LOCUS       NM_001271228            4385 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus protocadherin 11 X-linked (Pcdh11x), mRNA.
ACCESSION   NM_001271228 XM_001055860 XM_228479
VERSION     NM_001271228.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4385)
  AUTHORS   Hendrickx,A., Beullens,M., Ceulemans,H., Den Abt,T., Van Eynde,A.,
            Nicolaescu,E., Lesage,B. and Bollen,M.
  TITLE     Docking motif-guided mapping of the interactome of protein
            phosphatase-1
  JOURNAL   Chem Biol 16 (4), 365-371 (2009)
   PUBMED   19389623
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On or before Sep 9, 2012 this sequence version replaced
            XM_001055860.1, XM_228479.6.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1989751.1,
                                           SRR26360176.154631.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-324               JAXUCZ010000021.1  90279235-90279558
            325-908             JAXUCZ010000021.1  90338560-90339143
            909-3404            JAXUCZ010000021.1  90369837-90372332
            3405-3485           JAXUCZ010000021.1  90576826-90576906
            3486-3515           JAXUCZ010000021.1  90644350-90644379
            3516-3714           JAXUCZ010000021.1  90761018-90761216
            3715-3738           JAXUCZ010000021.1  90868761-90868784
            3739-4385           JAXUCZ010000021.1  90969746-90970392
FEATURES             Location/Qualifiers
     source          1..4385
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq31"
     gene            1..4385
                     /gene="Pcdh11x"
                     /gene_synonym="RGD1562864"
                     /note="protocadherin 11 X-linked"
                     /db_xref="GeneID:317204"
                     /db_xref="RGD:1562864"
     exon            1..324
                     /gene="Pcdh11x"
                     /gene_synonym="RGD1562864"
                     /inference="alignment:Splign:2.1.0"
     exon            325..908
                     /gene="Pcdh11x"
                     /gene_synonym="RGD1562864"
                     /inference="alignment:Splign:2.1.0"
     CDS             369..4385
                     /gene="Pcdh11x"
                     /gene_synonym="RGD1562864"
                     /note="protocadherin-11 X-linked-like"
                     /codon_start=1
                     /product="protocadherin-11 X-linked precursor"
                     /protein_id="NP_001258157.1"
                     /db_xref="GeneID:317204"
                     /db_xref="RGD:1562864"
                     /translation="MDLLSGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLL
                     KDLNLSLIPDKSLTTPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGIVL
                     DARCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFPTTVINISIPENSAINSRYSL
                     PAAIDPDIGINGVQNYQLIKSQNVFGLDVVETPEGEKMPQLIVQKELDREEKDTYVMK
                     VKVEDGGFPQRSSTAILQVSVADTNDNRPIFIEKEIEVSIPENAPIGSSVTQLHATDA
                     DIGENARIHFYFSNLVSNNAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGGS
                     TPAKAMVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVTDKDSEH
                     NGRVTCFTDHEVPFRLRPVFSNQFLLETAAFLDFESTREYAIKLLAADAGKPPLNQSS
                     MLLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGRNAEINYLLGFD
                     APPEFNLDRRTGILTAVKKLDREKQEKYYFTVLAQDNGIPPLMSNATVFVTVLDQNDN
                     SPIFTHNEYNFYVPENLPKHGTVGLITVTDPDYGENSAVTLSVLDVNDQFTIDPQSGV
                     IRPNISFDREKQESYTFYVKAEDGGRVSRSSTAKVTINVVDVNDNKPIFIDPPSNYSF
                     EWVLPSTDPGTVIFKVLAIDNDTGMNAELRYSIVGGNTKGLFMIEQISGNITLKEKCM
                     VSDIGLHRVIVKAKDLGQPDSLFNVVNVNLFVNESVPNTTLIYEMVRKSIDSPANQNS
                     ETTSASSPTTDYVKIMVAIVAGTITVVLVIFITAVVRCRQSPHLKASQKNKQNSEWVT
                     PNPENRQMIMMKKKKKKKKKHPPKNLLLNFVSIEEAKPDDADNERNSVTLDLPIELED
                     QTMGKYNWGTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNT
                     FVGCDSISKCSSSSSDPYSVSECSYPVTTFKTPVSVHTRPPMKEVVRSHTPMKEATTV
                     EIWTHPHPQRRSDGKKAGKSQRRVTFHLPEGSQESISDGGLGDHDPGSLPSTSHALPL
                     GYPQEEYFDHAAPNNRTEGDGNSDPESTFIPGLKKAAEITVQPTVEEASDTCTQECLI
                     LGHSDSCWMPASLTNPTPSQIKTSAICHSPPRTHSSVRRCSPPVTQTVAICHSPPVTQ
                     AIALCHSPPPVQATVLRHSSPPAQASAVCYSPTLVQAVVIHRSPPLPQAATLRHTQAQ
                     PPMGLQQGWVQGAGADGTHPIDQGVQGSTRAQFYTMAERLHPDDDSIKVIPLTTFTSG
                     KQARASRGDSPIMEEHPL"
     exon            909..3404
                     /gene="Pcdh11x"
                     /gene_synonym="RGD1562864"
                     /inference="alignment:Splign:2.1.0"
     exon            3405..3485
                     /gene="Pcdh11x"
                     /gene_synonym="RGD1562864"
                     /inference="alignment:Splign:2.1.0"
     exon            3486..3515
                     /gene="Pcdh11x"
                     /gene_synonym="RGD1562864"
                     /inference="alignment:Splign:2.1.0"
     exon            3516..3714
                     /gene="Pcdh11x"
                     /gene_synonym="RGD1562864"
                     /inference="alignment:Splign:2.1.0"
     exon            3715..3738
                     /gene="Pcdh11x"
                     /gene_synonym="RGD1562864"
                     /inference="alignment:Splign:2.1.0"
     exon            3739..4385
                     /gene="Pcdh11x"
                     /gene_synonym="RGD1562864"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagtcgacg aactgtcagg gcgggagtag ctgtgagccg gagcagccag cagcggcccg
       61 cgcagcaaag cggaaagcca ggctaccaca gtgcaaggag tcgcggaggc agaagctact
      121 caggcgacac aggcagccct gctagcccgg gccgccagac cagcctcaca accaacctcc
      181 aagacaaaca gctgctccgc ggactgcgag ctgtggcggt agatcccgct acagcaatcg
      241 cagtctctgt ggagcgggcg gaagcctttt ttctcctttt tcgtcccccc tcttcattct
      301 actcaagagg agtctaaaca gtagtatatc gtgggctgac aaacagtacc tttggtatcg
      361 agactggtat ggacttgttg tccgggacgt atatatttgc ggtcctgtta gcatgcgtcg
      421 tgtttcagtc tggcgcccag gagaagaatt atacagtccg agaagaaatg ccagaaaacg
      481 tcctgatagg cgacttgttg aaagacctca acttgtcgct tattcccgac aagtccttaa
      541 ccacgcctat gcaattcaaa ttagtttaca aaaccgggga tgtaccattg attcggattg
      601 aagagggtac tggcgagatc ttcactactg gcgcacgcat tgatcgtgag aaattatgtg
      661 ctggaatcgt gttggatgct cgttgctttt acgaagtgga ggttgctgtt ttgccggatg
      721 aaatatttag attggttaag atacgctttc tgatagaaga cataaatgat aatgcaccgt
      781 tattcccgac aactgtcatc aacatatcaa ttccagaaaa ctcggctata aactctcgat
      841 attctcttcc ggcagccatt gatcctgaca ttggaataaa tggagtccaa aattaccaac
      901 taattaagag tcaaaatgtt ttcggtcttg atgtcgttga aacaccagaa ggagaaaaga
      961 tgccccagct gatcgttcaa aaggaattag atagagaaga aaaggatacc tatgtgatga
     1021 aagtaaaagt tgaagatggt ggctttcctc aaagatccag tacagctatt ttgcaagtaa
     1081 gtgttgctga tacaaacgac aaccgcccaa tcttcataga gaaggaaatt gaagtcagta
     1141 taccagaaaa tgctcctata ggttcttcag tgacacaact ccatgccaca gatgctgata
     1201 taggtgaaaa cgccagaatt cacttttatt tcagcaatct agtctccaat aacgctaaga
     1261 gactgtttca tcttaacacc actaccgggc ttatcactgt caaagaacca ctggataggg
     1321 aagaatcacc aagccacaag ttattggttt tggcaactga tggtggatcg acaccagcaa
     1381 aagcaatggt gctggtaaat gttacagata tcaatgataa tgtaccatca attgacataa
     1441 gatacatcgt caatccaacc aatggcactg tgctcctttc agagaatgct ccgcttaaca
     1501 ctaaaattgc tctcataact gtgacggata aggattctga acataatggt agggtgacat
     1561 gcttcacaga tcatgaagtt cctttcagat tacgtccagt attcagtaat cagtttctct
     1621 tggagacagc tgcatttctt gactttgagt ccaccagaga atatgccatt aaattactgg
     1681 ccgctgatgc tggcaaacct cctttgaatc agtcatccat gctcctgatc aaagtaaaag
     1741 atgaaaatga caatgctccg gttttcaccc aatctttcat aagcctttcc gttcctgaga
     1801 ataactctcc tggtgcacag ttgacaaaaa tcagtgcaac agatgcagac agtggacgca
     1861 atgctgaaat aaactacctg ctaggttttg atgcaccacc tgaattcaac ctggatcgtc
     1921 gtacaggcat cctgactgca gtgaagaaac tagatagaga aaaacaggaa aagtattact
     1981 ttacagtcct ggcacaggac aatggaattc cacccttaat gtccaatgcc actgtgttcg
     2041 tgactgttct tgaccagaat gataacagcc caattttcac tcataatgaa tataacttct
     2101 atgttcctga aaaccttcca aaacatggca cagtagggct aataactgtg actgatcctg
     2161 attatgggga gaattctgca gttactctct ctgtcttaga tgtaaacgat caattcacta
     2221 ttgatccaca gtctggtgtc atcaggccaa atatttcatt tgacagagaa aaacaagaat
     2281 cctatacttt ctatgtaaaa gctgaggatg gtggtagggt atcacgttct tcaactgcta
     2341 aagtaaccat aaatgtggtt gacgtaaatg ataacaaacc aatttttatt gaccctcctt
     2401 ccaattactc ctttgaatgg gttctaccat ccacagatcc tggcacagtc atcttcaagg
     2461 ttcttgcaat tgacaatgat actggcatga atgcagagct tcgttacagc attgttggag
     2521 gaaacacaaa aggactgttt atgattgaac aaatatcagg caacatcaca ttgaaggaga
     2581 agtgcatggt ttcagatatt ggtttacatc gagtcatagt caaggctaaa gatttaggac
     2641 aacctgattc tctcttcaat gttgtaaatg tcaatctctt tgtaaatgag tctgtgccca
     2701 atactaccct gatttatgaa atggtgcgca aaagcattga ctcacctgca aatcaaaatt
     2761 ctgaaacaac aagtgcatcc tcaccaacca ccgactatgt caagatcatg gttgccattg
     2821 ttgctggcac cataactgtt gtcctagtta ttttcatcac tgctgtagta agatgccgcc
     2881 aatcaccaca ccttaaggct tctcagaaaa acaaacagaa ttctgagtgg gttactccaa
     2941 acccagaaaa cagacagatg atcatgatga agaagaagaa gaagaaaaag aagaagcatc
     3001 cccccaagaa cctgctgctt aattttgtta gtattgaaga agcaaagcca gatgatgctg
     3061 acaatgagag aaacagtgtt acactagatc ttcctattga gctggaggat caaaccatgg
     3121 gcaaatacaa ctggggcact acacctacta ccttcaagcc cgatagccct gatttggctc
     3181 gacactacaa atctgcctct ccccagcctg cattccagat ccagcctgaa acacccctaa
     3241 actcaaagca ccacatcatt caggagcttc ctcttgataa taccttcgtt gggtgtgatt
     3301 ccatctccaa gtgctcctcc agcagttctg atccctacag tgtttctgag tgcagctatc
     3361 cagtgacaac tttcaagact cctgtgtctg tgcataccag acctccaatg aaggaagtcg
     3421 tacgatctca cacacctatg aaagaggcaa caactgtgga aatctggact catccgcacc
     3481 cacagcggag atctgatgga aaaaaggcag gaaagtccca gagacgtgtt acatttcacc
     3541 taccagaagg ctctcaggaa agcatcagtg atggtggatt gggagaccat gatccaggca
     3601 gccttcccag tacatcccat gcactgccac ttggctatcc acaggaagag tattttgatc
     3661 atgctgcacc aaacaaccgc actgaagggg atggcaactc tgatcctgaa tctactttca
     3721 ttcctggact aaagaaagct gcagaaataa cagtgcagcc aactgtggaa gaagcctctg
     3781 acacctgcac tcaagaatgc ctcatcctgg gccactctga ctcctgctgg atgccagctt
     3841 cgctgaccaa tcctactcct tcacagataa agacttctgc tatctgccac agtccaccca
     3901 ggacccattc atcagttcgt cgctgcagcc ctccagtgac acagactgtt gctatctgcc
     3961 acagtcctcc tgtgacccag gctattgccc tgtgccacag ccctccacca gtacaggcta
     4021 ccgtactccg tcatagctca ccaccagcac aggcctctgc agtctgctac agcccaactc
     4081 tggtacaggc tgtggtaatt caccgcagtc ctcctctgcc acaggctgcc acactccgtc
     4141 acactcaggc acaaccacca atgggtttac agcaaggatg ggtgcagggt gcaggagcag
     4201 atggaacaca tcctattgat cagggagtac agggtagtac gagagctcag ttttacacca
     4261 tggctgaaag acttcatcca gatgatgact caattaaagt cattcctttg accaccttta
     4321 cttcaggtaa acaggccaga gcctcaagag gtgattctcc catcatggag gaacatccct
     4381 tgtaa
//
