LOCUS       NM_001109123            2787 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus protocadherin beta 2 (Pcdhb2), mRNA.
ACCESSION   NM_001109123 XM_001064373 XM_574128
VERSION     NM_001109123.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2787)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Sep 5, 2018 this sequence version replaced NM_001109123.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643298.73637.1,
                                        SRR26360190.2040551.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2787              JAXUCZ010000018.1  29280004-29282790
FEATURES             Location/Qualifiers
     source          1..2787
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..2787
                     /gene="Pcdhb2"
                     /gene_synonym="RGD1563132"
                     /note="protocadherin beta 2"
                     /db_xref="GeneID:498843"
                     /db_xref="RGD:1563132"
     exon            1..2787
                     /gene="Pcdhb2"
                     /gene_synonym="RGD1563132"
                     /inference="alignment:Splign:2.1.0"
     CDS             163..2544
                     /gene="Pcdhb2"
                     /gene_synonym="RGD1563132"
                     /codon_start=1
                     /product="protocadherin beta-2 precursor"
                     /protein_id="NP_001102593.2"
                     /db_xref="GeneID:498843"
                     /db_xref="RGD:1563132"
                     /translation="MEQILKKRQVLLFFVLLGIAQAGSTIRRYSVEEEAENGFFVANL
                     LKDLGLEVEELAERGPRVISKGKKLNLEFNRQTGDLLLREKLDREELCGPAEPCVVPF
                     QVLLGNPLEIFQAELQIRDINDHSPVFLDKKIILKISEITAPGTTFLIERAQDLDVGS
                     NSLQTYSISPNFHFHLNLQDSPDGTVLPQLVLDKVLDREERSEIRLILTALDGGNPPR
                     SGTVHILIEVLDINDNAPAFSKLRYEVQVPENSPVGSQVATVSAKDLDIGDNGQITYA
                     FSQASEDIRKTFRMNATSGEILLVKTLDFESIQAYTVYVQATDGGGLSGSSVVFVQVK
                     DLNDNPPELTMSTFTNHIPENAPETVIAVFSVADPDSGDNGKMVCSIQEDLPFVLKPS
                     VENLYTLMTNTALDRETRTQYNITITVSDMGTPRLTTQHTIAVYVSDINDNAPAFTQT
                     SYTIFVRENNSPALHIGTISATDSDSGSNAHITYSLLPPQDPQLALNSLISINADNGQ
                     LFALRALDYEALQAFEFHVSAVDGGLPALSSQAPVRLVVLDDNDNAPFVLYPLQNASA
                     PCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTR
                     LLGERDVLKHRLLLLVKDNGDPPRSASVTLHVLLVDGFSQPYLPLPEVARDAAQDENA
                     LTLYLVIALASVSSLFLLSLLLFVGVRLCRRDRATSLGGCSMPEGHFPGHLVDVGGAG
                     TLSQSYQYEVCLSGDTRTPDFKFLKPIIPNFLLQNSERENDTNPSYRNSFEFS"
ORIGIN      
        1 ggggagagga agccttctaa ggcattcttt ccggaaagtc ttaggtctgg gaattgtgga
       61 cgtgtaccag tgtctgcaag atatttgcag agcgagtcag tgataacgta aaccacgatt
      121 ggagcgagtt tgttgagaga gcagaaagag gctggagagg aaatggagca aatcctgaaa
      181 aaaaggcaag tcctgctgtt ctttgttttg ctgggcatag ctcaggctgg gtccacaatt
      241 aggcgctatt cggtggagga ggaagcagag aacggttttt ttgtggcaaa tttgttgaag
      301 gacctggggc tggaggtaga ggaactcgct gagcggggac cgcgagtaat ttccaaaggg
      361 aaaaaattga acttagaatt caataggcaa acaggagatt tgttgttaag ggagaaattg
      421 gaccgggagg agctgtgcgg tcctgctgaa ccctgtgtgg tgcctttcca ggtgttactg
      481 ggaaatcctt tggagatttt tcaggctgaa ctacagatta gggacataaa tgaccattct
      541 cccgtttttc tggacaaaaa aataattttg aaaatttcag aaattactgc tcccggtacc
      601 actttcctaa tagaacgtgc tcaagactta gatgtaggaa gcaacagtct ccaaacttac
      661 tcaatcagcc ccaatttcca ttttcatctt aatctacaag acagtcctga tggcacagta
      721 ttaccacagc tggttctgga caaagtgttg gatcgggagg aacggtctga aatcagatta
      781 atactgacag ctctagatgg ggggaatcca cccaggtctg gtactgtcca tatccttatt
      841 gaagtcttag acatcaatga caatgccccc gcgttttcaa agcttcgcta tgaggttcag
      901 gtcccagaga acagtcctgt tggatcccag gttgccactg tctctgctaa ggatttagac
      961 attggagaca acggacaaat aacttatgcc ttttcccaag cctctgaaga cattcggaaa
     1021 acgtttcgaa tgaatgcaac atccggagaa atccttttag taaagaccct ggattttgaa
     1081 tccatccagg catacacagt atatgttcag gccacagatg gtgggggact ttctggaagc
     1141 agtgtggtgt ttgttcaagt aaaggatttg aatgacaacc ctccagaact gactatgtcc
     1201 acatttacca accacatccc ggaaaatgcc ccggaaactg taattgctgt gttcagtgtt
     1261 gcagatcccg actctggaga caatggaaaa atggtttgct ccatccaaga agatcttcct
     1321 tttgttctaa aaccctcagt tgagaacttg tacactctta tgacaaacac agccctggat
     1381 cgagagacca gaacacagta caacatcacc atcactgtct cagacatggg tacacccagg
     1441 ctaacaactc agcacaccat agcagtgtac gtgtctgaca tcaatgacaa cgcccccgcc
     1501 ttcacccaaa cctcttacac catatttgta cgagaaaaca acagccccgc cctgcacata
     1561 ggcaccatca gtgccacaga ctcagactcg ggctccaatg cccacatcac ctactctctg
     1621 ttacctcccc aagaccctca gctggctctc aactcgctca tctccattaa tgcagacaat
     1681 gggcagttgt tcgcgctcag ggcgctggac tatgaggcac tgcaggcctt cgagttccat
     1741 gtgagcgccg tagatggagg cttgccagcg ctcagcagcc aggctccggt tcgcctggtg
     1801 gtgctggacg acaatgacaa tgctcccttc gtgctctacc cgcttcagaa cgcctctgca
     1861 ccctgcaccg agctcctccc cagggcggca gagccaggat acctggtcac caaggtggtg
     1921 gcagtggacc gcgactctgg ccagaatgcc tggctgtcat tccagttgct caaagccacg
     1981 gaacccgggc tattcagcgt gtgggcacac aatggggagg tgcgcaccac caggctgctg
     2041 ggcgagcgcg atgtactcaa gcacaggctg ctgctcctgg ttaaagacaa tggcgatcct
     2101 ccgcgctctg ccagtgtcac tctgcatgta ctgctggtgg atggtttctc acaaccctac
     2161 ctacctctgc cagaagtggc gcgcgacgct gcacaagacg agaacgcgct aacactctat
     2221 ctggtcattg ccttggcctc tgtgtcttct ctcttcctcc tgtctctact gctgttcgtg
     2281 ggggtaaggc tgtgcaggag agacagagcg acctcgctgg gtggctgctc tatgcccgaa
     2341 ggtcactttc ctggccacct agtggatgtt ggcggcgcag ggactctgtc ccagagctac
     2401 caatatgaag tatgcctgtc tggagacact aggaccccag atttcaagtt cctgaaacca
     2461 attatcccaa atttccttct tcagaattca gagagagaga atgatacaaa ccctagttac
     2521 aggaatagtt ttgaattcag ttaaatattg gtgaagaaat acttagtcta gtctcagcta
     2581 agacctgaaa ggcttgagtg tactgctttg agaactggag gtgtctcttt tttgaaagta
     2641 actatcttac tccaaccctt tgcatgttct tggtatttct tacaaggtaa ggtatgagga
     2701 agaaggagtc taaattttgc ttgtattcca attttagtct tttaatttta attgacttat
     2761 aatgtgaaag tgaaaattgt attttca
//
