LOCUS       XM_039093369            5483 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protocadherin 9 (Pcdh9), transcript
            variant X7, mRNA.
ACCESSION   XM_039093369
VERSION     XM_039093369.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5483
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5483
                     /gene="Pcdh9"
                     /note="protocadherin 9; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 10 ESTs, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:306091"
                     /db_xref="RGD:1306348"
     CDS             716..4084
                     /gene="Pcdh9"
                     /codon_start=1
                     /product="protocadherin-9 isoform X6"
                     /protein_id="XP_038949297.1"
                     /db_xref="GeneID:306091"
                     /db_xref="RGD:1306348"
                     /translation="MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIP
                     KDLNISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGAS
                     YAEENECFFELEVVILPNDFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSR
                     FPIPSATDPDTGFNGVQHYELLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTY
                     VMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHA
                     TDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASD
                     GSSTPARATVTINVTDVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDKD
                     TDVNGKVICFIEREVPFHLKAVYDNQYLLETSSLLDYEGTKEFSFKIVASDSGKPSLN
                     QTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNADIVYQL
                     GPNASFFDLDRKTGVLTASRVFNREEQERFIFTVTARDNGTPPLQSQAAVIVTVLDEN
                     DNSPKFTHNHFQFFVSENLPKYSTVGVITVTDEDAGENKAVTLSILNDNENFVLDPYS
                     GVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNT
                     SFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEK
                     PAPTDVGLHRLVVNISDLGYPKALHTLVLVFLYVNDTAGNASYIYDLIRRTMETPLDR
                     NIGDSGQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRHASRFKAAQRSKQGAEW
                     MSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPINGTISLPAELEEQS
                     IGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKKHHVIQELPLDNT
                     FVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKNDLIPVTHQKCP
                     SSTGFHIRENEESHSESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQ
                     PQDEFYDQASPDKRTEADGNSDPNSGKLTKSVRC"
ORIGIN      
        1 caagaaattc agttcagaga gaggagagag aggagaggga gaaggagaag ggggtagaag
       61 agaagggaaa agcgaagagt acgcgaggta ggaaggagag cctcagtctc tggagcgcga
      121 aagagctcac ggattaagaa tttgccgggc aattggcacc ccgggaaaac atccagaaaa
      181 tcaccatcac ccaactctga cgtttcctac cagaagttaa agacttcagc agtattgcca
      241 tcggatgcaa atggtaggct ggatactgtg ggatacactc ccgagctgaa gtagtgcaat
      301 tggatgtggc gtgcgttaaa taccagaaga gcccagaccc agtgggtaaa agcgaggaaa
      361 tgtggagaga atgactaacg acaaatctgt gaatttgttc tcgggagttg ctaatttgcc
      421 agcccgaagc cacacatttt acaaggagga aacgttttgc tgcttctgaa ttctccccaa
      481 actggtgcta ccagatgcat ggctttctat gtgttggaac aaatccttct taactgcagc
      541 ctactgggaa aggggcaagg ttgaggcaac taactggctg tctccacata agagatgaga
      601 tgtaatgcct cctcctcctc cggtccatgc acacttcctc ttgcaatccg tgcatcattc
      661 ctcagtggga acctttaaac tctaaaatcc aagggaagaa aataaagaca ttatcatgga
      721 cctgagggat ttttacctgt tggctgctct gattgcctgt ttaaggctgg attccgcaat
      781 agctcaagaa cttatttaca ctattagaga ggaattgccc gaaaatgtgc ccataggaaa
      841 tataccaaag gatctgaata tttctcacat caacgctgcc acagggacga gtgccagcct
      901 tgtctacagg ctggtttcta aagctgggga tgcccctctg gtgaaagtat ccagtagcac
      961 tggggagatt ttcacaacct ccaacagaat agacagagag aaactctgtg ccggagcttc
     1021 ttatgctgag gagaatgagt gtttctttga acttgaggtg gtgatcctcc ccaatgactt
     1081 tttcagactg atcaaaatca agatcattgt caaggatacc aatgataatg cccccatgtt
     1141 tccgtctccc gtcatcaata tttccatccc agagaacact ttgatcaaca gtcgctttcc
     1201 aatcccatca gccacagacc ctgacacggg cttcaatggg gtacagcatt atgaattgct
     1261 gaatgggcag agtgtttttg gactggatat cgtggaaact ccggagggag aaaagtggcc
     1321 gcaattgatc gttcagcaga acttggatag agaacaaaaa gatacctatg tgatgaaaat
     1381 caaagtggag gatgggggca ctccacagaa atccagcaca gccatactcc aggtcacagt
     1441 aagtgatgtc aatgacaaca ggccagtgtt taaagagggt caagtggaag tgcatattcc
     1501 agagaatgct cctgtaggga cctctgtgat tcagctccat gctactgatg cagacatagg
     1561 cagcaatgct gaaatccggt acatctttgg tgcccaggtc gcccctgcaa ccaaaagact
     1621 ctttgcttta aataacacaa ctgggctgat tacagttcag aggtccttag atagggaaga
     1681 gacagccatt cacaaagtga cagtgctggc tagtgacggc agctccactc ctgccagagc
     1741 caccgttacc atcaatgtca cagatgtaaa tgataatcct ccaaacatag acctcaggta
     1801 cattataagt cccatcaatg gcaccgtgta tctctctgag aaagatccag tcaatacaaa
     1861 gattgcccta attacagttt cagataagga cacggatgtg aatggcaaag tgatctgttt
     1921 tattgaaaga gaggtcccat ttcatctgaa ggcagtgtat gacaaccagt atctgctaga
     1981 gacctcgtct ctgctggact atgagggcac caaagaattc agctttaaaa tcgttgcctc
     2041 tgattctggg aagcccagtt tgaatcagac tgccctggta agggttaagc ttgaggacga
     2101 aaatgacaac ccaccaattt tcaaccagcc tgtaattgag ctgtcagttt ctgaaaacaa
     2161 ccgacgtggg ttatacttaa caactattag tgctacggat gaagacagtg ggaaaaatgc
     2221 agacattgtt tatcagcttg gacccaatgc ctccttcttt gatctggaca gaaagacagg
     2281 agttctgaca gcctccagag tctttaacag ggaggaacaa gagcggttca tttttacagt
     2341 aactgccagg gacaacggga cccctcccct gcagagccaa gcagccgtga tagttactgt
     2401 tctggatgag aatgacaata gccccaagtt cactcataat cattttcagt tttttgtgtc
     2461 tgagaatctg ccaaagtata gtactgtggg ggtaatcaca gtgacagacg aggacgctgg
     2521 agagaataaa gctgtgactc tttccattct aaatgacaat gaaaatttcg tgttggatcc
     2581 ctattcagga gtcataaagt ccaatgtctc ctttgataga gaacagcaga gttcctacac
     2641 gtttgatgtc aaagccactg acggaggaca gccacctcgg tcctctactg caaaagtaac
     2701 tatcaatgtc atggatgtca atgacaatag tccagttgtc atttctccac catccaacac
     2761 ctcctttaag ttggtgcccc tctcagccat tcctggttcc gtggttgctg aagtttttgc
     2821 tgtggatatt gacaccggga tgaatgcaga acttaagtat accatagtga gcgggaacaa
     2881 caaaggatta tttcggattg atccagtaac gggcaatatc accttagaag aaaagccggc
     2941 acctactgac gtgggcctgc accgtctcgt ggtcaacata agtgacctgg ggtaccctaa
     3001 ggctttgcac actcttgtgc tggtatttct ttacgtgaac gacactgctg gaaacgcctc
     3061 gtatatatat gacttgatcc gtaggactat ggagaccccg ctggacagga acataggaga
     3121 tagtggtcaa ccttatcaaa acgaggacta tctcaccatc atgattgcca tcgttgccgg
     3181 ggccatggtc gtcatcgtcg tgatctttgt cacggtgctg gtgcgctgtc gccatgcgtc
     3241 gaggttcaag gctgctcaga ggagcaaaca aggtgctgaa tggatgtccc caaaccagga
     3301 gaataaacaa aacaagaaaa agaaacggaa gaaaagaaag tcgcccaaga gttctctttt
     3361 gaactttgtt actatcgaag agtccaaacc tgatgatgcg gttcatgaac ctatcaatgg
     3421 gaccataagc ctgcctgctg agctggagga acagagtata ggaagatttg actggggccc
     3481 ggcccctcca acaaccttca agcctaacag ccctgacctg gccaagcact acaaatctgc
     3541 ctctccacag cctgcgtttc atctcaaacc agacactcca gtttccgtga aaaagcacca
     3601 cgtcattcaa gagctccctt tggacaacac ctttgttggg ggctgcgaca ccctttccaa
     3661 acgctcctcc actagttcag atcacttcag tgcctcagag tgcagctccc aaggaggctt
     3721 caagacaaag ggccccttac acaccagaca gtgtaactca cacagcaaaa atgaccttat
     3781 tcctgtcaca catcagaaat gccccagctc taccggtttc cacattcgag agaatgaaga
     3841 aagtcattct gagtctcagc gtcgtgttac ctttcacctt ccggatggct cccaggaaag
     3901 ctgcagtgac agtggtctgg gagaccacga gccggtgggt agtggaaccc tgatctcaca
     3961 ccctcttcct ctggttcagc cacaggacga attctacgac caggcctctc cggacaagag
     4021 gaccgaagca gacggcaact cggaccccaa ttctggcaaa ctaaccaagt cagtgagatg
     4081 ctagcttccc aggtttgacg tttgaggagc gtatcagaca gaaaatggca cgatttttca
     4141 ggtaaacatt ttcaggtatg gagagctaat taaatttcaa actatcttat tgtaagatgc
     4201 aaaaaattgt atattaataa tgtatatatt atttcaatct ccattaattt aactttatgt
     4261 tttatatttg ccttcaaaaa tgaaattcct tcaaagttgt atttagacat atacactgtg
     4321 cagtatctaa atgtttacca tttatttgca aaataaaagc tattaaagat ctaatttggg
     4381 gcacggagat gagtgaatgg tttagagcac tagaagctct cgtagaggag aacagtttat
     4441 taaacaccaa ctacatcgaa gctcacaact gtctgtaact ccaggtccag aagattaaat
     4501 atcaaatggt tcatcacgaa tgtgatgtac atgaagacat ccatgcaaat tatattaata
     4561 agtccttttt acaaaattaa cattgttatt tattctagaa ttctgacata taaaatgcat
     4621 agctgccatc tgtactgaga atcaaaaaaa taaatcaaga atcttaaaac aaatggtcaa
     4681 atttgggcta tgggtctgaa aagagtaaaa ggaaaaagaa attaaaatga taagaagtac
     4741 gtttgaaaat gttgaacatt cttaattttc agttaggaaa tgcaaactaa agctattctg
     4801 gcttgcaata ttacccagtt agaatgagga aggtaagaaa ataattaaca agtgctcctg
     4861 agaatgtgga gcaaagcaga atgcatccat tgttgatggg tttgcaaact ggtgcagtca
     4921 gtgtggaaat cagtgtagag cagcctcaga aagctaaaac tacgtggacc atatggctcc
     4981 ttatcccacc caccctctgg caaatatccc agtgactcaa cgttcttctc caccaatcct
     5041 tactcagcct tcttcatggc tgttccactc acagtaactt gggaatgaga acgatctaaa
     5101 tgttattcaa ttgaggaatg ggcgacaaaa gtggactcca tgcacacatt gaaactctct
     5161 tcaacttgaa agaaaaaaaa aacagaaatc atggaaatag ccaataaata tatggatcta
     5221 gaaaatacta aattcagtga gataatctag actcagtaag ttagtgccgc aggtgccctc
     5281 ttatttagat actagcaccc aatcgacagc tatgattaat tccctggagt aaccacaaaa
     5341 agagaagaat gaaagattgc ttgggacagg gaggaaggga ttccagataa aaaaggaata
     5401 ggacagagct gtgaagaagg agatcgcagc acaggaagta ggttaagggg taatgggagg
     5461 gaggattata gagagggaga ata
//
