LOCUS       NM_001100976            3000 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus PBX homeobox interacting protein 1 (Pbxip1),
            mRNA.
ACCESSION   NM_001100976 XM_001073314 XM_227420
VERSION     NM_001100976.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3000)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3000)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC129100.1.
            
            On or before Aug 12, 2007 this sequence version replaced
            XM_227420.4, XM_001073314.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC129100.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3000
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..3000
                     /gene="Pbxip1"
                     /note="PBX homeobox interacting protein 1"
                     /db_xref="GeneID:310644"
                     /db_xref="RGD:1305180"
     exon            1..86
                     /gene="Pbxip1"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..2204
                     /gene="Pbxip1"
                     /note="hematopoietic PBX-interacting protein; pre-B-cell
                     leukemia homeobox interacting protein 1"
                     /codon_start=1
                     /product="pre-B-cell leukemia transcription
                     factor-interacting protein 1"
                     /protein_id="NP_001094446.1"
                     /db_xref="GeneID:310644"
                     /db_xref="RGD:1305180"
                     /translation="MASCPDSDNSWVLAGSETLPVETLGPESRVDPESEEAPQALQDS
                     SKADGKESAGTLNGEEMLFQTESSQGEGAALPEESEAKGALGGDDGHGTKRPGDTAVQ
                     EDLQETPMVTSLGPDTQDLERNIHPQNLPSSPRAVWKEHGCSSSDDDTDVDVEGLRRR
                     RGREPSPPQPTAAVDGEDQAKGEGIGELGISLNMCFLGALVLLGLGILLFSGALLEPE
                     TEPVEEAELQVFPETELVQTVGNRQDEVEQLQASVPPDSVPSLQSMGLLLDKLAKENQ
                     DIRLLQAQLQAQKEELQSLLHQPKGLEEENARLREALQQGKTSHQALESELQQLRARL
                     QGLEANCVRGVDGVCLNWGGSPQGGKATTEQGHKGQEPDTSLLEQHKQLEAEAKALRQ
                     ELQKQWQLLGSVHRNLQRGLQDAGQGAPAHAGLAELGHMLAQTLQGLESQGINTGRSS
                     NDSEAWHQKKPRFQHPREWSGREKWRGGQRDQKAEHWKLKKEESGQDRKKSWRDEGRE
                     FTGHWKENRPRAEESGSRKDSKRQDPKVHPRKSGNSHSGERQKHSWGKDNSPDSVSWE
                     ELLRRKYRPPQGCSGVADCARQEGLALFGVELAPVRQQELASVLREYLARLPWAGQLT
                     KELPLSPAYFGEDGIFRHDRLRFRDFVDALEDSLEEVALKQTGDDDEVDDFEDFIFSH
                     FFGDKALKRRSKKKEKQPWNHRAVGPREEHSRHPHHYHQG"
     exon            87..213
                     /gene="Pbxip1"
                     /inference="alignment:Splign:2.1.0"
     exon            214..281
                     /gene="Pbxip1"
                     /inference="alignment:Splign:2.1.0"
     exon            282..444
                     /gene="Pbxip1"
                     /inference="alignment:Splign:2.1.0"
     exon            445..669
                     /gene="Pbxip1"
                     /inference="alignment:Splign:2.1.0"
     exon            670..693
                     /gene="Pbxip1"
                     /inference="alignment:Splign:2.1.0"
     exon            694..764
                     /gene="Pbxip1"
                     /inference="alignment:Splign:2.1.0"
     exon            765..893
                     /gene="Pbxip1"
                     /inference="alignment:Splign:2.1.0"
     exon            894..2110
                     /gene="Pbxip1"
                     /inference="alignment:Splign:2.1.0"
     exon            2111..2977
                     /gene="Pbxip1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggccact ctagctgcac tggacctcca caactatggc ctcctgcccg gactcagata
       61 atagctgggt gcttgctggc tctgagactc tccctgtaga gactctgggc cccgagtcca
      121 gggtggaccc agaatcagaa gaagcccccc aggcccttca ggactcctcc aaggcagatg
      181 gcaaagaatc agctgggacc ttgaatggag aagagatgct tttccagacg gaaagttccc
      241 agggcgaagg tgctgcgctg ccagaagagt ctgaggccaa gggtgctctg ggtggtgatg
      301 acggtcatgg gacgaagcgc ccaggagaca cagcggtcca ggaagatttg caggagactc
      361 ctatggtgac aagccttgga ccagacacac aggacctgga gagaaatatc cacccacaga
      421 acctgccctc aagtcccaga gcagtttgga aagagcatgg ctgctctagc agtgatgatg
      481 acactgatgt agatgtggag ggtcttcgga gacggagggg ccgagagcct agcccacccc
      541 agcccacggc agctgtggat ggagaggacc aggccaaggg cgagggtata ggagagctgg
      601 gcatctctct caacatgtgt ttcctggggg ccctggttct tctgggcctg gggatcctcc
      661 tgttctctgg cgcactgctg gagcccgaga ctgagcccgt ggaggaagcc gaattgcagg
      721 tctttccaga gactgagctg gtacagaccg tggggaacag gcaggatgag gtagagcagc
      781 tgcaggcctc agtaccacct gacagtgtcc ccagcctgca gagcatgggg cttctgctgg
      841 acaagctggc caaggagaac caggatatcc ggctgttgca ggctcagctg caggctcaga
      901 aagaagagct tcagagcctg ttgcaccagc ccaaagggct ggaagaggag aatgcccggc
      961 tccgggaagc cctgcagcag ggcaagacct cccaccaggc cctagagtca gaactgcagc
     1021 agctaagggc ccgactccaa gggcttgagg ctaactgtgt ccggggtgtg gatggggtgt
     1081 gtctcaactg gggtggaagt ccacagggtg gcaaggccac tacagaacaa ggccacaagg
     1141 ggcaggaacc agacaccagc ttattggagc agcataagca gcttgaggcc gaggccaagg
     1201 ccctaaggca ggagctgcag aaacagtggc agctgttggg ctctgtgcac cgcaacctgc
     1261 agaggggctt gcaggatgcc ggccaaggag ccccagctca cgctggcctg gctgaacttg
     1321 gtcacatgct ggctcagaca ctgcagggcc tagagagtca gggtattaac actggcagat
     1381 cttccaatga ctccgaggcc tggcaccaga agaagcctcg cttccagcat cccagggagt
     1441 ggagtgggag ggagaagtgg cgtggggggc agagggatca gaaggctgag cactggaagc
     1501 tgaagaagga ggaatctggc caggacagga agaagagctg gagggatgag ggcagggaat
     1561 tcacggggca ctggaaggag aacaggccga gggcggaaga atcggggagc agaaaggaca
     1621 gcaagcgaca ggaccccaag gtacacccta ggaaaagtgg gaactcccac tctggggaaa
     1681 ggcagaagca ttcttggggg aaagacaaca gccctgactc tgtgtcctgg gaggagctgc
     1741 taaggcgcaa gtaccggccc cctcagggct gttcaggcgt ggccgactgt gcccggcagg
     1801 agggcctggc cctctttggt gtggagctgg cccctgtgcg gcagcaggag ctggcctctg
     1861 tgctgaggga atacttggct cggctgccct gggccggaca gctaaccaaa gagctgcccc
     1921 tctcacctgc ttactttgga gaagatggca tcttcaggca tgaccgcctt cgcttcaggg
     1981 attttgtgga tgccctggag gacagcctgg aggaggtggc actgaaacaa acgggtgacg
     2041 atgatgaagt ggatgacttt gaggacttca tcttcagcca cttctttgga gacaaggcac
     2101 tgaagaggag gtcaaagaag aaggagaagc agccttggaa ccacagagct gtggggccca
     2161 gggaagagca cagccgccat ccccaccact accaccaagg ctgagccctg cttctgctgc
     2221 aaccaccggc cttggcatgc acccagctaa agatccctgg aattatgtga cccatgctca
     2281 cactgtccag tgggttcctc ctggctcgtt agtgcccttg gacgtccttc acagaagaga
     2341 gcaaagcact cggccctgca ctggtaccac ttttgcttaa aaaaggccgt agttgacact
     2401 actgaactgt ttaaacaaat gtatgcaaat gataaaggcc ctgggtacta agcatcctgt
     2461 aggagcctgc tggggaggac tcttattctg aagccagaga gctgtccttt cttgtggcta
     2521 tcctgggtcc acagcacagc ttaccaccac cctgcactgg agctactggt tggagactta
     2581 gctccggact tgccttgggg gtttttgtta gctttggaga cagctgtcgc taagcctgag
     2641 gagcccacac catgcctctt gtggctttca cctccccacc tgaactgtac accatgatag
     2701 ggctctgtca cttgaggtgg tctctaagtg caaggggaca ccttgcagcc accactccag
     2761 tgtttgggca caatctagac actgcactca acccttttgc ctttctgccc tcagccttcc
     2821 cgtctgttcc ccatgttctt tcccaaggaa tctagccttg agtccagcca ccaattgtct
     2881 cacaatacac agtgtggtat tcttatcttc tgaaagaggg ctgaagggct gagaatggag
     2941 tcaataaagc aaggaagcaa acatcctgtt tctgccaaaa aaaaaaaaaa aaaaaaaaaa
//
