LOCUS       NM_001107280            5179 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus protocadherin 20 (Pcdh20), mRNA.
ACCESSION   NM_001107280 XM_001074783 XM_224417
VERSION     NM_001107280.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5179)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473951.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001074783.1, XM_224417.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN14984024,
                              SAMN14984031 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5179
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15q12"
     gene            1..5179
                     /gene="Pcdh20"
                     /note="protocadherin 20"
                     /db_xref="GeneID:306081"
                     /db_xref="RGD:1306297"
     exon            1..237
                     /gene="Pcdh20"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..2964
                     /gene="Pcdh20"
                     /codon_start=1
                     /product="protocadherin-20"
                     /protein_id="NP_001100750.1"
                     /db_xref="GeneID:306081"
                     /db_xref="RGD:1306297"
                     /translation="MRGQGNARSSLVQAVSLRPATWHPCLDMGHLHRPSSRTSHRNLP
                     HVVLLFLFVGPFNCLASYSRATELLYSLNEGLPAGVLIGSLAEDLRLLPRASGRQSQQ
                     LLHPERTAAEGNPPLSFSLASGGLSGQYVTLDNRSGELHTSAQEIDREALCLDGGGGA
                     AWGGSTSIASSPSSDSCLLLLDVLVLPQEYFRFVKVKIAIRDINDNAPQFPISEISVW
                     VPENSPVNTRLAIEHPAVDPDVGINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVM
                     GALDRETQDQYVSIIIAEDGGSPPLLGSATLTIGISDINDNCPLFIDSQINVTVYGNA
                     TVGTPVTTVQAVDRDLGTNAQITYSYSQKVPQESKELFHLDEVTGVVKLSSKIGGNVL
                     QTHKLTILANGPGCIPAVITALVSIIKVVFRPPEIVPRYIANEMDGVVYLKELEPVNT
                     PIAFFTIRDPEGKYKINCYLEGEGPFRLAPYKPYNNEYLLETTKPMDYELQPFYEIAV
                     VAWNSEGFHDKRIIKVQLLDDNDNAPVFLQPLIELTIEENNAPNAFLTKLYATDADSG
                     EMGRVSYFLGPDAPSYFSLDSVTGILTVSTQLDREEKEKYRYTVRAVDCGKPPRESVA
                     TVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADAGRNGWVALSVMNQ
                     SDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGEPALSSTTKITILLLDINDNP
                     PLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRI
                     DPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIES
                     LLRKEPEINIEEKEPQISIKPTHRKVESMSCMPTLVALSVISLASITLVTGMGIYICL
                     RKGKKHHREDDNLEVQIPLKGRIDLCMRERKPMDISNI"
     exon            238..5179
                     /gene="Pcdh20"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accagtgact attggctgaa gttccccagc gatttgcatg aacagagagg gagtgtcctc
       61 tgccaccctc ccttctggag cgctctgact gcagcctccc agggaatgcg cggccaaggg
      121 aacgcgcgca gctcgctggt ccaggcagtg agcttgcgcc cagcgacctg gcacccgtgc
      181 ctggatatgg ggcatctaca tcgtcccagc agcaggacca gccacaggaa cctgccgcat
      241 gttgttctgc ttttcctctt cgtgggaccc ttcaactgcc tcgcgagtta cagtcgtgct
      301 accgagcttc tgtacagcct aaacgaagga ctgcccgcgg gagtgctcat aggcagcttg
      361 gcggaggacc tgaggttgct gcctcgggcc tctgggagac agagccagca gttgctgcat
      421 ccagagcgca ctgctgctga ggggaacccc cctctctctt tcagcttggc ctccggggga
      481 ctgagtggcc agtatgtgac cctagacaac cgctccgggg agctgcacac ttctgcacag
      541 gagatcgaca gagaagcatt gtgcttggat ggtggtggag gggctgcctg gggcggcagt
      601 acctccattg cctcctctcc ttcttctgat tcttgccttt tgcttctgga tgtgctggtc
      661 ctgcctcagg aatattttag gtttgtgaag gtgaaaattg ccatcaggga tatcaatgac
      721 aatgctccgc agttccccat ttctgaaatc tctgtttggg tcccggaaaa ttcacctgta
      781 aatacccgat tggcgataga gcatcctgct gtggacccgg atgtaggcat taatggtgtg
      841 caaacctatc gcttactgga ctaccatggt atgtttaccc tagacgtgga ggagaatgag
      901 aatggggaac gcacacccta cttgattgtc atgggcgctt tggacagaga aacccaggac
      961 cagtatgtga gcatcatcat agctgaggat ggtgggtctc cgccattgct gggcagcgcc
     1021 accctcacca ttggcataag tgacattaat gacaattgtc ctctcttcat agactcacaa
     1081 attaatgtca ccgtttatgg aaatgctaca gtgggcaccc ctgtcacaac agtccaggct
     1141 gtggatagag acttggggac aaacgcacag atcacttaca gttacagtca gaaagttcca
     1201 caagaatcca aggaattatt ccacctggat gaagttactg gagtcgttaa gctttccagt
     1261 aagatcggtg ggaatgttct acagacacat aagctcacca tcctcgctaa cggacctggc
     1321 tgtattcccg cagtgatcac tgctctcgtg tcgatcatca aagtcgtttt cagaccccca
     1381 gaaattgtcc cacgttatat cgcaaatgag atggatggtg tcgtgtatct gaaagaattg
     1441 gagcctgtta atactccaat cgcgtttttt accatcagag atccggaagg caaatacaaa
     1501 attaactgct acttggaggg tgaagggcca ttcaggctag caccctacaa gccatacaac
     1561 aatgaatact tgttggagac cacaaaacct atggactatg agctgcagcc gttctatgaa
     1621 atagctgtag tggcctggaa ctcagagggg tttcatgaca agagaatcat taaagtacaa
     1681 cttctagatg acaatgacaa tgcccctgtt ttccttcagc ccttgataga actgaccatt
     1741 gaagaaaaca atgcacccaa tgcctttctg acgaagctct atgctacaga tgccgacagt
     1801 ggagagatgg gccgagtttc ctacttcttg ggacccgatg ctccgtccta tttttcctta
     1861 gacagcgtca cagggattct gaccgtttcc actcagctgg acagagaaga gaaagaaaag
     1921 tacaggtaca ctgtccgagc agtggactgt gggaagccac ccagagaatc agtggctaca
     1981 gtggctctca ccgtgttgga taaaaatgac aacagtccga ggttcatcaa caaagacttc
     2041 agcttttttg tgccagaaaa ctttccggga tatggtgaaa ttggagtcat tagtgtaaca
     2101 gatgctgatg ctgggaggaa tggatgggta gccctctcgg taatgaacca gagtgatatt
     2161 ttcgtcatag atacaggtaa aggcatgttg agagctaaag tctctttaga cagagaacag
     2221 caaagctcat acactctgtg ggtggaagct gttgatgggg gtgagcccgc cctttcttct
     2281 accacaaaaa tcacaattct ccttctggac atcaatgata accctcccct tgttttgttt
     2341 cctcaatcta atatgtctta cttgctggtc ctaccttcta ctctccctgg ctcaccagtg
     2401 acagaggtct atgcagttga caaagataca ggcatgaatg cagtcatagc ttatagtatc
     2461 atagggagaa gaggtcccag gcctgagtcc ttcagaattg accccaagac tggcaacatc
     2521 actctggagg aagccttgct gcagacagat tatggtttgc atcgcttact cgtgaaagtg
     2581 agtgatcacg gataccccga acctctccat tccacggtca tggtgaactt atttgtcaat
     2641 gacactgtca gtaacgagag ctacattgag agccttttaa ggaaggaacc agaaattaat
     2701 atagaagaga aagaaccaca aatctcaata aagccaactc ataggaaggt agagtctatg
     2761 tcctgtatgc ccacattggt ggctctgtct gtcataagct tggcttccat cacactagtt
     2821 acagggatgg ggatatacat ttgcttacgg aaaggtaaaa aacatcacag ggaagacgac
     2881 aatttggaag tacagattcc attgaaagga agaattgact tgtgtatgag agagagaaaa
     2941 ccaatggaca tttctaacat ttgatatgcc atcgtggagt cacacggagg gacgttttaa
     3001 ctgccacagg gagtctttgt cacacgaaca acagtgtgct gatgcagttc cactaaagga
     3061 caattaattt ataatttgta tcatattgta aatagctgtt tacaggtttt taattcaaat
     3121 tcagaagtta taaaatgtgt acagaatttt taaatgaaaa ttagtactaa cagctctatc
     3181 attgttattt atatatataa atacatatat atatataaaa tgttggatat aactggcagc
     3241 tctaatacac caagcagatg actggaaaag ctcaagacta aggtaagaaa agaacatttt
     3301 tgttgtttct aaaatgtctt ttcaccacaa gagggcacca gcttcccctt agcagggaac
     3361 tgtggtattg tacatgatag ttgtacatga aattaaggag agagtatatt ttaaatatat
     3421 tgtttttaac attaaatata aaattagggt aaattgactt ctctacttaa atgtatgacg
     3481 agaaagaaaa aaaatccact tgtaaaccga aaatgtatta cctcgtaggt acatggatta
     3541 tagtttgaaa gagacgtcat ttaaaaagaa gtgcaattca ttttgggcac gcatcaaaac
     3601 attgccatgt gttacaaaat ttgacctgct gaagagtgcg atgttttgtg taaccccacc
     3661 tgctttctgt ttgtttcccg ctgcacttgc tagaattaca gggggtgggc atcatctatg
     3721 tattcttcct tacataaaaa gtatctagtc gatgcactca gtaaaagagc aagacactcg
     3781 tcagtgtctc aatctctact tgcttgcttg gtgtttatta tatcttagtg cattctcaac
     3841 ttgtcagcag caactttccc cccgtgggtt taatgttagc ctgagtacac ttctgttcac
     3901 ctacactatg agaaaaataa aagttgtatt caaattcctc aaaaggctac tgtacaccat
     3961 tggttgtttg aggtaggcat ttttatatga aagtgatacc ttttgtggtt gttttggacc
     4021 atcggctaat gttctgactt ctttatttgg ttctggaata catccaaagt tttatttgta
     4081 agcccatctg cacattcctt tgataattta gtttttacca gctcttgtgc aatgaagaaa
     4141 actggcttgt cagtgatttc taacgcttcc ttctttgcat gagatggaaa ttttacttta
     4201 tgtacgaact gtagcgaagc tgtctgtata aacaagaaat gtgttagctt caaaatgggt
     4261 cactttactt atcatcatca tgtgtctgta ccataccaaa attgtttata tgtttgcaaa
     4321 ttaaaagtat atattttcat attttcttga ttatatttac cattttatat ttgaatatgg
     4381 gattgttctt tcactgaagt gcctgctatt ggtgtctgtg tgtttttagg attagtgaga
     4441 aatggtagta ttctgctatg ctaaagttta tattaaacta atccatgacc taattaagta
     4501 tttgggtaaa ttattaaggg tttgtaaatg gtagacatat gtagaagaga attcacttct
     4561 atgtttaagt tcctatgaaa acttacactc atgcatgtct attttcacac taactaatta
     4621 tagattttat atcaccataa cttccctcat actctagcaa cctccatgct tattgtgttt
     4681 cactaacttg caatatttta aggtaatcac acaccataaa gaaaaggctt aaacataaac
     4741 acaggatttc ttaggtttat attgattgct tgttcttgct ttcttcactt tgatactctg
     4801 gataaataag tatataaggt agcaggatct tagacaaaaa attcaatata ttttgaggaa
     4861 agttcctttt gtatgacagg cgcttgaact aagagactga tgagaccatt taagtccata
     4921 agctgttctt tcacaactct tacgtaacaa agaagaaaca caatttattt gcagtcctgt
     4981 ttggcttagt ttctttttaa aatagagaag ctacataaaa gacatgtagc agcattaata
     5041 aaaaacgtgt gctccacagg cttcatgact ttcagcgcga ttctaaacag aaaaaaaaaa
     5101 acattctatt cacttcacag tttgaacatg gctcatgtgt ttggggggat ggttattgaa
     5161 attcatttct tgcatgaga
//
