LOCUS       XM_039093142            1675 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PDZ binding kinase (Pbk), transcript
            variant X1, mRNA.
ACCESSION   XM_039093142
VERSION     XM_039093142.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1675
                     /gene="Pbk"
                     /note="PDZ binding kinase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     ESTs, 1 long SRA read, 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 45 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:290326"
                     /db_xref="RGD:1309565"
     CDS             110..1123
                     /gene="Pbk"
                     /codon_start=1
                     /product="lymphokine-activated killer T-cell-originated
                     protein kinase isoform X1"
                     /protein_id="XP_038949070.1"
                     /db_xref="GeneID:290326"
                     /db_xref="RGD:1309565"
                     /translation="MEGISNFKTPNKLSEKRKSVLCSTPCVNIPASPFMQKLGFGTGV
                     SVYLMKRSPRGLSHSPWAVKKINPLCDDHYRTVYQKRLTDEAKILKNLNHPNIVGYRA
                     FTEASDGSLCLAMEYGGEKSLNDLIEERNKDSGSPFPAAVILRVALHMARGLKYLHQE
                     KKLLHGDIKSSNVVIKGDFETIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAL
                     EENGIITDKADMFAFGLTLWEMMTLCIPHINLPDDDDDEDATFDESDFDDEAYYAALG
                     TRPSINMEELDESYQKVIELFCVCTNEDPKDRPSAAHIVEALELDGQCCGLSSKHSLY
                     GNC"
ORIGIN      
        1 ggggagggtt cgcggacagg agagagactt cctctacggg aggatccagg acctggagga
       61 gatctgcgcg gaagaacagc aaactgaggg acctaaagtg attgctacaa tggaaggaat
      121 cagtaatttc aagacgccaa acaaattatc tgaaaaaagg aaatctgtat tatgttcaac
      181 tccatgtgta aatatccctg cctctccatt tatgcagaag ctcggctttg ggactggggt
      241 cagtgtttac ctaatgaaaa gatctccgag agggttgtcc cattctcctt gggctgtgaa
      301 aaagataaat cctttatgcg atgatcatta tcgaactgtg tatcagaaga gactaactga
      361 tgaagctaag attttaaaaa accttaatca cccaaacatt gtaggctatc gtgcttttac
      421 tgaagccagt gatggtagtc tgtgccttgc tatggagtat ggaggtgaaa agtctctgaa
      481 tgacttaata gaagagcgga acaaagacag tggaagtcct tttccagcag ctgtaattct
      541 cagagttgct ttgcacatgg caagagggct aaagtatctg catcaggaaa agaagctgct
      601 gcatggagac ataaagtctt caaatgttgt aattaaaggt gactttgaaa caattaaaat
      661 ctgtgatgta ggagtctctc tgccattgga tgaaaatatg actgtgactg atcctgaggc
      721 ctgttatatt ggtactgagc catggaaacc caaagaagca ttggaggaaa atggcattat
      781 tactgacaag gcagatatgt ttgcttttgg ccttactctt tgggaaatga tgactttatg
      841 tattccacac atcaaccttc cagatgatga tgatgatgaa gatgcaacat ttgatgagag
      901 tgacttcgat gatgaagctt actatgcagc tctggggaca agaccatcca tcaatatgga
      961 agaactggat gaatcctacc agaaggtcat tgaactcttc tgtgtgtgta ctaatgagga
     1021 tcctaaagat cgcccatctg ctgcacacat cgttgaagct ttggaactag atggccaatg
     1081 ttgtggtcta agctcgaagc atagcttgta tgggaactgt taactagatg tatttattta
     1141 gctaatataa cttatagtag ctagattcta gaagtagctt attttaagac cattgtacat
     1201 agttaataat tgtataacct tctgacatgt tatttcctat atatgcattt attgtactgg
     1261 atagtctttg aagtttaaaa aactctccag gtatctagat gctgctgccc ctactgattt
     1321 aaacactagt gacctctgtt ctaagatgac ttagaatcaa gggaccattg ctttgttaaa
     1381 gaccgtttta gatattcttg cttctttaat gggttactaa aaatttcact atacacacag
     1441 tacagttaat tgtctgctca tagtgtccac cttttagttg gcctgttggc ccatgtgccc
     1501 tgaagcttaa gagcttggtg cagaagcata gcccctagaa tgtttcagac cctggttact
     1561 gtcttgcctc tctccactcc ttagcatcta atttactttg tttttactga ctgtatacga
     1621 agtcttctaa aagctatgta agaataaaca ataaaaacag ttttagtacc aggca
//
