LOCUS       NM_001114604            2934 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus protocadherin beta 21 (Pcdhb21), mRNA.
ACCESSION   NM_001114604 NM_001014788 XM_001065486
VERSION     NM_001114604.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2934)
  AUTHORS   Wu,Q.
  TITLE     Comparative genomics and diversifying selection of the clustered
            vertebrate protocadherin genes
  JOURNAL   Genetics 169 (4), 2179-2188 (2005)
   PUBMED   15744052
REFERENCE   2  (bases 1 to 2934)
  AUTHORS   Zhang,T., Haws,P. and Wu,Q.
  TITLE     Multiple variable first exons: a mechanism for cell- and
            tissue-specific gene regulation
  JOURNAL   Genome Res 14 (1), 79-89 (2004)
   PUBMED   14672974
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Feb 17, 2023 this sequence version replaced NM_001114604.1.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643290.51243.1,
                                        SRR21887622.1638608.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2934              JAXUCZ010000018.1  29492219-29495152
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..2934
                     /gene="Pcdhb21"
                     /note="protocadherin beta 21"
                     /db_xref="GeneID:307487"
                     /db_xref="RGD:1305349"
     exon            1..2934
                     /gene="Pcdhb21"
                     /inference="alignment:Splign:2.1.0"
     CDS             185..2458
                     /gene="Pcdhb21"
                     /codon_start=1
                     /product="protocadherin beta-11 precursor"
                     /protein_id="NP_001108076.1"
                     /db_xref="GeneID:307487"
                     /db_xref="RGD:1305349"
                     /translation="MESVVGAAQHVRQVLVFFVFLEGSLVLSETWSYSVAEETETGSS
                     IGNIIKDMDVGDLAARGARVIFDDYQPYLRLELETGNLLLNKKLDREALCSTSEPCIL
                     HFQVLLENPLQFFQAELLIEDINDHTPTFLEKLIFLNISEGATPGTAFQMDNAQDLDI
                     GMNGILNYSISPNPYFYLKLKDSGKGRRYPELVLARSLDREKEASISLILIAIDGGSL
                     PRTGAVQVQVVVLDVNDNAPEFEKTLYEVQVPENSSVDSLVIKVSAKDLDSGINGEVS
                     YSFSHISRDVQKTFEIHPISGEIHLKTVLDFEVIPSYTINVQAIDGGGLSGKSAIIVQ
                     VTDVNDNPPEIVITSLMSPIQENSLSEMVVAIFSLRDQDSGENGRMICSIQDKLPFLL
                     KPTFKNFYTLVTEHPLDRESRAEYNITITVSDLGTPRLTTQHTITVQVADINDNAPAF
                     TQTSYTIFVQENNRPALHIGTITATDSDSGSNAHITYSLLPFHDPQLSLASLISVNAD
                     NGQLFALRALDYETLQTLEFHVGATDGGSPALSSQALVRVMVLDDNDNAPFILYPLQN
                     ASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSIWAHNGEVR
                     TTRMLSEHDVPKHKLLLLVKDNGEPPRSASVTLHLLVVDGFSQPYLPLPEVALDPTNV
                     DEEALTLSLVIALASVSSLFLLSVLLFVGVRLCRKATTASLGGYSVSEGHFPGHLVDF
                     SGAETLSQSYQYKVCLT"
ORIGIN      
        1 cagaagcaaa agcactggat aaaactgcac tcgggctctc gacaaaggtg gggcacccac
       61 aagaccctcc agaaaggatc acaaatctat aaaatcccaa aggtccagat gagcagagcc
      121 gctctctgag ctaccagaga ctgagtggaa acaacacagc agaaaccatt ttgtctaagg
      181 aataatggag tctgtggttg gagctgctca gcatgtaagg caagtgctgg ttttctttgt
      241 tttcctggaa gggtccttgg ttctttcgga gacctggagt tattctgtgg cagaagaaac
      301 ggagactggc tcctctatag gtaatatcat taaagatatg gatgtaggtg acctggctgc
      361 acggggggcc agagttatat ttgatgacta ccagccttat ttgcggttag aactggagac
      421 tggcaacttg cttttgaata aaaaactgga cagggaggca ctttgttcta ccagtgaacc
      481 ctgtatattg catttccagg tgttattgga gaatcctctg caattttttc aggctgagct
      541 tttgattgaa gacataaatg accatacccc cacatttcta gaaaaactca tatttctaaa
      601 tatctcagaa ggtgctactc caggaaccgc attccaaatg gataatgctc aagacttgga
      661 tataggaatg aatggtatcc taaactattc aataagccct aacccctatt tctaccttaa
      721 gttaaaagac agtggtaaag gaagaagata tccagagctg gtactggcta gatctctgga
      781 cagagaaaag gaggcttcaa ttagcttaat actaatagcc atagatggtg ggtctttgcc
      841 caggacaggg gctgtacagg ttcaagtcgt ggttctggac gtcaacgaca atgcccctga
      901 gtttgaaaaa accctgtatg aggtccaagt accagagaac agttccgtgg actcactagt
      961 aatcaaggtg tctgctaaag atttagattc aggaataaat ggagaggtat cttactcgtt
     1021 ttctcatatc tctagagatg tacaaaaaac attcgaaatc catccaatct ctggtgaaat
     1081 ccacttgaaa acagtcctag attttgaggt aattccgtct tatacaataa atgttcaagc
     1141 cattgatggt ggtggtctct ctggaaaatc agccattatt gttcaggtta cagacgtgaa
     1201 tgacaatcca ccagaaatag tcattacatc ccttatgagc cctatccaag agaacagttt
     1261 atcagagatg gtggttgcca ttttcagttt acgtgaccag gactctggtg aaaatgggag
     1321 aatgatttgt tcaattcaag acaaactccc ttttctattg aaacctactt tcaaaaattt
     1381 ctacactcta gtaacagagc atccactgga cagagagagc agagctgagt acaacatcac
     1441 catcactgtc tctgacctgg gcacacccag gctcacaacc cagcacacca taacagtgca
     1501 ggtggcagac atcaacgaca acgcccccgc cttcacccag acctcctaca ccatatttgt
     1561 ccaagagaac aatagaccag ccctacatat aggcaccatc actgccacag actcagactc
     1621 aggctccaat gcccacatca cttactcgct gctgccattc cacgacccac agctgtcgct
     1681 cgcctcgctc atctccgtta acgcagacaa tgggcagttg ttcgccctca gggcactgga
     1741 ctatgagacc ctacagacct tagagttcca tgtgggtgcc acagacggag gctcgcccgc
     1801 actcagcagc caggctctgg tgcgtgtgat ggtgttggat gataatgaca atgcgccctt
     1861 catactctac ccgctgcaga acgcctcagc accctgcact gagctgctgc ctagagcagc
     1921 agagcctgga tacctggtca ccaaggtggt ggctgtggat cgtgactctg gccagaatgc
     1981 ctggctgtct tttcagctgc tcaaagccac ggagcccggg ctgttcagca tatgggcaca
     2041 caatggtgag gtgcgcacca ccaggatgct gagtgagcac gatgtgccca agcacaaact
     2101 gctgctactg gtcaaggaca atggagagcc tccgcgttct gccagtgtca cgctgcacct
     2161 gttggtagtg gatggcttct ctcagcccta cctgcctctg ccagaggtgg cgctcgaccc
     2221 tacaaacgtg gatgaggaag cgctcacact ctccttggtc attgccttgg catctgtgtc
     2281 ttctctcttc cttttgtctg tgctgctgtt cgtgggggtg aggctgtgca ggaaggccac
     2341 gacagcctct ctgggtggct actctgtgtc tgagggacac tttcctggcc acctggtgga
     2401 cttcagcggt gcagagaccc tgtcccagag ctaccagtac aaggtgtgtc tgacatgagt
     2461 acaggattcc aaagataatc ggttcctaaa gcctgtctcc caaccttgag tgggctgtga
     2521 attgcataaa agaaaattcc tcctctatga atggtttggg atgcaattag caatttgttg
     2581 actcgccaca gttcctgatg aacattggtt ctttctaaac attcttcttt tctattgttt
     2641 tctcttcatc aggaacttgt aacattttgc ctttattttc ctaattcagg agatgattac
     2701 tttcatgtat atacttacag gttggtctct ttttaaaaaa atcgtttcct aatgaagaca
     2761 gagaatttta ctcactactg acaagtcaca gtttcatcaa tttgttaaat tctcaaaatt
     2821 aatcattatt gatttgaaaa tcctcacttt cattctattt gattgttgtc cagaaaaaaa
     2881 tgaaagcatt gatgttttga agataaatgt gataaagtta atgagttaac agtg
//
