LOCUS       NM_001108399            1384 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus PBX homeobox 4 (Pbx4), mRNA.
ACCESSION   NM_001108399 XM_001069955 XM_341418
VERSION     NM_001108399.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1384)
  AUTHORS   Yoshioka H, Geyer CB, Hornecker JL, Patel KT and McCarrey JR.
  TITLE     In vivo analysis of developmentally and evolutionarily dynamic
            protein-DNA interactions regulating transcription of the Pgk2 gene
            during mammalian spermatogenesis
  JOURNAL   Mol Cell Biol 27 (22), 7871-7885 (2007)
   PUBMED   17875925
REFERENCE   2  (bases 1 to 1384)
  AUTHORS   Wagner K, Mincheva A, Korn B, Lichter P and Popperl H.
  TITLE     Pbx4, a new Pbx family member on mouse chromosome 8, is expressed
            during spermatogenesis
  JOURNAL   Mech Dev 103 (1-2), 127-131 (2001)
   PUBMED   11335119
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474031.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_341418.3, XM_001069955.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1384
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..1384
                     /gene="Pbx4"
                     /gene_synonym="Edg4"
                     /note="PBX homeobox 4"
                     /db_xref="GeneID:361131"
                     /db_xref="RGD:1305100"
     exon            1..179
                     /gene="Pbx4"
                     /gene_synonym="Edg4"
                     /inference="alignment:Splign:2.1.0"
     CDS             37..1176
                     /gene="Pbx4"
                     /gene_synonym="Edg4"
                     /note="endothelial differentiation, lysophosphatidic acid
                     G-protein-coupled receptor 4; pre-B-cell leukemia homeobox
                     4"
                     /codon_start=1
                     /product="pre-B-cell leukemia transcription factor 4"
                     /protein_id="NP_001101869.1"
                     /db_xref="GeneID:361131"
                     /db_xref="RGD:1305100"
                     /translation="MAAPLRPVPPQPAPRRSPPTAPLGHDTSDVLQQIMAITDQSLDE
                     AQARKHALNCHRMKSALFSVLSEIKGKTAVSVQTQEEDPPDAQLLRLDNMLLAEGVSR
                     PEKRGRGGAAAGSTATPGGCPNDNSIEHSDYRAKLSQIRQIYHSELEKYEQACREFTT
                     HVTNLLREQSRVRPVSSGEIEHMVSTIHSKFSAIQRQLKQSTCEAVMTLRSRFLDARR
                     KRRNFSKQATEVLNEYFYSHLSNPYPSEETKEELARKGGITVSQVSNWFGNKRIRYKK
                     NTGKFQEEATMYTGKTSTVTKTRVSGGQTSCQSTPSPDSCGPFPLTSGSDMVLTLRTL
                     AFLQPPPGGVCLQPLAHGSWQRATTSQPSSSPAGDSGSFNSDASD"
     exon            180..253
                     /gene="Pbx4"
                     /gene_synonym="Edg4"
                     /inference="alignment:Splign:2.1.0"
     exon            254..495
                     /gene="Pbx4"
                     /gene_synonym="Edg4"
                     /inference="alignment:Splign:2.1.0"
     exon            496..686
                     /gene="Pbx4"
                     /gene_synonym="Edg4"
                     /inference="alignment:Splign:2.1.0"
     exon            687..822
                     /gene="Pbx4"
                     /gene_synonym="Edg4"
                     /inference="alignment:Splign:2.1.0"
     exon            823..976
                     /gene="Pbx4"
                     /gene_synonym="Edg4"
                     /inference="alignment:Splign:2.1.0"
     exon            977..1083
                     /gene="Pbx4"
                     /gene_synonym="Edg4"
                     /inference="alignment:Splign:2.1.0"
     exon            1084..1384
                     /gene="Pbx4"
                     /gene_synonym="Edg4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggacctgtcc ctctgcgctc gctcggcccg tagttcatgg ccgcccctct gcgtcccgtg
       61 ccgccacagc ccgccccgcg ccgctcgccg cccacagctc cactgggcca tgacacgagc
      121 gacgtcctgc agcaaatcat ggccatcacc gaccagagcc tggacgaggc tcaggccaga
      181 aagcatgccc tgaactgcca tcggatgaag tctgctctct tcagtgtgct cagcgagatc
      241 aaggggaaga ctgctgtgag cgtccagacg caggaagagg accctcccga tgcccagctg
      301 ctgaggttgg ataacatgct gctggctgag ggtgtgtcca ggccagagaa gcgaggacga
      361 ggaggagcag cggcaggcag cacagcaaca ccaggtggct gcccaaatga caatagcatt
      421 gaacactcag actacagggc caagctgtcc cagatccgac agatttacca ctcagagcta
      481 gagaagtatg aacaggcctg tcgtgagttc accacgcacg tcaccaacct tctccgggaa
      541 cagagtaggg tgaggcccgt gtcctccggg gagatcgagc acatggtgag caccattcac
      601 agcaagttca gtgccatcca gaggcagctg aaacagagca cctgtgaggc tgtgatgacc
      661 ctacgctcac ggttcctgga tgccaggcgc aagcggcgga atttcagcaa gcaagccacc
      721 gaggtgctga atgaatactt ctattcccat ctgagcaacc cttaccccag tgaagagacc
      781 aaggaagagc tggccaggaa gggtggcatc acagtgtccc aggtctctaa ctggttcggc
      841 aacaaaagaa tccggtacaa aaagaatacg gggaaatttc aagaagaagc caccatgtac
      901 acggggaaaa catccacagt cactaagacc cgggtctccg ggggtcagac cagctgccag
      961 tccacaccca gcccagactc ctgtggcccc ttcccactga ccagtggaag tgacatggtt
     1021 ctcaccctgc ggaccctggc cttcctccag cccccacccg gaggagtctg cctacagccc
     1081 ctggcccatg gtagctggca gagggccacc acctcacagc catcctcctc acctgccgga
     1141 gactccggca gcttcaactc agatgcgtct gactaaggtt ttggaacctg gctgagtgct
     1201 gtggatgtct ggccctgggt cctgctgatc acctcagaag ccctggctgt ggctctgccc
     1261 tttccaggcc actcacttcc ctgctttggc gcgatgttct ttaaaacatg aattgagtgg
     1321 ctggcagtgg agtgttcgcc tggggcttgt tctgagcacc ccattaaagt tttgacctgt
     1381 ttgc
//
