LOCUS       NM_001107279            4661 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus protocadherin 17 (Pcdh17), mRNA.
ACCESSION   NM_001107279 XM_001073574 XM_224389
VERSION     NM_001107279.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4661)
  AUTHORS   Hoshina,N., Tanimura,A., Yamasaki,M., Inoue,T., Fukabori,R.,
            Kuroda,T., Yokoyama,K., Tezuka,T., Sagara,H., Hirano,S.,
            Kiyonari,H., Takada,M., Kobayashi,K., Watanabe,M., Kano,M.,
            Nakazawa,T. and Yamamoto,T.
  TITLE     Protocadherin 17 regulates presynaptic assembly in topographic
            corticobasal Ganglia circuits
  JOURNAL   Neuron 78 (5), 839-854 (2013)
   PUBMED   23684785
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473951.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_224389.4, XM_001073574.1.
FEATURES             Location/Qualifiers
     source          1..4661
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15q12"
     gene            1..4661
                     /gene="Pcdh17"
                     /note="protocadherin 17"
                     /db_xref="GeneID:306055"
                     /db_xref="RGD:1304753"
     exon            1..134
                     /gene="Pcdh17"
                     /inference="alignment:Splign:2.1.0"
     exon            135..2766
                     /gene="Pcdh17"
                     /inference="alignment:Splign:2.1.0"
     CDS             202..3828
                     /gene="Pcdh17"
                     /codon_start=1
                     /product="protocadherin-17"
                     /protein_id="NP_001100749.1"
                     /db_xref="GeneID:306055"
                     /db_xref="RGD:1304753"
                     /translation="MYLSICCCFLLWAPALTLKNLNYSVPEEQGAGTVIGNIGKDARL
                     QPGLPPAERGSGSGRSKSGSYRVLENSAPHLLDVDADSGLLYTKQRIDRESLCRHNAK
                     CQLSLEVFANDKEICMIKVEIQDINDNAPSFPSDQIEMDISENAAPGTRFPLTSAHDP
                     DAGENGLRTYLLTRDDHGLFALDVKSRGDGTKFPELVIQKALDRELQNHHTLVLTALD
                     GGEPPRSATVQINVKVIDSNDNSPVFEAPSYLVELPENAPLGTVVIDLNATDADEGPN
                     GEVLYSFSSYVPDRVRELFSIDPKTGLIRVKGNLDYEENGMLEIDVQARDLGPNPIPA
                     HCKVTVKLIDRNDNAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSGKNGQLQCRV
                     LGGGGTGGGGGLGGPGSVPFKLEENYDNFYTVVTDRPLDRETQDEYNVTIVARDGGSP
                     PLNSTKSFAVKILDENDNPPRFTKGLYVLQVHENNIPGEYLGSVLAQDPDLGQNGTVS
                     YSILPSHIGDVSIYTYVSVNPTNGAIYALRSFNYEQTKAFEFKVLAKDSGAPAHLESN
                     ATVRVTVLDVNDNAPVIVLPTLQNDTAELQVPRNAGLGYLVSTVRALDSDFGESGRLT
                     YEIVDGNDDHLFEIDPSSGEIRTLHPFWEDVTPVVELVVKVTDHGKPTLSAVAKLIIR
                     SVSGSLPEGVPRVNGEQHHWDMSLPLIVTLSTISIILLAAMITIAVKCKRENKEIRTY
                     NCRIAEYSHPQLGGGKGKKKKINKNDIMLVQSEVEERNAMNVMNVVSSPSLATSPMYF
                     DYQTRLPLSSPRSEVMYLKPASNNLTVPQGHAGCHSSFTGQGTNSSETPATRMSIIQT
                     DNFPAEPNYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSV
                     REALKMKTTSTKSQPLEQEPEECINCTDECRVLGHSDRCWMPQFPAANQAENADYRTN
                     LFVPTVEANVETETYETVNPTGKKTFCTFGKDKREHTILIANVKPYLKAKRALSPLLQ
                     EVPSASSSPTKACIEPCASTKGSLDGCEAKAGALAEASSSYLPTDSQYPSPSKQPRDP
                     SFMASEQMARVFADVHSRASRDSSEMGAVLEQLDHPNRDLGRESVDAEEVVREIDKLL
                     QDCRGNDPVAVRKNNNGFDQTYIRTELMKLKEKGEKKEREREREEIGEKKKEDETSYL
                     LTIC"
     exon            2767..2825
                     /gene="Pcdh17"
                     /inference="alignment:Splign:2.1.0"
     exon            2826..2998
                     /gene="Pcdh17"
                     /inference="alignment:Splign:2.1.0"
     exon            2999..3677
                     /gene="Pcdh17"
                     /inference="alignment:Splign:2.1.0"
     exon            3678..4661
                     /gene="Pcdh17"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagtcgccg cctttgctcg gagctgctgc agcttcgcag cgcggcttca tctctctctg
       61 tgcgaatgct gtagatcaac aggttcgggc aacttgagcg gaataaggag agactgcctg
      121 gtgccgcagc ccggactggc gcgcacccac cagctagcac ctccagtccg gctgctccgg
      181 ttcccacccc aacggtctgg gatgtacctt tccatctgtt gctgctttct tttgtgggcc
      241 cctgccctga cactcaaaaa cctcaactat tcagtaccag aggagcaagg ggccggcacg
      301 gtgataggca acatcggcaa ggatgcccga ctgcagcccg ggcttccgcc cgctgagcgc
      361 ggcagcggca gcgggaggag caagtccggc agctaccggg tgctggagaa ctccgcacca
      421 catctgctgg acgtggatgc tgacagcggg ctcctctaca ccaaacagcg aatcgaccgt
      481 gagtccttat gccgccacaa tgccaagtgc cagctctccc tagaggtgtt cgctaacgac
      541 aaggagattt gcatgatcaa ggtagagatc caggacatca acgacaacgc tccctctttt
      601 ccctcagatc agatagaaat ggacatctcc gagaacgcgg cacccggcac ccgcttcccc
      661 cttacgagcg ctcacgaccc agacgctggc gagaacgggc tccgcaccta tctgctcacc
      721 cgcgatgatc atggcctctt tgcactggac gtcaagtccc gcggcgacgg caccaagttc
      781 ccagagctag tcatccaaaa ggcgttggac cgcgagctgc agaaccacca cactctggtg
      841 ctgacagccc tggatggcgg ggagcctcca cgctccgcta cggtgcagat caatgtgaag
      901 gtgatcgatt ccaatgacaa cagtccagtc ttcgaggctc catcgtactt ggtggaactg
      961 cccgagaacg ctccactggg tacggtggtc attgatctga acgccaccga tgctgatgaa
     1021 ggacccaacg gagaagtcct ctactccttt agtagctatg tgcctgaccg cgtgcgggag
     1081 ctcttctcca tcgatcctaa aactggcctg atccgcgtta agggcaacct ggactatgag
     1141 gagaacggca tgttagagat cgacgtgcag gccagagacc taggacctaa cccaattcca
     1201 gcccattgca aggtcacagt caagctcatc gaccgcaacg ataacgcgcc gtccattggt
     1261 ttcgtctccg tgcgccaggg ggcgctgagt gaggccgccc cgcctggcac agtcatcgcc
     1321 ctagttcggg tcactgaccg agactcaggc aagaatgggc agcttcagtg tcgagttcta
     1381 ggtggaggag ggactggggg tggaggtggc ctgggaggtc ctggttccgt ccccttcaag
     1441 ctggaagaaa actatgacaa cttctacacc gtggtgactg accgtccgct ggaccgtgag
     1501 acacaagacg agtacaatgt gacaatagtg gcccgggacg gcggctcccc tccactcaac
     1561 tccaccaagt ccttcgctgt caagattctg gatgagaatg acaacccgcc tcgtttcacc
     1621 aaaggactgt acgtgctcca agtacatgag aacaatattc caggagaata cctcgggtca
     1681 gtgctcgccc aggatcccga cctaggccaa aatgggacag tgtcatactc cattctcccc
     1741 tcacacatcg gtgacgtgtc catctacacc tatgtgtccg tgaaccccac taacggggcc
     1801 atatatgccc tgcgctcctt taactatgaa cagacgaagg cttttgaatt caaggtgctg
     1861 gctaaggact cgggggcgcc cgcgcatttg gagagcaacg ccacggtgag ggtgacagtg
     1921 ttagacgtga atgacaacgc tccagtgatt gtgcttccca ctctacagaa cgacaccgct
     1981 gaactgcagg tcccgcgcaa tgctggcctg gggtacctgg taagcacagt tcgagccctg
     2041 gacagcgact ttggagagag cgggcgcctc acctatgaga ttgtggatgg caatgatgac
     2101 cacctgtttg agatcgatcc gtccagcggc gagatccgca cgctgcaccc cttctgggag
     2161 gatgtgaccc cggtggtgga gcttgtggtg aaggtgaccg atcatggcaa gcccaccctg
     2221 tccgccgtgg ccaaacttat cattcgctcc gtgagtggtt ccctgcctga aggggtaccg
     2281 cgagtgaatg gtgagcagca tcactgggac atgtcgctgc ctctcatagt gacactaagc
     2341 acgatttcga tcatcctcct agcggccatg atcaccatcg ctgtcaaatg taaacgggaa
     2401 aacaaggaga ttcgcactta caactgccgc atcgccgagt acagccaccc acaactaggc
     2461 ggggggaagg gcaagaagaa gaaaatcaac aaaaacgata tcatgctggt gcagagcgag
     2521 gtggaagaga ggaacgccat gaacgtcatg aacgtggtga gcagtccctc cctggccacc
     2581 tcccctatgt acttcgacta ccaaacccgc ctgcccctca gctcgccccg gtcagaggtg
     2641 atgtatctta agccagcctc caacaacctg actgtcccgc aggggcacgc aggctgccac
     2701 agcagcttca ccggacaagg gaccaattcg agcgagaccc ctgccactcg gatgtccata
     2761 attcagacag acaattttcc cgcagagccc aattacatgg gcagcaggca gcagtttgtt
     2821 caaagtagct ccacgtttaa agacccagaa agagccagcc tgagagacag tgggcacggg
     2881 gacagcgatc aggcggacag tgaccaagac actaacaaag gctcctgctg tgacatgtct
     2941 gttagggagg cactcaagat gaaaactact tcaactaaaa gtcaaccact tgaacaagaa
     3001 ccggaagagt gtattaattg cacagatgaa tgccgagtgc ttggtcattc tgatagatgt
     3061 tggatgccac agttccctgc agccaatcag gctgaaaatg cagattaccg cacaaatctc
     3121 tttgtaccca cagttgaagc taacgttgag actgagactt acgaaactgt gaatcccact
     3181 gggaaaaaga ctttttgtac atttggaaaa gacaagcgag agcacactat tctcattgcc
     3241 aatgtgaaac cttatttaaa agccaaacgt gccctgagcc ctctcctcca agaggtcccc
     3301 tcagcatcta gcagcccaac caaggcatgc attgagcctt gcgcctcaac aaaaggctcc
     3361 ctggatggct gtgaagcaaa agcaggggcc ttagcagaag caagcagctc ctacctgccc
     3421 actgacagtc agtatccgtc acccagtaag caaccaagag acccttcctt catggcttct
     3481 gagcagatgg caagggtctt tgcggatgtg cactccagag ctagtaggga ttccagcgag
     3541 atgggagctg tgctggaaca gttggatcac cccaacagag atctgggcag agagtccgtg
     3601 gatgcggagg aagttgtgag agagattgat aagctcttgc aggactgccg gggaaatgac
     3661 cctgtggctg tgagaaaaaa taacaatggt tttgaccaaa cttatattag gacagaatta
     3721 atgaagctta aggagaaagg agaaaagaaa gagagagaga gagagagaga agaaattgga
     3781 gagaagaaaa aggaggatga gacaagttac cttttgacaa tctgttagga aggtatgcag
     3841 tgagagacgg aaggtatttc tgatcactct aagactgtcc tcccacgaga tcgatgctga
     3901 cttaactgtt tacctataaa cccatacaaa gcagggtcat atttgttatc tgtggtggac
     3961 tactagctga catcacaggc ttctactgaa agtcccgaaa agaccttgca gtagtccaag
     4021 ctacaccaaa cattaacaca tatttgtggt aaacatttct gtataaagta cctgccaagc
     4081 atagaaacac aaagaccatt ccataccatt agtcagaagc aaaagaaaaa aaatgtaata
     4141 ataacaaaac agaaaaaaag ataaaacaac aaaaaccctt ggtcattgta agacacctca
     4201 tgtcatataa aagttcaatg taaaaagata tagtctgtgt tgtcctgaaa cacatgtaga
     4261 cctattcact tcattaaaga agaaaatttt gaaaaattta aaatgtctat ttagcatttt
     4321 agtgtccaac aaatatataa ataacagtga gtttgttttg catttgaaca gttctgaatt
     4381 atgagttatc attgagtagt aatactgaga gaaaattaac ataactaaaa tgttttactc
     4441 atttttggac actaaaatag ctcaggaaag tgaaaaaaat gtcttagaca taacaaatca
     4501 catgaccatt taaatgtgca gatgtaagaa gattcaatgt gtttacatca aatgacatat
     4561 ttttattgat ttattgcaga ttccgtgcat atgagccaaa ttgttgagtg tataagagct
     4621 atattgtgta ttttattaaa ttaatatata gttgtgttgc a
//
