LOCUS       NM_001100524            4890 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus protocadherin 18 (Pcdh18), mRNA.
ACCESSION   NM_001100524 XM_001053200 XM_227117
VERSION     NM_001100524.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4890)
  AUTHORS   Homayouni,R., Rice,D.S. and Curran,T.
  TITLE     Disabled-1 interacts with a novel developmentally regulated
            protocadherin
  JOURNAL   Biochem Biophys Res Commun 289 (2), 539-547 (2001)
   PUBMED   11716507
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001100524.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168716.1, SRR26643429.7932.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676785 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2909              JAXUCZ010000002.1  135993918-135996826 c
            2910-2998           JAXUCZ010000002.1  135993000-135993088 c
            2999-3162           JAXUCZ010000002.1  135992746-135992909 c
            3163-4890           JAXUCZ010000002.1  135983144-135984871 c
FEATURES             Location/Qualifiers
     source          1..4890
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q26"
     gene            1..4890
                     /gene="Pcdh18"
                     /note="protocadherin 18"
                     /db_xref="GeneID:295027"
                     /db_xref="RGD:1305870"
     exon            1..2909
                     /gene="Pcdh18"
                     /inference="alignment:Splign:2.1.0"
     CDS             423..3830
                     /gene="Pcdh18"
                     /codon_start=1
                     /product="protocadherin-18 precursor"
                     /protein_id="NP_001093994.1"
                     /db_xref="GeneID:295027"
                     /db_xref="RGD:1305870"
                     /translation="MHQINTKMHFRFALSLLMAFFSHDVLGKNLKYRIYEEQRVGSVI
                     ARLSEDVADVLLKLPNPSAIRFRAMPRGNSPLLVVNENTGEISIGAKIDREQLCQKNL
                     NCSIEFDVLTLPTEHLQLFHIEVDVLDINDNSPQFSRPVIPIEISESAAVGTRIPLDS
                     AFDPDVGENSLHTYSLSANDYFNIEVRTRTDGAKYAELIVVKELDRELKASYELQLTA
                     SDMGVPQRSGSSILKISISDSNDNSPAFEQPSYTIQLLENSPVGTLLLDLNATDPDEG
                     VNGRIVYSFSSHVSPKIIETFRIDSERGHLTLFKPVDYEITKSYEIDVQAQDLGPNSI
                     PAHCKIIIKVVDVNDNKPEISINLMSPGKEEVSYVFEGDPIDTFVAIVRVQDKDSGLN
                     GEIICKLHGHGHFKLQKTYENNYLILTNATLDREKRSEYSLTVIAEDKGTPNLSSVRH
                     FTVQVNDINDNPPRFQRSQYEFVISENNSPGAYITTVTATDPDLGENGHVTYTILESF
                     VLGSSITTYVTIDPSNGAIYALRIFDHEEVSQITFVVEARDGGSQKQLSSNTTVVLTI
                     IDENDNVPVVVGPAMHNNTADISIPKGVESGFHVTRLRVVDRDSGANAEFTCSIVAGN
                     EENIFIIDPRSCDIHTNVSIDSISSTEWALSVIIQDKGNPPLHTKVLLRCMVFDYTES
                     VTSTAMTSVSHASLDVSMIIIISLGAICAVLLVIMVLFATRCNREKKDTRSYNCRVAE
                     STYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSPTLERGQMGSRQSHNS
                     HQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQLLSMLHQGQYQPRPSFRGNKYSR
                     SYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEGFSDLFLTDGRIPAA
                     MRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPAQPQQQHSHPGLDDDSQ
                     PAESGEKKKSFSTFGKDSPSDEDSGDSSTSSLLSEMNSVFQRLLPASLDTYSECSEVD
                     RSNSLERRKGPAQGKTGGYPQGVAAWAASTHFQNPTSSSGTPLGTHSSVQPSSKWLPA
                     MEEIPENYEEDDFDNVLNHLSDGKHELMDASELVAEINKLLQDVRQS"
     exon            2910..2998
                     /gene="Pcdh18"
                     /inference="alignment:Splign:2.1.0"
     exon            2999..3162
                     /gene="Pcdh18"
                     /inference="alignment:Splign:2.1.0"
     exon            3163..4890
                     /gene="Pcdh18"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagattttc agactggagt cagcaatcac gggtgtttag tctgcagcgg agcagagaaa
       61 aggaaagggg gaaaaaaaat caagaatcgc ccgggaaaga cacactgcag actcctccgg
      121 caccctgcaa tagatgggga cggagtccac gcagggaggc aggccgaggt gacacgctgc
      181 tcccagccag gaggaccggc agccacccgg actaggaggg gacttcaggc tcctgtctgg
      241 aagacgccaa acggtgtgta tgaaaactga agtttgcgag ctgttaattg ctgtgtgatt
      301 aagagtcgct ttcaagactc agagacccga tgtggctgag agctctgagt ggcggggagg
      361 aagttgaagg gattgctggg ctcttctaac tgtccctgag aagggaatct agcaactgac
      421 caatgcacca aataaatact aaaatgcact ttagattcgc actttcactt ctgatggcgt
      481 ttttcagcca cgatgtcctg ggtaagaatc tgaaatacag gatttatgag gagcagaggg
      541 tcggatcggt aattgctaga ctatcagaag atgtggctga tgttttactg aagctaccaa
      601 atccttctgc cattcgtttt cgagccatgc cacgggggaa ttctcctctc ctggtcgtaa
      661 atgagaatac cggagaaatc agcatagggg ctaaaatcga ccgcgagcaa ctatgccaaa
      721 agaacttgaa ctgttcgata gagtttgatg tgctcactct gccgaccgag catctgcagc
      781 tgttccatat tgaagtggac gtgttggaca ttaatgacaa ttcccctcaa ttctcgagac
      841 ccgtcattcc cattgagata tcggagagcg cagcagttgg gactcgcatc cctctggaca
      901 gtgcgttcga ccccgatgtt ggggaaaatt ccctccacac ctactcgctc tctgctaatg
      961 attattttaa tatcgaagtg cggaccagga cggacggggc caagtatgct gaactcatag
     1021 tggtgaaaga gttggatcgg gagctgaagg ctagctatga gctgcagctc acggcctctg
     1081 acatgggagt gcctcagagg tctgggtcct ccatcctgaa aataagcatt tcggattcca
     1141 acgacaacag cccggccttt gagcagccct cttacacaat acaactctta gaaaactccc
     1201 cagttggaac cttgctcctc gatctaaatg ccactgatcc tgatgagggc gttaatggga
     1261 gaattgtata ttctttcagc agccatgtgt ctcccaaaat tatagagact tttaggatcg
     1321 actcagaaag aggacacttg actcttttca agccggtgga ttatgaaatc accaagtcct
     1381 atgagataga tgttcaagcc caagatctgg gtcccaattc cattcctgct cattgcaaaa
     1441 ttataattaa ggtcgtggat gtcaatgaca ataagcctga aattagcata aacctcatgt
     1501 cccctggaaa agaagaagtg tcttatgttt ttgaagggga tcccattgat acatttgttg
     1561 ctatcgtcag ggttcaagac aaggattctg ggctgaatgg ggaaataatc tgtaagcttc
     1621 atgggcatgg gcactttaaa cttcagaaga cttatgaaaa caactactta atcttgacca
     1681 atgccactct ggatagagaa aagagatctg agtacagttt gactgtgatt gctgaggaca
     1741 agggaacacc caacctctct tcagtgagac attttactgt tcaagtcaat gacataaatg
     1801 acaatccacc tcgcttccag aggagccaat atgaatttgt catctcagag aataattcgc
     1861 caggggcgta catcaccaca gttacagcca ccgatccaga cctgggtgaa aatgggcatg
     1921 tgacatacac cattttggag agttttgtct tgggaagttc cattaccacg tatgtaacca
     1981 ttgatccatc caatggcgcc atctatgccc tcaggatctt tgatcatgag gaagtgagtc
     2041 agatcacttt tgtggtggaa gcaagggatg gagggagtca gaagcaactc tcaagcaaca
     2101 ccacagttgt gctgaccatc attgacgaga atgacaatgt ccctgtggtt gtagggcctg
     2161 caatgcacaa caacactgca gacatctcca tccccaaagg agtcgaaagt ggtttccatg
     2221 tcacaagact aagggtagtg gacagagact ctggtgcaaa tgctgaattc acctgctcca
     2281 tagtagctgg taatgaggaa aacatcttta tcatagatcc aaggtcatgt gacatccata
     2341 ccaacgtcag catagactcc atttcctcca ccgaatgggc actttcagtt atcatccagg
     2401 acaagggcaa tcctcctctg cacaccaaag tcctcctgag gtgcatggtc tttgactata
     2461 cagaatctgt gacaagcaca gccatgactt ctgtcagtca cgcatccttg gatgtgtcta
     2521 tgatcataat tatttcctta ggggcaatct gtgcagtgtt gctggttatt atggtactgt
     2581 tcgccacgag gtgcaataga gaaaagaaag acaccaggtc ctacaactgc agggtggcag
     2641 aatccactta ccagcatcat cccaaaaggc cgtccaggca gattcacaaa ggagacatta
     2701 cactggtgcc caccatcaat ggtactctgc ccatcagatc tcaccacaga tcctctccat
     2761 cttcatctcc aaccttggaa agggggcaga tgggcagccg ccagagtcac aacagtcacc
     2821 agtcactcaa cagtttggtg accatctcct caaaccacgt gccagagaat ttttcattag
     2881 aactcaccca tgccactcct gctgttgagc aggtctcaca gcttctctcc atgctccacc
     2941 aggggcaata tcagccacgg ccaagctttc gaggaaacaa atattccagg agctatagat
     3001 atgcccttca agacatggat aaatttagct tgaaagacag tggccgtgga gatagtgaag
     3061 caggagacag tgattatgat ttggggcgag attctccaat agacaggctc ctgggagaag
     3121 gattcagtga cctctttctc actgatggaa gaattccagc agccatgagg ctatgtacgg
     3181 aggaatgcag agtcctgggc cactctgacc agtgctggat gcctccactg ccctcgccat
     3241 cctcagacta cagaagcaac atgttcatcc ccggagaaga gttcccggct caacctcaac
     3301 aacagcattc tcatccgggc cttgatgatg acagtcagcc tgccgaatct ggggagaaaa
     3361 aaaagagctt ttccaccttt gggaaggatt cccctagcga cgaggactcc ggggactcta
     3421 gcacatcatc tctgctatca gaaatgaaca gtgtgttcca acgcctcctc cccgcatccc
     3481 tagataccta ttctgaatgc agcgaagtgg accggtccaa ctccctggaa cgtcgaaagg
     3541 gtccagcaca gggcaaaact gggggttacc cacaaggggt tgcagcctgg gcagccagca
     3601 cacattttca gaaccccacc agcagctctg ggacccctct ggggactcac tccagtgtgc
     3661 agccttcttc caagtggttg ccagctatgg aggagatccc tgaaaactac gaggaagatg
     3721 attttgacaa tgtgctgaac catcttagtg atgggaaaca cgaactcatg gatgccagcg
     3781 agctggtagc tgagatcaac aaactgcttc aagatgtccg ccagagctag aagactttag
     3841 ctgaaccgtt gtgtttccat gtgtgtggaa ttaggggaca gggaaaaccc cggaaaaaaa
     3901 ctggcgttgc caaatagttg catttatcat aaatgtgtct gtgtatattg aatattaaat
     3961 actgtatttt cgtatgtaca cgatgcaagt gtgattattt taatctgtat tttaaaaata
     4021 catttgtacc ttatatttat gtgtaattta acagacaaat tttatttttt tactcccatg
     4081 acaaacatgt ttttcctaat catacagaaa ttagccactg tttgaatctg tatccttttc
     4141 aaccaaagtt actgcttagc atagaagtag gggcagaatt attcagctgt atgaacaaca
     4201 ccactaacgc attatgtaat tcttagtttc attaaatgat gctccttcct tttcaatatt
     4261 tacaaaaaaa ttaagcattg ctagaaacat taaacaattt ttcaattact atttcactgc
     4321 tttctgttag ctatgataga taacttctta aggcaaaatg gaggaaggaa gtaaacttag
     4381 tttacaccta gaagcttcct gaggtgttca tgggaaggca atggcatgtg aattcttcat
     4441 agcaatgatg ttcgaatcag tgttgcctgg cagtggctcc cagactttca gtgtatcacg
     4501 ctggcttggt catgagagta ttttttccag tagcaaaata tctgcttata atgaaactaa
     4561 atggtgaatt tgatccttgc cctatgaaat acgatctaat gatgtgaaat ctgtgctcta
     4621 aatggataac attctgttat ctaccagcat ggagtgttta ttaacagtga tctccccctc
     4681 cggggtagta aacataattg atgtatctga aactttatgt gaatcgcccc cccttccttc
     4741 atcatacttg aacatttgaa tcgactgcat tgtctttttt tggctataat tattcacgtt
     4801 tagcttttgt ctcttgtgca tgctttcaca gttttgcttg tatttttagc atatgaacat
     4861 ttataaagtc actttctttt gttactgcaa
//
