LOCUS       NM_001401429            8733 bp    mRNA    linear   ROD 26-APR-2024
DEFINITION  Rattus norvegicus protocadherin 7 (Pcdh7), transcript variant 2,
            mRNA.
ACCESSION   NM_001401429 XM_006251017
VERSION     NM_001401429.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 8733)
  AUTHORS   Wang,Y., Kerrisk Campbell,M., Tom,I., Foreman,O., Hanson,J.E. and
            Sheng,M.
  TITLE     PCDH7 interacts with GluN1 and regulates dendritic spine morphology
            and synaptic function
  JOURNAL   Sci Rep 10 (1), 10951 (2020)
   PUBMED   32616769
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8733)
  AUTHORS   Yoshida,K.
  TITLE     Fibroblast cell shape and adhesion in vitro is altered by
            overexpression of the 7a and 7b isoforms of protocadherin 7, but
            not the 7c isoform
  JOURNAL   Cell Mol Biol Lett 8 (3), 735-741 (2003)
   PUBMED   12949613
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Feb 11, 2022 this sequence version replaced XM_006251017.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY690615.1, SRR26360194.679325.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840105, SAMN12840132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4230              JAXUCZ010000014.1  57109293-57113522   c
            4231-4447           JAXUCZ010000014.1  56904283-56904499   c
            4448-8733           JAXUCZ010000014.1  56684817-56689102   c
FEATURES             Location/Qualifiers
     source          1..8733
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q11"
     gene            1..8733
                     /gene="Pcdh7"
                     /note="protocadherin 7"
                     /db_xref="GeneID:360942"
                     /db_xref="RGD:1303209"
     exon            1..4230
                     /gene="Pcdh7"
                     /inference="alignment:Splign:2.1.0"
     CDS             1057..4824
                     /gene="Pcdh7"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2"
                     /codon_start=1
                     /product="protocadherin-7 isoform 2 precursor"
                     /protein_id="NP_001388358.1"
                     /db_xref="GeneID:360942"
                     /db_xref="RGD:1303209"
                     /translation="MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPA
                     DVRIGNVASDLGIVTGSGEVTFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMI
                     FDENECFLDFEVSVIGPSQSWVDLFEGRVIVLDINDNTPTFPSPVLTLTVEENRPVGT
                     LYLLPTATDRDFGRNGIERYELLQEPGGGGGGGEGRRLGPADSAPYPGGGGNSGSGGG
                     SGGSKRRLDAPEGGGGTGPSGRSSVFELQVADTPDGEKQPQLIVKGALDREQRDSYEL
                     TLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAENSAPGTPILQLRATD
                     LDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQ
                     PPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQVSDR
                     DQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSAPLDYETTREFNVVIVAV
                     DSGSPSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLATDADSGK
                     NAEIAYSLDSSVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTT
                     VIVQVADKNDNDPKFMQDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENS
                     NIFSIENDTGTIYSTMSFDREHQTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAP
                     TVTLPRNISYTLLPPSSNVRTVVATVLATDSDDGINADLNYSIVGGNPFKLFEIDSTS
                     GVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTTTLVHVFVNESVSNATVIDSQIVRS
                     LHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVMMARYCRSKSKNGYEA
                     GKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPNGQRYDSVNEKLS
                     DSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTF
                     VGAGDNISIGSDHCSEYSCQTSNKYSKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLE
                     ESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVGEAEHMENDSRPLPDVALTGKCTR
                     ECDEYGHSDSCWMPVRTSPERKKSQPKLSTFMPVDERGSQEKLANGEAAIMGDRNRNL
                     LNKKLTSSYETFSAASFSKNEEANPEDIPLTKTGEYKPSPVNTLTRREVYL"
     exon            4231..4447
                     /gene="Pcdh7"
                     /inference="alignment:Splign:2.1.0"
     exon            4448..8733
                     /gene="Pcdh7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcaatctcct ccctgaatcg cgcacagcgc tgcagatccc actgctccaa cccgcgggcc
       61 gaatgcaggt gagggaaggc acggactctg cggctgagaa tccaaacttg ggcaccgcgc
      121 ggtgcgcacg gttcggctct cgcccccgcg ggcgaatggt tgctgcggtt tcaggcggcg
      181 gcttcgtgac taatgacctt gcgcagagtt gttaagaaaa aagagaaacc cgagctctcc
      241 ggggtgagaa gcgaccgact ctgggcgtct ctgaagatgg ctcgggctgc tccttggcgc
      301 gccgagagca cccggtcgcg gaccgagctg tgacgccagg cgtcttcgct gcaccttgcc
      361 cgaagcgacc tgccgtggaa tttttcattc aagatatgtt gagtgcttcc cggctgcttt
      421 agaggagtca gagttgagac tggcttgttg ctcgccccag agactggagc aggaagcggc
      481 tcacgtttgt ttggacctcc ggagcctaaa cagagcctgg gtctagagtg agtagctgga
      541 acgtgaattg gacttaactc gagtagcagt aaggactagc agggctgtca ggcggggaag
      601 gctgcaggtt tgctccagtc cgctaccaga ctccgccgcc ctcttgccga agcggttccg
      661 gccccttccc agggcttggg gactggatct caggatcttc ccgctgaggg gatgactttg
      721 tgggggcacc aagcccgtgg cgcgcagtgt cccgtgaact gtgagtactg cgagtaaacg
      781 gtggccggcg agcgggcgat tagcacccat tgcatgaatt atgaaacaat aactttcgga
      841 agaagcagaa ggagaaaaaa aagaagcatc tatagctgac ccccctccca tcagcggact
      901 ctactcgcta ctctggcccc cctccctccc ctccctctca tttcttcctt tcccggagag
      961 gaggaccgag gggagggcag gcggccagcc ccggaggagg ggggtgacga ggggggttgt
     1021 ggttagaagg agcagtagca gcagcagcaa gagaagatgc tgaggatgcg gaccacggga
     1081 tgggcgcgcg gctggtgctt gggctgttgt ctccttctgc cgctctgctt cagcctggct
     1141 gccgccaagc agctgctccg gtaccggctg gctgaggagg gccccgccga cgtgcggatc
     1201 ggcaatgtgg cctcggacct gggcatcgtg accggttctg gtgaggtgac tttcagcctt
     1261 gagtctggct ctgagtatct gaagattgac aacctcaccg gcgagctgag caccagcgag
     1321 cggcgcatcg accgagagaa gctgccccaa tgtcagatga tcttcgacga gaacgaatgt
     1381 ttcctggact tcgaggtgtc ggtgataggg ccctcgcaga gctgggtgga cctgtttgag
     1441 ggtcgggtca tcgtgctgga catcaacgat aacacgccca ccttcccgtc gccggtgctc
     1501 acgctcacgg tggaggagaa ccgacctgta ggcacgctct acctgctgcc cacggccacc
     1561 gatcgtgact ttggtcgcaa cggcatcgag cgctacgagc tgctccagga gcccgggggt
     1621 ggtggcggcg gcggcgaggg aaggcgcttg gggccggcgg acagcgcccc ctacccaggg
     1681 ggcggcggga acagcgggag cggcggcggc tctgggggat ccaagcggcg gctggacgcg
     1741 cctgagggtg gcggtgggac tggtccaagt ggtcgaagca gtgtgttcga gctgcaggtg
     1801 gcggacactc cagacggcga gaaacaaccg cagctgatag tgaagggggc gctggaccgg
     1861 gagcagagag attcctatga actgaccctc cgagtgcgcg atgggggcga cccacctcgg
     1921 tcctctcagg ccatcttgcg ggtgctcatc accgacgtga atgacaacag ccctcgcttc
     1981 gagaagagcg tgtatgaggc tgatctggct gagaacagcg ctcccggcac ccccatccta
     2041 cagttgcgcg ccaccgattt ggacgtaggg gtcaatggac agatcgagta tgtatttggg
     2101 gcggccaccg agtcggtgag acggctactg cgtctggatg aaacatcggg ctggctcagt
     2161 gtcttacacc gtatcgaccg cgaggaagtg aatcagttga gattcacagt aatggcccgt
     2221 gaccgcgggc agccccccaa gaccgataag gccaccgtgg tcctcaatat caaagatgag
     2281 aacgacaacg ttccctccat cgaaatccgc aagatagggc gcattccgct taaggacggg
     2341 gtggccaacg tggccgaaga cgtcctggtg gacaccccca tcgccctggt acaagtgtcc
     2401 gacagagacc aaggcgagaa cggggtagtc acctgtactg tggtgggaga tgtgcctttt
     2461 cagcttaagc cagccagcga caccgaggga gatcagaaca agaaaaagta cttcctgcac
     2521 acatcagccc cactggacta tgagaccacc cgggagttta acgtggtcat agtagctgtg
     2581 gactccggca gtcccagcct ctccagcaac aattccttgg tggtcaaggt gggagacacc
     2641 aacgacaacc ctcctgtctt tggccagtcg gtggtcgagg tttactttcc agaaaacaac
     2701 attcccgggg agagggtagc cacggtgctg gcgacagacg ctgacagcgg gaagaatgca
     2761 gagatagcct actcgctgga ctcttcagtg atggggacct ttgccatcga tcccgattct
     2821 ggggacatcc tggtcaatac agtattggac cgggagcaga ctgacaggta tgagtttaaa
     2881 gttaatgcca aagacaaagg cattcctgtg ctgcaaggca gcaccacggt gattgtacag
     2941 gtggctgata aaaatgacaa cgaccctaag tttatgcagg atgtctttac cttttatgtg
     3001 aaggaaaact tgcagcccaa cagccctgtg ggtatggtca ccgtgatgga tgctgacaag
     3061 ggacggaatg cagagatgag tctgtacata gaggagaaca gtaacatttt ttctattgag
     3121 aatgacacag ggaccattta ctccacgatg tcttttgaca gggaacatca gacaacatac
     3181 actttcagag tgaaggcagt ggatggagga gatcctccca ggtcggccac agccacagtc
     3241 tctctctttg tgatggatga aaatgacaat gctcccacag ttacccttcc cagaaatatt
     3301 tcctacacgt tgctgccacc ttcaagtaat gtcaggacag tagtagcgac agtgttggca
     3361 acagacagcg acgatggcat caatgcagac ttgaactata gcattgtggg agggaatcct
     3421 ttcaagctgt ttgagattga ttccaccagt ggtgtggttt ccttagtggg gaaactcacc
     3481 caaaagcatt atggcttgca caggctggtt gtgcaagtga atgacagcgg ccagccttcc
     3541 cagtccacta cgactttggt gcatgtgttt gtcaatgaaa gtgtttccaa tgcaactgtg
     3601 attgactctc agatagtccg aagtctgcac accccactca cccaggatat agctggtgac
     3661 ccaagctatg aaattagcaa acagagactc agtattgtca ttggggtggt ggctggcatt
     3721 atgactgtga ttctaatcat tttaattgtc atgatggcaa gatactgcag gtccaaaagt
     3781 aaaaatggct atgaagctgg caaaaaagac catgaggact tttttacacc ccagcagcat
     3841 gacaaatcta agaagcctaa aaaggacaag aaaaacaaaa aatctaaaca gccactctac
     3901 agcagcatcg tcactgttga agcttctaaa ccgaatggac agaggtatga cagtgtcaat
     3961 gagaagctgt cagacagccc cagcatgggc cgataccgat ctgttaacgg tgggcctggc
     4021 agtccagacc tggcaaggca ttacaaatcc agttccccgc tgcctactgt ccagcttcac
     4081 ccccagtcac caactgcagg gaaaaaacat caagctgtac aagatctacc accagccaac
     4141 acatttgtgg gagcaggaga caacatttca attggatcag atcactgctc tgagtacagc
     4201 tgtcaaacca gtaacaagta cagcaaacag ccgtttcgta gagtgacgtt ttctgttgtg
     4261 agtcagcctc aggacccaca tcaggggtca ctgcagagtt gctatgacag cgggctggag
     4321 gagtcagaaa caccaagcag taagagttca tcagggccaa gactgggtgc ccttccactc
     4381 ccagaggaca actatgagag gaccacgccg gatggcagtg ttggtgaggc agagcatatg
     4441 gaaaatgatt caaggcctct tccggatgta gcgctgactg gcaagtgcac ccgtgaatgt
     4501 gacgagtatg gccattcaga ctcctgctgg atgccagtgc gcacttcccc agagaggaag
     4561 aagagccagc ccaaactctc cactttcatg cctgttgatg aacgaggaag ccaggaaaag
     4621 ctggccaatg gcgaggctgc catcatgggt gaccgcaaca gaaacctcct gaacaaaaag
     4681 ttgacctcat cctatgagac cttcagtgca gctagtttca gcaaaaatga ggaagccaac
     4741 cctgaggata ttcctttaac aaaaacaggg gaatataagc catctcctgt caacactctc
     4801 actagaagag aagtttatct gtaggttgtc aaggcgcaac agcaagttct tttcatgtac
     4861 gaggagagtt aggggcaaaa acattactaa ataaaaccat ttaatcacaa agagggggct
     4921 accaaagaga caaagcttgc ctgccacttc cgcctccaaa tcaggccttt agtgttactg
     4981 tttgcctgac aacagtgtac aaagtagaat ccattcttgt cacctgcatg tctacaccct
     5041 tcactgatcc ccaacaccca ccctctttcc cctacccctc ctcaaaccca aataacaaca
     5101 acaacaacaa caacaacaaa agatggttgc aagttctttt catggtaacg agtctgatta
     5161 gcagaacata atacactctc attatcccta atctgaagca tgattttggt cactttgatt
     5221 tgtttgagtg tcatctggct tgttaataaa agaagaatcg gtaaaaaaaa tactacagac
     5281 tattattgct ctattattgt taaagttagc ccattggaat tgataaaatc cctttaatgg
     5341 cccagtcctt atatagagaa ccctttgaaa aaggcattta ggatgacaac atctttaaca
     5401 ttctaacaaa caaagtgcga attaaaactc agtagaagaa tgcagttcca agctcccata
     5461 tgttgttagt tttgggtcaa aggcatcaac ttctgtccca taaattcaca gaatatactc
     5521 acccaatctt gacaaaacat ttacatgaat tataattttt aaaagtaggt tttggaataa
     5581 aatctctcat gaatgaactt gaactcttgt gtcattatga ggccaaagat cacatggcag
     5641 atcagggaaa taataaaatc gatttggtcc tgacatagaa agccactaaa caacagaagg
     5701 aactgaacct gtgcacactc agatgctagt tggtcttatg tcaactcttc ttcaagaaaa
     5761 ctcttcttct ttataaaatg aactttagtt acatgctcag aaaatgaaag aactaataag
     5821 acacatgtgt tgtctcataa taagcaactg atcaaagccc aggtctattc tcatgtgtta
     5881 ctgtcaggga agaatctaca ttttaatgcc atattgatgt ataatgagat acaaaaagac
     5941 atactggagt atgacttcat gaggtctcct attgtcattt caggatccca gctgttcttg
     6001 gtgatcttat tatcatttct aattataatt gcatttttca cttggtcaga acataatgat
     6061 ttcaaattct gtgcaacata gaaacatttt gagactccaa catttaaaca acataacact
     6121 ttaattgact ttccattaat gtaatttgac tattcttcaa tgtgcgtctt aaacaatctc
     6181 tgaacaggaa agaatgagtt ccagacaata ttttatttaa cacagtatat gcatctcaaa
     6241 gttggaaaat gtatagtttt ttttcaagag atacagaata tacagatttc gaatgctttg
     6301 ctctatgcaa gatgatttaa gaaacctgaa atttgagctg ggacatccag aagaaagtga
     6361 caatccatga acaaaatagg ggacgacagg taaagagagc aaacatgctc atcagtgaat
     6421 gctacttact tggttaaacc atagccttga tggctttcta caaaaccaca gaaacactgt
     6481 agctttggac agtttcatgc tttgcagatt ttcttagact ataaggtgaa gaaagctaga
     6541 ctataggttg ataactcatt gtaggtcatc aaagttctta tctttgagga acatttctct
     6601 ggtgggactt ttgggatcat ttccttatgc tctttcttaa agtggaattt tcattttgat
     6661 gttagtttat gtataatagg tagaaggaaa aagatgtaat taatataaaa acattggact
     6721 aaaataccaa taattgaaca tgctcatgtt tggttattat ttacactatg gaaagatgaa
     6781 gttctagaac cttgttagga aactgcattc aagcagttct gccttgtata atctgtaagt
     6841 acctattaag acgaaatact tctaaagata cttatgaaaa tgtatacata tttttcttgc
     6901 acgttacaaa ggaaataatt gcataacact gatgttcaac actttttata tgcatatttt
     6961 ctttctttca tgggacactt gaagccacta gatagctcat ttcaccatta aattcctttg
     7021 gttgtctata aagctaatac aggtcacact ggacctacag attcagtcaa ggcacattcc
     7081 atggtgatgt ttgcaccaca tgccaggcag tcatgtcatt gtcctttaac gtgtgaacct
     7141 ctctttagaa ctaaaatgga tgtgaaagaa tacaattcag tgtactgtaa gtattcgaag
     7201 taattctagt agaattagtt atcataacat gtttattata taatgagctg gcatgacata
     7261 caaatatatt ttgtgtttgt atgactttta ttttgactag gttaaatctg gtgccactcc
     7321 atatatagag tgcttttgaa aaaaaaataa aatcaaaaaa aataaataaa tgagtgaatg
     7381 caaaataagc aactgtgcct tttatacctc ttgttatggt aaacaaacaa gcaaacaaca
     7441 aacaaacaaa cgaatggttg ttgggtttga ataatgaggg gaaatgggct actcccaact
     7501 tttttgatcc tgtatattta tccttgttta ttttctgaga ataaataata tattaaaact
     7561 ttgccttctg acaaactcag ataaaggacc agtcttgaat attgttcatt cataagacaa
     7621 gattcaggca ttaatatggg gctgcttaaa tctcactgga caatgaaatc attggttaca
     7681 gaatcacaca gggaaatact atcaggggtg aaatcagtcc attcttgcaa ggtagaatat
     7741 tgatttagaa gttttgattt tctctctctc tctctctctc tctctctctc tctctctctc
     7801 tctctcttta gatggtcttt catttttggt tgtacagtat ataaactctc tttgttttct
     7861 gtacacagac tctcaagtgg acttctgcat ggtaatacat taggacacat ttacaaattg
     7921 agtaactata caaatgtatg tgtatttaaa tgtctgtagc atctgtctaa aattgactgc
     7981 tctgttttga atctagagag agcattgttg tctgattttc tttctttttc tttttatttt
     8041 tttttaaact ggcctgttgc ctgagtttca gaaaacggag aaggcattat ttttatgaga
     8101 gaaggaacta aggtggtaca gaggatgttt gcctgaaagg ctaccctggg aggctaggtt
     8161 agagcaaaaa tacaaaagga aatacacagg ccagaaagaa actgccagga atcaaacagc
     8221 catcttaaaa cagttgtgtg aaatcttaag acctatgtca tttcatataa taggttatag
     8281 cagaagtaaa tacatagtat ctccttaaaa tagtaaatta aaggagcaaa gttcatcagg
     8341 gatatgataa gcttggtaat tgtgacccag gcgtggtgtg tgtgacatct ggatgcggca
     8401 tcattcgttc agctacctag ggtttacttt cagacaactt ttcctacatt ttaaagcact
     8461 tgcattccgt gtggtacgat ctgtttgtaa tgttaatcat tgactattgt tctgctactt
     8521 ggatgttgat agtgaagcag agaacaatta atcatcattg attatgtcac tatgcacgcg
     8581 actttgctaa acatggagaa atgtattaaa cactcgtcca actatttatg agatacttta
     8641 cataatttaa tttgcttttg tacagtttta tgtaaataaa ttgcttgtca tttttgtctt
     8701 tacaaaatta aaatataaca tgatcaaatg gtt
//
