LOCUS       NM_001014800            2912 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus protocadherin beta 1 (Pcdhb1), mRNA.
ACCESSION   NM_001014800 XM_001054930 XM_344666
VERSION     NM_001014800.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2912)
  AUTHORS   Wu,Q.
  TITLE     Comparative genomics and diversifying selection of the clustered
            vertebrate protocadherin genes
  JOURNAL   Genetics 169 (4), 2179-2188 (2005)
   PUBMED   15744052
REFERENCE   2  (bases 1 to 2912)
  AUTHORS   Zhang,T., Haws,P. and Wu,Q.
  TITLE     Multiple variable first exons: a mechanism for cell- and
            tissue-specific gene regulation
  JOURNAL   Genome Res 14 (1), 79-89 (2004)
   PUBMED   14672974
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On or before Jan 26, 2022 this sequence version replaced
            XM_001054930.6, NM_001014800.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR22582416.1238265.1,
                                        SRR26360190.825600.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2912              JAXUCZ010000018.1  29187848-29190759
FEATURES             Location/Qualifiers
     source          1..2912
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..2912
                     /gene="Pcdhb1"
                     /note="protocadherin beta 1"
                     /db_xref="GeneID:364841"
                     /db_xref="RGD:1308760"
     exon            1..2912
                     /gene="Pcdhb1"
                     /inference="alignment:Splign:2.1.0"
     CDS             155..2611
                     /gene="Pcdhb1"
                     /codon_start=1
                     /product="protocadherin beta-1 precursor"
                     /protein_id="NP_001014800.1"
                     /db_xref="GeneID:364841"
                     /db_xref="RGD:1308760"
                     /translation="MAAARRKPLQNRQVGSLLLLWCVSVGGAATIRYSVAEEMESGSF
                     VANVAKDLGLEVGKLAERGARLVAEGNRLHFRLHRKTGDLFVKEKLDREALCGKADPC
                     VLHFEIILAEPLQSFRVEVRVFDINDNAPVFLNKEPLLKIPESTPLGSRFPLQSAQDL
                     DVGLNGLQNYTLSANTYFHLHTRFRSHGPKYAELVLDNPLDREAQPEVNLTITAVDGG
                     SPPKSGTANIRVVVLDVNDHVPQFSRLVYRAQVPENSDNGSLVVVVTATDLDEGTNKQ
                     ITYSLAENPEAVLRTFLVDPQTGEVRLRGPLDFETIETYDIDIQATDGGGLSAHSKVL
                     VEVVDVNDNPPEVTISSVSSPLAEDSPLQTVVALFTIRDRDVRVGGKITCFLKEDLPF
                     VVKHTFRNSYSLVTDRILDREDVSNYNITLVAMDTGPPSLSTETVIEVVISDINDNSP
                     VFQEDSYVLTVRENNSPAVFIGKVHAEDLDLGENAQVTYSLLPPKSGDLSVFAYISIN
                     SDNGKLYALRTMDYEAIQDFQFVVKATDGGFLSLSSQVTVRVVVLDDNDNRPMILYPL
                     QNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQNSWLSYHLLKATDLGLFSVQRQNGE
                     IRTLRQISERDPMMQKLVILVQDHGQPALSTTASLNILLVDGFSEPYLQFQDPSKHSR
                     KVNPTTKYLVISLAVLSFLFLFSVTVIIIIHLYQKIKHREKFTVQEHFYDDCNFPNNL
                     VQGRGNGSLSQPCPYDMCSATGTGNSEFRFLKRFMPNFPFPHATGEVKTENDASLPPD
                     SNRNRSRGSEGHARAGDDYM"
ORIGIN      
        1 agcttacctg gctggaggag ccagcctttg gccacactgc ggttagaggc tagtaatagg
       61 agaggctggt gtttgtgcaa cctgttgcca aaagtgaaag ccggcgtgcc cctaggactg
      121 gcggcagcgg aggggagtgc atttgtgagg aatcatggca gctgcgcgca ggaagccttt
      181 gcagaacagg caggtgggct ctcttctcct tctctggtgt gtgtctgtgg gaggtgcggc
      241 cactatccgc tattcggtgg cagaggagat ggagagcggt tcctttgtgg ctaatgtggc
      301 taaggaccta gggctagagg tggggaagct ggcagagcgt ggggcgcggc tcgttgccga
      361 gggcaacagg ttgcatttcc ggctccatcg caaaactgga gatttgttcg tcaaagagaa
      421 actagatcgc gaggcacttt gtggcaaagc tgacccgtgt gtgctgcact ttgaaattat
      481 tctcgccgag ccgctccagt ccttccgggt ggaagtcaga gtatttgata tcaatgacaa
      541 tgcaccagtt tttctaaaca aagagcctct tttaaagatt ccagagagca ccccattggg
      601 ctcacgcttt ccactgcaga gtgcccaaga tctggacgtg ggactcaatg gtcttcaaaa
      661 ctacaccttg agtgcaaaca cctatttcca cctgcacaca cgcttccgaa gccatggtcc
      721 caaatatgca gaacttgtgt tggataatcc cctagataga gaggcgcagc ctgaagtcaa
      781 cttgaccatt acagcggtgg atggtgggtc ccctcccaaa tctggcaccg ccaacattcg
      841 agtggttgtc ctggacgtca atgaccacgt gccccagttc tctcgcttgg tgtaccgtgc
      901 tcaggtgcca gagaacagtg acaatggctc tttggtggtg gtagtgactg ccacagacct
      961 ggatgagggc accaataagc agataactta ctctttagct gaaaatccag aagcagttct
     1021 acggacattt cttgttgacc cacaaactgg agaggttcga ctccgtgggc ccttagattt
     1081 tgaaacgata gaaacatacg acattgacat tcaagctaca gatggagggg gtctttctgc
     1141 tcacagcaaa gtcttggtgg aagtggtgga tgtaaacgac aatcctccag aagtgacaat
     1201 ctcctcggtg tccagccctc ttgctgagga ctctccactc cagactgtag tggctctctt
     1261 cactatccga gaccgggatg tgcgagttgg agggaaaatc acctgtttcc tcaaagaaga
     1321 tttgcctttt gtagtcaaac acacattccg gaattcttac tcgctagtca ctgacagaat
     1381 cttggatagg gaagatgtct ccaactataa tatcaccctc gttgccatgg acactggacc
     1441 gcccagtctg tccaccgaga ctgtgattga agtggtaata tctgatataa atgacaattc
     1501 tccagttttt caggaggatt cctatgtctt gactgtccgt gaaaacaaca gtcctgcagt
     1561 ttttattggc aaagtccacg cagaggatct agatttgggt gaaaatgctc aagtaacata
     1621 ctccctgctg cctccaaaga gtggcgatct gtcagtcttt gcttacatct ccataaactc
     1681 agataacgga aagctctatg cgctaagaac tatggattat gaggccattc aagactttca
     1741 gtttgtagtc aaggcaactg atggtggctt tctgtcgttg agtagccaag ttactgtcag
     1801 agtggttgtc ctggatgaca acgacaatcg tccgatgatc ctgtacccac tgcagaatgg
     1861 cactttgccc tgcaatgacc tggtgccaag gtctgcagag gcaggatacc tggtgaccaa
     1921 agtagtggct gttgacggtg attcggggca gaattcttgg ctttcatacc atcttcttaa
     1981 agccacagat cttgggttat tttctgttca aagacaaaat ggggaaatac gtacactgag
     2041 gcagatatct gagagagacc ctatgatgca gaaactggtc attcttgttc aggatcatgg
     2101 ccaaccagct ctctccacta ctgcctcact caacatcctg ctggtggatg gcttttcaga
     2161 gccttacttg cagttccagg atccatccaa gcattctaga aaggtaaatc caaccacaaa
     2221 atatttggtc atttctctgg ctgtgctttc atttcttttt ctcttctccg tcactgtgat
     2281 tattattata cacctctacc agaagattaa acacagagag aaatttacag ttcaagagca
     2341 cttctatgac gactgtaatt tccctaacaa cttggtgcaa ggaagaggca atggctcctt
     2401 atcccagcct tgtccatatg atatgtgctc agccactgga actggaaaca gcgagttccg
     2461 tttccttaag cgatttatgc ccaatttccc attcccccat gccactgggg aggtgaaaac
     2521 agagaatgac gccagtttgc ctccagattc taatagaaat cggtctcggg gttcagaggg
     2581 ccatgccagg gcaggagatg actatatgta attctggcta acatctctca caagaagaga
     2641 aacaggatgt tatagtccat cttgaaagag tcgtcctcat ggaaacagta gactgcaatg
     2701 tttttagttg taaaagtcat atttatgcaa atgtacaagg ttactagatt acaaggatat
     2761 tcaatgaaac tcagcaactt aaaagattct ttcacaaagt attacatgca cataaacacc
     2821 aactctacca taaaatggca taggacacaa taaccccact ctatcttttt gcttgttttg
     2881 tgatggtgtg tgtgtgtgtg tgtgtgtgtg tg
//
