NM_001014783.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26360172.810175.1,
                                        SRR26643298.73638.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2555              JAXUCZ010000018.1  29285675-29288229
FEATURES             Location/Qualifiers
     source          1..2555
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..2555
                     /gene="Pcdhb3"
                     /note="protocadherin beta 3"
                     /db_xref="GeneID:291656"
                     /db_xref="RGD:1305171"
     exon            1..2555
                     /gene="Pcdhb3"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..2515
                     /gene="Pcdhb3"
                     /codon_start=1
                     /product="protocadherin beta-3"
                     /protein_id="NP_001014783.1"
                     /db_xref="GeneID:291656"
                     /db_xref="RGD:1305171"
                     /translation="MVAREERLLKQRQVLLLFVFLGGSLAGSASRRYSVAEETERGFA
                     IANLAKDLGLSGEELAERRAQAISKGNVQYFQLSHQTGDLLLVERLDREELCGSTEPC
                     VLHFQILLHNPLQFITNELEVIDVNDHAPEFFENAMQLKVLESSPPGTVIPLGNAVDL
                     DVGRNGLQNYTVSPKSHFHVHTRHRRDGRKYPELVLHRALDREEQPELSLTLTALDGG
                     SPPRSGTTQVHILVLDINDNAPEFTQSLYEVQILEKSPVGSVITTVSASDLDTGNFGA
                     ISYVFFHASEEILKTFQLNSSTGNIQLLKSLDYETINTYEVDIEAKDGGGLSGKCVVI
                     VQVVDVNDNPPELTLSSVNSLIPENSAETVVAVFSVSDLDSGDNGRVTCSIQDDLPFI
                     LKPSVENFYTIASEGALDRESRAEYNITITVSDLGTPRLTTQNTITVQVSDINDNAPD
                     FTQKSYTMFVRENNSPALHIGTISATDSDSGSNAHITYSLLPPDDPQLALDSLISINA
                     DNGQLFALRALDYEALQAFEFRVDATDRGSPALSSQALVRVMVLDENDNAPFVLYPLQ
                     NASAPCTELLPRAAEPGYLVTKMVAVDSDSGQNAWLSFQLLKATEPGLFSVWAHNGEV
                     RTTRLLSERDVPKHKLLLLVKDNGESPRSASVTLQVLLVDGFSQPYLPLPEVARDSLQ
                     NDVDLLTLYLVIALASVSSLFLLSVLLFVGVRLCRRVRAASMGGCSVSEGHFPGHLVD
                     VSQAGTLSQSYQYEVCLTGDSRTSEFKFLNPVIPNLFLEESERS"
ORIGIN      
        1 gatgtaaaac cacggttttt gtgaacctgg gtagattttt aagcaagaaa atctgaatct
       61 ctggaaaaca ttagttgtta agctgtctcc aaaagacttt gcttttcacg gagatatttc
      121 tcttggtgac aagcccttgg aaatacaacg cagaaataca atggtggcca gagaggaacg
      181 ccttcttaaa caaaggcaag tcttgcttct ctttgttttt ctgggtgggt ctcttgctgg
      241 gtccgcatcc aggcgctatt ctgtggctga ggaaacagag aggggcttcg caatagccaa
      301 tctagcgaag gatctggggc ttagtggaga agaactggct gaaaggagag ctcaagctat
      361 ctccaaaggg aacgtacagt attttcagct cagccatcag accggagatt tgctcttggt
      421 tgagagatta gaccgggagg agctgtgcgg ctcgaccgaa ccttgtgtgc tgcactttca
      481 gatattgctg cataatcctt tgcagtttat tacaaatgag ctcgaggtca tagatgtaaa
      541 tgaccatgcc ccggagttct ttgaaaatgc aatgcagctg aaagtcctag agagctcccc
      601 acctggaaca gtgattcctc tgggaaatgc tgtggacttg gatgtgggaa gaaatggact
      661 gcagaattac acggtctctc ccaagtccca ttttcatgtt catacccgcc atcgtagaga
      721 tggaaggaag tatccagaac tagttctaca cagagctctg gatcgggaag aacagccaga
      781 gctcagttta actctcacag ccctggatgg aggatcccca cctcggtctg gaactaccca
      841 ggtccacatc ctagtcttag acataaatga caatgcccca gaatttacac agtcactcta
      901 tgaggttcaa attttagaga aaagccctgt tggctctgtc attaccactg tctccgcttc
      961 tgacttagat acgggaaatt ttggtgcgat atcatacgta ttttttcatg cttctgaaga
     1021 aattctcaaa acttttcaac tgaactccag tactggtaat atacaactac ttaagagttt
     1081 ggattatgaa acaatcaata cttatgaggt tgacatagag gccaaggatg gtggaggcct
     1141 ttcagggaaa tgcgtagtca tagttcaggt agttgatgtg aacgataacc caccagaact
     1201 gacattgtca tcagttaaca gtcttattcc cgagaattca gcagagaccg tggtggctgt
     1261 tttcagtgtt tctgatttag actctggaga taacggaaga gtgacatgtt ccatccagga
     1321 cgatctcccc ttcatcctga aaccatctgt agagaacttc tatactatag cgtctgaagg
     1381 agctttggac agagagagca gagctgagta caacatcacc atcactgtct cagacctggg
     1441 cacacccagg ctcacaaccc agaacaccat aacagtgcag gtgtctgaca tcaatgacaa
     1501 cgcccccgac tttacccaaa agtcctacac catgtttgtc cgtgagaata acagccccgc
     1561 cctgcacata ggcaccatta gtgccacaga ctcagactca ggctccaacg cccacatcac
     1621 ttattcgctg ctgccgcctg atgacccgca actggccctc gactcgctca tctccatcaa
     1681 tgctgacaat gggcagctgt tcgctctcag ggcattagac tacgaagccc ttcaggcctt
     1741 cgagttccgc gtggacgcca cagacagagg ctcacccgcg ctcagcagcc aggctctggt
     1801 gcgcgtgatg gtgctggacg aaaatgacaa tgctcccttc gtgctctacc cactgcagaa
     1861 cgcctctgcg ccctgcacag agctgctgcc cagggcagcg gagcctggat acctggttac
     1921 caagatggtg gcggtggact ctgactctgg ccagaatgcc tggctgtcat tccagctgct
     1981 caaagccacg gagcccggac tgttcagcgt gtgggcgcac aatggtgagg tgcgcaccac
     2041 caggctgctg agcgagcgtg atgtgcccaa gcacaagctg ctgctactgg tcaaggacaa
     2101 tggagagtct ccgcggtctg ccagtgtcac tctgcaggtg ctgcttgtgg atggcttttc
     2161 tcaaccctac ctgcccttgc ctgaggtggc gcgcgactcc ctgcaaaacg atgtggattt
     2221 gctcacgttg tacttagtca ttgctttggc atctgtatct tctctcttcc tcctgtctgt
     2281 gctgctgttt gtgggggtga gactgtgcag gagggtcagg gcagcttcta tgggtggctg
     2341 ctctgtatct gagggacact ttcctggcca cctggtggat gtcagccaag cagggaccct
     2401 gtcccagagt taccagtatg aggtgtgtct gacaggagac tcaaggacca gtgagttcaa
     2461 attcctgaat ccagtgatac caaacctgtt tcttgaagaa tctgagagaa gttaagggaa
     2521 gtccccactg taggagtagt tttttagcta gctaa
//
