LOCUS       XM_001055818            4979 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protocadherin beta 15 (Pcdhb15), mRNA.
ACCESSION   XM_001055818
VERSION     XM_001055818.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001055818.8.
            
            On Jan 21, 2021 this sequence version replaced XM_001055818.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4979
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4979
                     /gene="Pcdhb15"
                     /note="protocadherin beta 15; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5 long
                     SRA reads, 79 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108348201"
                     /db_xref="RGD:11368541"
     CDS             2320..4722
                     /gene="Pcdhb15"
                     /codon_start=1
                     /product="protocadherin beta-7"
                     /protein_id="XP_001055818.2"
                     /db_xref="GeneID:108348201"
                     /db_xref="RGD:11368541"
                     /translation="MEGILGFILKVLERMESRLEQAVKKRQVLFLYVFLGASWASAEQ
                     LQYSVAEETERGTFLANLAKDLGLGLGELSAREARIVSDQNTRFLLLSPLTGELILNE
                     KLDREELCGPTEPCVLTFQLLLERPFQIYRAALHVKDINDNSPVFLDKEIHLKISEST
                     TPGATFFLERAQDSDVGTNSLSNYTISPNDYFHIHVNDGGEGTIFPELVLDKMLDREE
                     IPEFTLTLTALDGGSPPRSGTALVRILVLDINDNSPQFVQSLYKVQSPEDTPVGSLVV
                     AVSARDLDTGSNGQITYTFSYATERILQTFQINSTSGNLYLKRELNYEAIQTYSITIQ
                     ARDGGGLSGKCTVVVEVMDVNDNPPEFLLSSLNSPIPENSPEAVVAVFRIRDRDSGNN
                     GKTMCSVAHDLPFVLKPSVENFYTLVTEKPLDREAYTEYNITITVSDLGTPRLTTQHT
                     ITVQVSDINDNAPTFTQTSYTMFVRENNSPALHIGTISATDSDSGSNAHITYSLLPPH
                     DPQLALDSLISINADNGQLFAIRALDFEDLQAFEFHVGAEDQGSPALSSQALVRVVVL
                     DDNDNAPFVLYPLQNASTPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKAT
                     EPGLFSVWSHNGEVRTTRMLGERDVPKHKLLLVVKDNGEPPRSASVTLHVLLVDGFSQ
                     PYLPLPEMAHDPAQEEDALTLYLVIALASVSSLFLVSVLLFIGVRICRRARAASLGVC
                     FVPEEHFPGHVVDVSGAGTLSHNYQYEVSLTGGSAITSEFKFLNSIAPNYLTESTGRE
                     ID"
ORIGIN      
        1 gagagagaga gagagagatc atctatccat gtgcacaagt gcatataaat acaaacacca
       61 catgcactca aaaataaatt ttcaaagatt gtaacaaaac ttacctttca taatcctttt
      121 ctagaaactg cagtatgatg cctatgaaac aaaaaaagca acccagacag gaaaaaaaaa
      181 caaaaaaggg aacatagaaa ataggggaaa tgtgaaacaa atatctgtgt gatgacttca
      241 ggatgacaac cgtgtctcga gtagagcaaa caacagggct ctagtctgaa tctttgtgac
      301 aagagggatt ggcatactgc agaatactta cccgtgagtc ccatgacact gcatcatctt
      361 ttcagtcatt tcttaaagcc aatgagtaaa cagaaaaaca gaaagtacaa aaatattcta
      421 caacttggaa atttaactag aataaaagtc agagaatccc atagatggca ataatgagaa
      481 gttccaagat gacagtcatg tgacagttgt gtgacagcca tgtgacagcc atgtgacagc
      541 agagccatgt gacagccaag ccatgtgaca gcagagccat gtgacagcag agccatgtga
      601 cagctgatgt agaaaccaac catgccattg aaaggggaac tagtatcttg aaagacacag
      661 taatgtgtgg aattgtattg ggaggtaact ggaatcatga aaagatatgg ataactatta
      721 ttgataaaga aaatgaaaaa gcaaggcaat tattaatgtc aaaaatgagg gtgggaagca
      781 taattattac acaacaattt tcctaacaca ttgcaaatga aaagagacat aaaggacttc
      841 aaatataacc ctgcttacag aggacccagt tgataatgtc tgaggctgac atattttaaa
      901 agtcagtgac agagacagta actaagaaac agagaaggtg agaggaaggc aggctcactg
      961 tattttatgt cttttggtgt tcacgggttt gttgttgttg tattgagatg aaggttacat
     1021 tttatttggg aagagcacag atgttaaaac tgtcaataac ctgcagttct tacaagcctc
     1081 attccaagca ggaggtagat agaaaaggag acatcactga caataatagg aaaacataaa
     1141 taatgcaaaa aatttggaaa gtagaaaata gctttcatta aataaaaggt tcttaaagaa
     1201 ttctgagcag acttatagtc caggacagaa tggacaagat gaagatctac aactaatgaa
     1261 agcaccagat ttgggaaatc taaaaggaaa attaagcatg tagaagaaaa caatatactc
     1321 catctgtcct gttctttaaa agaagatgga aggcttcctc tccatcctat gaggctatga
     1381 tggcaaccaa ctatgcaaac catttaagtt aaacataaac ataaagagaa acctaaaagc
     1441 agattgacat attaagtcta cttgtgcatc gaaattaatc catcatggat aagtttaatt
     1501 tatattaaag actcaagaat taataagcta aataactcgt ggatgattta aacaaatgtt
     1561 taaaaaaaca tttttgtaaa ataaaagaaa gcattcttga tgggaaaaaa gaaagcattc
     1621 ttgatggaaa aaaccataaa gatgaaatat agaagcacat ccacaaatac aagtctgacc
     1681 tacttttact ggcaatacta gagcattcac tgggtattag agatcttggc cattaatacc
     1741 aatatatagt acttagggct gcttaagtgt gaaaattatg gagcatgaag tcttatagaa
     1801 gagtgaagac ttttaaagtg gaagaattgt ccattcacaa gaaactgaag aaaaaaacct
     1861 agttttgtat tattattgtt tagtgactta gaaataacac aatatttgac tttttggtgg
     1921 aggcttgatt ctcttttata gtctttacta tcaacttttg aagcaagagg ttttcagatt
     1981 gtcttaaatt ttagtaggga atccgagtta aatgtaaacc cttgtgcgga atgcttttaa
     2041 tccaagataa aaggtctgtt ctattcttga gaaagaatag cactcgcaaa acgcaaggtg
     2101 gcgctgcagg ctaaagagag gaaagggaag gaacggggag gggaagggat gcacaaagga
     2161 tattccagac ttccgacaaa gccataggaa atgatatagc tagctagcgg tagcaagccc
     2221 ggggagaagg cacctctctc ttttcacagg aattgctagt gtccaagtca ttcctaagga
     2281 ttccagctgc aggcattcca gggagctgtt tgaggccaaa tggaaggaat tttgggtttt
     2341 attttgaaag tcttggaaag aatggagtcc agattggagc aagctgtgaa gaaaaggcaa
     2401 gtgctgtttc tttatgtatt tcttggagcg tcctgggcta gcgccgaaca gcttcagtac
     2461 tctgtggcag aggaaactga gagaggcact ttcttagcca atctagcaaa ggatttgggg
     2521 ttggggctgg gggaactgtc agcccgggaa gctagaattg tttcagacca gaacacacgg
     2581 tttttactgc tcagtcctct tactggagag ctaattctta atgagaagct ggaccgagag
     2641 gaactgtgtg gccccacaga gccctgtgtg ctgactttcc aattgctgtt ggaaagacca
     2701 tttcagattt atcgtgctgc attacatgtc aaagatataa atgataattc tccagtattt
     2761 ctagacaaag aaatacactt gaaaatatca gaaagtacca cgccaggggc gacgtttttc
     2821 ttagagaggg cacaggattc cgatgtggga acgaacagcc tgagtaacta caccataagc
     2881 cccaatgatt atttccacat tcacgtgaat gatggcgggg aggggactat ctttcctgaa
     2941 ctggtactgg ataaaatgct ggaccgagaa gaaataccag aattcacttt aactctcaca
     3001 gccttggatg gtggctctcc acctagatct gggacagcct tggtgcgaat cttggtgttg
     3061 gacataaatg acaactcccc tcaatttgtg cagtcacttt acaaagttca gtcacctgaa
     3121 gacaccccgg ttggctcctt ggttgtcgct gtgtctgcta gggacttaga cacaggaagt
     3181 aatggtcaaa taacctacac attttcttat gccactgaaa gaattctcca aacgtttcaa
     3241 atcaattcta catctggcaa tctttatctt aaacgcgaac tcaattacga ggcaattcaa
     3301 acttattcga taactattca ggccagagat ggtggtggac tttctgggaa atgtactgtg
     3361 gttgtagagg taatggacgt aaatgataac ccacctgagt ttctcttgtc gtcacttaat
     3421 agcccaattc ctgaaaattc accagaggcg gttgttgctg tttttagaat tagagacaga
     3481 gattcaggga acaatgggaa aaccatgtgc tccgttgcac atgatctccc tttcgtcctg
     3541 aagccatctg tggagaattt ctatactctg gtaacagaaa agcctttaga tagagaagcc
     3601 tacactgaat acaacatcac catcacagtc tccgacctgg gcacacccag gctcacaacc
     3661 cagcacacca taacagtgca ggtttctgac atcaacgaca acgcccccac ctttacccaa
     3721 acctcctaca ccatgtttgt cagagaaaac aacagccccg ccctgcacat aggcaccatc
     3781 agcgccacag actcagactc aggctccaat gcccacatca cctactcact gctgccgccc
     3841 cacgacccgc agctggccct cgactcgctc atctccatca atgctgacaa cgggcagctg
     3901 tttgctatta gggcgctaga ctttgaggac ctacaagcct ttgagttcca cgtgggcgca
     3961 gaagaccaag gctctcccgc gctcagcagc caggctctgg tgcgtgtagt ggtgctggac
     4021 gacaatgaca atgcgccctt cgtgctctac ccactgcaga acgcctctac accctgcaca
     4081 gagctgttgc ccagggcagc agagcctgga tacctggtca ccaaggtggt ggcagttgac
     4141 cgagattctg gccagaatgc ctggctgtcg ttccaattgc ttaaggctac ggaacccggg
     4201 ttgtttagtg tgtggtcgca caatggcgag gtgcgcacca ccaggatgct aggcgagcgc
     4261 gatgtgccca agcacaagct gctgctggta gtcaaggaca atggagaacc tccacgctct
     4321 gccagtgtca ccctgcatgt gttgctggtg gatggcttct ctcagcccta cctgcctctg
     4381 ccagagatgg cgcacgaccc tgcacaagaa gaagatgcgc tgacactcta cctggtcatt
     4441 gccttggcgt ctgtgtcttc tctcttcctg gtgtctgtgc tgctgttcat tggagtgaga
     4501 atctgcagga gggccagggc ggcctctcta ggtgtctgct ttgtgcctga ggaacacttt
     4561 cctggccacg tggtggatgt cagcggtgca ggaaccctgt cccacaacta ccagtatgag
     4621 gtgtctctta ctggagggtc agcgataacc agtgaattta agttcctaaa ttcaattgcc
     4681 cctaactatc taactgaaag cacagggaga gaaatagatt aaaaactata cccttctgcc
     4741 catagatgaa gttctaattt aaactatgcc cttgttgtgt aaagaatgat gtaatgttaa
     4801 catctaacat cttgaagtta actaatttag gacaaaaaaa gaataccatt attattctca
     4861 agaacctttt ctttaaagta tgaaatgcat gtgttgtgtg atatatccaa tttaatttaa
     4921 tttctctttg tttttttaag tatttgttga attgcaatct attaaacaac aaatcttgg
//
