LOCUS       NM_001404916            3410 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus protocadherin beta 16 (Pcdhb16), mRNA.
ACCESSION   NM_001404916 XM_017601099
VERSION     NM_001404916.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3410)
  AUTHORS   Junghans,D., Heidenreich,M., Hack,I., Taylor,V., Frotscher,M. and
            Kemler,R.
  TITLE     Postsynaptic and differential localization to neuronal subtypes of
            protocadherin beta16 in the mammalian central nervous system
  JOURNAL   Eur J Neurosci 27 (3), 559-571 (2008)
   PUBMED   18279309
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Apr 15, 2022 this sequence version replaced XM_017601099.2.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26360194.203735.1,
                                        SRR26360186.917152.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3410              JAXUCZ010000018.1  29466270-29469679
FEATURES             Location/Qualifiers
     source          1..3410
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..3410
                     /gene="Pcdhb16"
                     /gene_synonym="Pcdhb16l; Pchdb16"
                     /note="protocadherin beta 16"
                     /db_xref="GeneID:108348771"
                     /db_xref="RGD:11492646"
     exon            1..3410
                     /gene="Pcdhb16"
                     /gene_synonym="Pcdhb16l; Pchdb16"
                     /inference="alignment:Splign:2.1.0"
     CDS             272..2671
                     /gene="Pcdhb16"
                     /gene_synonym="Pcdhb16l; Pchdb16"
                     /note="protocadherin beta-13-like; protocadherin
                     beta-16-like"
                     /codon_start=1
                     /product="protocadherin beta-16 precursor"
                     /protein_id="NP_001391845.1"
                     /db_xref="GeneID:108348771"
                     /db_xref="RGD:11492646"
                     /translation="MEAAWMRNLRQRQVLAFFVLLSVSGAGAELGPYFIEEETERGSF
                     VANLGKDLGVELAEISSRRARIISQENKEHLQLNVQSGDLLINERLDREELCGPIEPC
                     VLHFQVLMENPLEIFQAELRVTDINDYSPVFSEREMILRIPENSARGNTFPLNNALDS
                     DVDINNIQTYRLSSNSHFLVVTRNRSDGRKYPELVLEKELDREEEPELRLTLTALDGG
                     SPPRSGTTQVLIEVVDTNDNAPEFQQPTYQVQTPENSPTGSLVLTVSANDLDSGDYGK
                     VLYALSQPSEDISKTFEVNPVTGEIRLRKEVNFETIPSYEVVIKATDGGGLSGKCTLL
                     LQVVDVNDNAPEVMLSALTNPVPENSPDEVVAVFSVRDPDSGNNGKVIASIEEDLPFL
                     LKSSGKNFYTLVTKGALDREEREQLNITITVTDLGIPRLTTQHTITVQVADINDNAPS
                     FTQTSYTMFVRENNSPALHIGTISATDSDSGSNAHITYSLLPPQDPQLALDSLISINV
                     DNGQLFALRALDYEALQGFEFHVGATDQGSPALSSQALVHVVVLDDNDNAPFVLYPLQ
                     NASAPFTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFNVWAHNGEV
                     RTSRLLSERDAPKHKLLLLVKDNGDPPRSASVTLHVLVVDAFSQPYLPLPEVAHDPAQ
                     EEDALTLYLVIALASVSSLFLLSVLLFVGVRLCRRARAASLSAYSVPQGHFPGQLVDV
                     RGMGTLSQSYQYDVCLMGDSSGTSEFNFLKPVLPSSLHQCSGKEIEGNSTLQNSFGFH
                     H"
ORIGIN      
        1 taaaatctga aaatgtaagg ctccatgaga ccgcacggtg gcgctgcagg ttaagaagac
       61 agggcataga aattgcttct gtaattcccc tgtcggggcc agtttctcac cgcctagaag
      121 caaaaggtgt gcctttttca gccaaagcac aggcgagtgt gaaaccttaa atattctatt
      181 gggaggcttg attgtgacgt tctggactgt gagatagtgc tgccaggatc ctgggcattt
      241 gcgaagctac tgcgaagctg aggaaagagc catggaggct gcatggatgc gcaatctgag
      301 acaaaggcaa gtcctggctt tctttgtttt gctgagtgtg tctggggcag gggcagaact
      361 gggtccctat ttcatagagg aagaaacaga gaggggctcc tttgtggcaa atcttgggaa
      421 agatctgggg gtggagctgg cagagatatc cagccggagg gctcggatca tttcccagga
      481 aaacaaagag catttgcagc tcaacgttca atctggagat ttgctcataa atgagagact
      541 ggaccgagag gagctgtgtg gccccattga gccttgtgtt ctgcatttcc aagtgttaat
      601 ggaaaaccct ttagagatat ttcaggctga actgagggtg acggacataa acgactattc
      661 tccagtgttc agtgaaagag aaatgatact gaggatacca gaaaacagtg ctcggggaaa
      721 tacattccct ttaaacaatg ctctggactc agacgtagat atcaacaata tccagaccta
      781 taggctcagc tcaaactctc atttcctggt tgtaacccgc aaccgcagtg atggcaggaa
      841 gtacccagag ctggtgctgg agaaagaact ggatcgagag gaggaacctg agctgaggtt
      901 aacgctgaca gctttggatg gtggctctcc tccccggtct gggacgacac aggtcctcat
      961 tgaagtagtg gacaccaacg ataatgcacc cgagtttcag cagccaacat accaagtgca
     1021 aactcccgag aacagtccaa ccggctctct ggtactcaca gtctcagcca atgacttaga
     1081 cagtggagac tatgggaaag tcttgtacgc actttcgcaa ccctcagaag atattagcaa
     1141 aacattcgag gtaaaccctg taaccgggga aattcgccta cgaaaagagg tgaattttga
     1201 aactattcct tcgtatgaag tggttatcaa ggccacggac gggggaggtc tctcaggaaa
     1261 atgcactctg ttactgcagg tggtggacgt gaatgacaat gccccagaag tgatgctatc
     1321 tgcgctaacc aacccagtcc cagaaaattc ccccgatgag gtagtggctg ttttcagtgt
     1381 tagagatcct gactctggga acaacggaaa agtgattgca tccatcgagg aagacctgcc
     1441 ctttcttcta aaatcttcag gaaagaactt ttacacttta gtaaccaagg gagcacttga
     1501 cagggaagaa agagagcaat tgaacatcac catcacagtc actgacctgg gcatacccag
     1561 gctcaccacc caacacacca taacagtgca ggtggcagac atcaacgaca atgccccctc
     1621 cttcacccaa acctcctaca ccatgtttgt ccgcgagaac aacagccccg ccctgcacat
     1681 aggcaccatc agcgccacag actcagactc aggatccaat gcccacatca cctactcgct
     1741 gctaccgccc caagacccac agctggccct cgactccctc atctccatca atgtagacaa
     1801 cgggcagctg ttcgcgctca gggcgctaga ctatgaggct ctgcagggct tcgagttcca
     1861 tgtgggcgcc acagaccaag gctcgcccgc gctcagcagc caggctctgg tgcacgtggt
     1921 ggtgttggac gacaatgaca atgcgccctt cgtgctctac ccgctgcaaa acgcctctgc
     1981 acccttcact gagctgctgc ccagggcggc agagcctgga tacctggtta ccaaggtggt
     2041 agctgtggac cgcgactctg gccagaatgc ctggctgtca ttccagctgc tcaaggccac
     2101 ggagcccggg ctgttcaacg tatgggcgca caatggcgag gtacgcacct ccaggctgct
     2161 gagcgagcgc gacgcaccca agcacaagct gctgctgttg gtcaaggaca atggagatcc
     2221 tccacgctct gccagtgtta ctctgcacgt gctagtggtg gatgccttct ctcagcccta
     2281 cctgcctctg ccagaggtgg cgcacgaccc tgcacaagaa gaagatgcgc taacactcta
     2341 cctggtcata gctttggcat ctgtgtcttc tctcttcctc ttgtctgtgc tgctgttcgt
     2401 gggggtgagg ctctgcagga gggccagggc agcctctctg agtgcctatt ctgtgcctca
     2461 aggccacttt cctggccagc tggtggatgt cagaggtatg gggaccctgt cccagagcta
     2521 ccagtatgat gtatgtctga tgggggattc ttctgggacc agcgaattta acttcttaaa
     2581 gccagttctg cctagctctc tgcaccagtg ctctgggaaa gaaatagagg gaaattccac
     2641 actccagaat agttttgggt ttcatcatta atagaaaact actttacaga tatttaattc
     2701 caaatatcat cttgttgatt aactaaagtc tgttcacatg tagctagcta gcaacgattt
     2761 taatgttcac tttacccatc ttttttcagg gtcatgtcta aagctacaag tttggcttta
     2821 cttatacttg tcgcacagaa ttttccatga ggtctcagaa aacaaaaagg gtttatcagc
     2881 agtttatgtg ttcactaaaa cttttctacc actttgtttt tcttcctcat tatctctccc
     2941 tgttttatgt aagtgttctg tttgtagact tcttgaatta ctaaaatgct gtattgtgca
     3001 ttatttacat atataatagt tggtatttct gtatttcctt tctatactga cagtctcatt
     3061 gaattgccac ttttgatttt attatatata attgttgtct taagctatgc taatatttta
     3121 cagttttgtt tccttgttta tatatcttga tttaaaaatc tatttctgtc ataagtaata
     3181 caagtatcta gttaacctaa aaataagagt agtattgtaa gatattgaga tcgtgtagat
     3241 gtgtcttaat ttttgagaat caaggcaatt ttggcattct aaggcatcaa atagaagttt
     3301 ttcaattttt cttttaattc ttcgtgaaaa ctaggaggta ggcattaaac ttttgacgtc
     3361 ttacaatcca gccacagtct tttgaataaa cagtgtatat ttatcttcaa
//
