LOCUS       XM_006252105            1954 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PDZ binding kinase (Pbk), transcript
            variant X5, mRNA.
ACCESSION   XM_006252105
VERSION     XM_006252105.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006252105.3.
            
            On Aug 7, 2014 this sequence version replaced XM_006252105.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1954
                     /gene="Pbk"
                     /note="PDZ binding kinase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     ESTs, 1 long SRA read, 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 31 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:290326"
                     /db_xref="RGD:1309565"
     CDS             389..1402
                     /gene="Pbk"
                     /codon_start=1
                     /product="lymphokine-activated killer T-cell-originated
                     protein kinase isoform X1"
                     /protein_id="XP_006252167.1"
                     /db_xref="GeneID:290326"
                     /db_xref="RGD:1309565"
                     /translation="MEGISNFKTPNKLSEKRKSVLCSTPCVNIPASPFMQKLGFGTGV
                     SVYLMKRSPRGLSHSPWAVKKINPLCDDHYRTVYQKRLTDEAKILKNLNHPNIVGYRA
                     FTEASDGSLCLAMEYGGEKSLNDLIEERNKDSGSPFPAAVILRVALHMARGLKYLHQE
                     KKLLHGDIKSSNVVIKGDFETIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAL
                     EENGIITDKADMFAFGLTLWEMMTLCIPHINLPDDDDDEDATFDESDFDDEAYYAALG
                     TRPSINMEELDESYQKVIELFCVCTNEDPKDRPSAAHIVEALELDGQCCGLSSKHSLY
                     GNC"
ORIGIN      
        1 agcggctaga gaatgattga gggagcaccc agggaagaca gcggatggag gagagtaggg
       61 gaaccccctt ggaatcatcg tgcacctcca agtccctgtc cttgagctcc ttggtcgcag
      121 agagtttggg ggttctggga gaaagtcacc cccttcccca tgaaggaggc agggaagcac
      181 ttctcaggtg aggccacagt cgaaaggtgg cctgtggtag ggcaatgact cattgggtac
      241 agtctgtgcc cagcatgcat gcaaccctgg gatccatctt caggacccaa aaacctggga
      301 gcagtagtaa gtgcctgtgg tctcagtact agggaatgga gaccgaagaa aggacaggta
      361 gtgtgactga cctaaagtga ttgctacaat ggaaggaatc agtaatttca agacgccaaa
      421 caaattatct gaaaaaagga aatctgtatt atgttcaact ccatgtgtaa atatccctgc
      481 ctctccattt atgcagaagc tcggctttgg gactggggtc agtgtttacc taatgaaaag
      541 atctccgaga gggttgtccc attctccttg ggctgtgaaa aagataaatc ctttatgcga
      601 tgatcattat cgaactgtgt atcagaagag actaactgat gaagctaaga ttttaaaaaa
      661 ccttaatcac ccaaacattg taggctatcg tgcttttact gaagccagtg atggtagtct
      721 gtgccttgct atggagtatg gaggtgaaaa gtctctgaat gacttaatag aagagcggaa
      781 caaagacagt ggaagtcctt ttccagcagc tgtaattctc agagttgctt tgcacatggc
      841 aagagggcta aagtatctgc atcaggaaaa gaagctgctg catggagaca taaagtcttc
      901 aaatgttgta attaaaggtg actttgaaac aattaaaatc tgtgatgtag gagtctctct
      961 gccattggat gaaaatatga ctgtgactga tcctgaggcc tgttatattg gtactgagcc
     1021 atggaaaccc aaagaagcat tggaggaaaa tggcattatt actgacaagg cagatatgtt
     1081 tgcttttggc cttactcttt gggaaatgat gactttatgt attccacaca tcaaccttcc
     1141 agatgatgat gatgatgaag atgcaacatt tgatgagagt gacttcgatg atgaagctta
     1201 ctatgcagct ctggggacaa gaccatccat caatatggaa gaactggatg aatcctacca
     1261 gaaggtcatt gaactcttct gtgtgtgtac taatgaggat cctaaagatc gcccatctgc
     1321 tgcacacatc gttgaagctt tggaactaga tggccaatgt tgtggtctaa gctcgaagca
     1381 tagcttgtat gggaactgtt aactagatgt atttatttag ctaatataac ttatagtagc
     1441 tagattctag aagtagctta ttttaagacc attgtacata gttaataatt gtataacctt
     1501 ctgacatgtt atttcctata tatgcattta ttgtactgga tagtctttga agtttaaaaa
     1561 actctccagg tatctagatg ctgctgcccc tactgattta aacactagtg acctctgttc
     1621 taagatgact tagaatcaag ggaccattgc tttgttaaag accgttttag atattcttgc
     1681 ttctttaatg ggttactaaa aatttcacta tacacacagt acagttaatt gtctgctcat
     1741 agtgtccacc ttttagttgg cctgttggcc catgtgccct gaagcttaag agcttggtgc
     1801 agaagcatag cccctagaat gtttcagacc ctggttactg tcttgcctct ctccactcct
     1861 tagcatctaa tttactttgt ttttactgac tgtatacgaa gtcttctaaa agctatgtaa
     1921 gaataaacaa taaaaacagt tttagtacca ggca
//
