LOCUS       XM_001057305            3907 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PAX3 and PAX7 binding protein 1
            (Paxbp1), transcript variant X1, mRNA.
ACCESSION   XM_001057305
VERSION     XM_001057305.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001426992.1.
            
            On Jan 21, 2021 this sequence version replaced XM_001057305.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3907
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3907
                     /gene="Paxbp1"
                     /note="PAX3 and PAX7 binding protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 32 ESTs, 7 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     178 samples with support for all annotated introns"
                     /db_xref="GeneID:681004"
                     /db_xref="RGD:1584739"
     CDS             134..2890
                     /gene="Paxbp1"
                     /codon_start=1
                     /product="PAX3- and PAX7-binding protein 1 isoform X1"
                     /protein_id="XP_001057305.1"
                     /db_xref="GeneID:681004"
                     /db_xref="RGD:1584739"
                     /translation="MFRKARRVNVRKRNDSEEEERERDEEQEPPPLLPPPASGEEPGP
                     GGGDRAPAGESLLGPGPPPPPSAHTPGLGAEAGGGIPGGAEPGNGLKQRKRPRENKEV
                     PRASLLSFQDEEEENEEVFKVKKSSYSKKIVKLLKKEYKEDLEKSKIKTELSAAADSD
                     QPLDKMCHAKDTNPEDGVVISEHGEDEMDMESEKEEEKPKAGGAFSNALSSLNVLRPG
                     EIPDAAFIHAARKKRQLARELGDFTPHDSEPGKGRLVREDENDASDDEDDDEKRRIVF
                     SVKEKSQRQKIAEEIGIEGSDDDALVTGEQDEELSRWEQEQIRKGINIPQVQASQPTE
                     VNMYYQNTYQTMPYGASYGVPYSYTAYGSSDAKSQKSDNTVPFKTPSNEAAPITIDLV
                     KKQLKDRLDSMKELHKTNRQQHEKHLQSRVDSTRAIERLEGSSGGIGERYKFLQEMRG
                     YVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDESSEFSSHSNKALM
                     APNLDSFGRDRALYQEHAKRRIAEREARRTRRRQAREQTGQMADHLEGLSSDDEETST
                     DITNFNLERDRILKESSKVFEDVLESFCSIDCIKAQFEAWRSKYYMSYKDAYIGLCLP
                     KLFNPLIRLQLLTWTPLEAKCRDFENMLWFESLLFYGCEEREQEKDDVDVALLPTIVE
                     KVILPKLTVIAENMWDPFSTTQTSRMVGITLKLINGYPSVVNAENKNTQVYLKALLLR
                     MRRTLDDDVFMPLYPKNVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQE
                     LSIDGLLNRYILMAFQNSEYGDDSIRKAQNVINCFPKQWFVNLKGERTISQLENFCRY
                     LVHLADTIYRNSIGCSDVEKRNARENIKQIVKLLASVRALDHAVSVASDHNVKEVKSL
                     IEGK"
ORIGIN      
        1 tgcgccgtac ctagctagag ccgcgacgac ccggctggag ctctcgcgac tgcgcgtgcg
       61 cggtggtggt ctccgcgctc cctcgtcctc tcagtctgcg agcggctgtg aaagcgcggt
      121 gacggcggct gggatgttcc gaaaggcccg gcgggtgaac gtgcgcaagc ggaatgactc
      181 ggaggaggag gagcgggagc gagatgaaga gcaggagccg ccgccgttgc taccgccgcc
      241 ggcctcgggc gaagagcctg gccctggcgg cggcgacagg gcccccgcgg gggaatcgct
      301 cctgggcccg gggccgccgc cgccgccctc cgcgcatacc ccgggcctgg gcgccgaggc
      361 tgggggcggc atccctggtg gcgcggagcc cggcaacggg ctgaagcagc gcaagaggcc
      421 tcgcgagaac aaagaggtgc ccagggccag cctgctgagc ttccaggacg aggaggaaga
      481 aaatgaagaa gtgttcaagg taaagaaatc aagttacagc aaaaagatag ttaaattgct
      541 taagaaagaa tataaagaag accttgaaaa atcaaagatc aagacagaac tcagcgcagc
      601 ggctgacagt gaccagcctc tggacaaaat gtgtcatgct aaggacacaa atccagaaga
      661 tggtgttgtc attagcgagc acggtgaaga cgagatggac atggagagcg agaaggagga
      721 ggagaagccc aaggctgggg gtgccttctc caatgctctg tcttccctga acgtgctccg
      781 cccaggagaa attccagatg cagcttttat ccatgctgca agaaaaaagc gccaactggc
      841 ccgggaactg ggagacttca ctcctcatga cagtgagcct ggtaaaggcc gccttgtccg
      901 agaggatgag aatgatgcca gcgatgatga ggatgatgat gagaaacgcc ggatcgtttt
      961 ttctgtgaag gaaaagtcac aaagacaaaa gatcgctgag gagataggta ttgaggggag
     1021 tgacgatgat gccttagtaa ctggagagca agacgaagag ctcagccgct gggagcagga
     1081 acagattaga aagggaatta acatccctca ggttcaagca agtcagccca ctgaagtgaa
     1141 tatgtactac cagaacactt accagacaat gccttatggt gcatcctatg gcgtacctta
     1201 tagttataca gcctatggat catcagatgc caagtctcaa aaatcagata acacagtccc
     1261 tttcaaaact cccagtaacg aggcggctcc cattactatt gatttggtaa agaaacagct
     1321 taaagacagg ttggactcca tgaaagaatt gcacaaaacc aatcgacagc agcatgaaaa
     1381 acacctgcaa agccgagtgg actccaccag ggccattgag agactagaag ggtcttctgg
     1441 gggcattggt gaacggtata aatttttgca agaaatgcga gggtatgtcc aagacttgct
     1501 tgagtgtttc agtgaaaagg tgccgctgat taatgaactt gaatcagcaa tacatcagct
     1561 gtacaaacag cgagcttccc gccttgtcca aagacgacaa gatgatatta aagatgaatc
     1621 ttcggagttt tcaagccatt caaataaagc tctgatggca ccaaatcttg attcctttgg
     1681 acgtgatcgg gcactttatc aagaacatgc gaaacgtcgg attgcagagc gggaagccag
     1741 gaggactcgc cgtcggcaag ccagagagca aaccggccag atggcagatc accttgaagg
     1801 cctgtccagc gatgatgaag agacgtctac agacattacc aatttcaatc tggagagaga
     1861 ccgaattttg aaagagtcca gcaaagtttt tgaagatgtc cttgagagtt tctgttcaat
     1921 tgactgcatt aaagcacagt ttgaagcgtg gcgttcaaaa tactacatgt cctataagga
     1981 tgcgtacatt ggtctttgtt tgccaaaact gttcaaccct ctcatcagac ttcagctcct
     2041 cacctggact cctcttgagg caaaatgccg tgactttgaa aatatgctgt ggtttgaatc
     2101 tctgctgttc tatggttgtg aagagcgaga acaagagaag gatgatgttg acgtagctct
     2161 gctgcccacc attgtggaga aggtcattct tcccaagctg acagtgatag ctgagaacat
     2221 gtgggatccc ttttccacaa cgcagacgtc gagaatggtc ggaatcactc tgaagttaat
     2281 aaatggctat ccttcagtag tcaatgcaga gaataagaac acacaggttt accttaaagc
     2341 acttttattg aggatgagaa gaactttgga tgatgatgta ttcatgcctc tgtatcccaa
     2401 aaatgtttta gaaaataaaa attctgggcc ttacttattt tttcaacgac agttttggtc
     2461 ttctgtcaag ctattgggaa attttcttca gtggtacggc attttctcaa acaaaactct
     2521 tcaggagtta tcaatagacg gcttgttaaa cagatacatc ctcatggctt ttcagaactc
     2581 agaatacgga gatgacagca tcagaaaagc ccaaaatgta atcaactgtt tccctaaaca
     2641 gtggtttgtg aatctgaaag gagaaagaac tatttctcag ttagaaaatt tttgtcgata
     2701 tcttgtacat ttagcagata caatttacag gaacagtatt gggtgctctg atgtggaaaa
     2761 aagaaatgca agggaaaata taaaacagat agtgaaactc cttgcaagtg ttcgggcttt
     2821 ggatcatgct gtatctgttg caagtgacca caatgtgaaa gaagtcaagt ctctgattga
     2881 aggaaaatag atctgagacc aaaacgtgtt tgctttgctg ccattcccag tgtgtaaatt
     2941 ttgtatatat gtaaagtttc ttaaactgta ctatactgat tcttgtttta atacaaaaac
     3001 attatattaa tactgtgtcc ttaaatgtga tttcttcaga atgaaaggaa ttcagattat
     3061 ttctagcagt ctatgggtgt tttccttact gcctgtcata ttttgtttat ggaagtattt
     3121 tgtatggtca ttaaattaac tttgtttgag tgtcctctat gaatgatgtg tttagtgtaa
     3181 attgtgtaat tatgcgtgtg tgtgtgtgtg tgtgtgtgtg ttgcatatat ttataccacc
     3241 caggattttc atgctgggaa tctgcggtgt tttctaacag ccgaccgtta cccagtagcc
     3301 gttgtcttag ggaagcaccg cactgctgca gcagaagggc agcaggtgcg ggtcttcact
     3361 tccacttggc tagtgtcact gtcactgtag ctgtgctgcc ttaaactgaa aactgaaaga
     3421 tgactttgtg atcgagtgag tgtggaactt ctgtgagtca gcctgggtgg caactgtggg
     3481 tttgctgtga gctctaggca atatatgcaa tagtttgggg caggatgtca gtttagtctt
     3541 tgacagtaag cccacagact aactgcacag cttagcctga ctgtccttgt tatttccctc
     3601 cctgcccggc ctataggtac atgcatttct atagtctatc tatcctgttt tgaatcccac
     3661 atatgtgagt tctatatgca ataaagaaca tgccttgctg attagacacg cccaggcagt
     3721 ttactatcta tggtattctg taatgtttat aatacactgt aaatactcag agaaacttgt
     3781 tttaaggtta atgctttctg attctgtgat tttcagaaga ggaacttttt ggaaattcag
     3841 gactattgtt tgataaatat atatgtaatt aagctttagc caagcattaa attaattttt
     3901 aaataca
//
