LOCUS       XM_056985391            3967 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PAT1 homolog 2 (Patl2), mRNA.
ACCESSION   XM_056985391
VERSION     XM_056985391.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 2% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-22                JACYVU010000118.1  32954469-32954490   c
            23-288              JACYVU010000118.1  32949541-32949806   c
            289-369             JACYVU010000118.1  32948267-32948347   c
            370-479             JACYVU010000118.1  32947486-32947595   c
            480-563             JACYVU010000118.1  32946950-32947033   c
            564-708             JACYVU010000118.1  32946577-32946721   c
            709-829             JACYVU010000118.1  32946127-32946247   c
            830-927             JACYVU010000118.1  32945939-32946036   c
            928-981             JACYVU010000118.1  32945710-32945763   c
            982-1115            JACYVU010000118.1  32945482-32945615   c
            1116-1275           JACYVU010000118.1  32945203-32945362   c
            1276-1416           JACYVU010000118.1  32944625-32944765   c
            1417-1511           JACYVU010000118.1  32942972-32943066   c
            1512-1602           JACYVU010000118.1  32942389-32942479   c
            1603-3967           JACYVU010000118.1  32940023-32942387   c
FEATURES             Location/Qualifiers
     source          1..3967
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3967
                     /gene="Patl2"
                     /note="PAT1 homolog 2; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: deleted 1 base in
                     1 codon; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 91% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:366176"
                     /db_xref="RGD:1307887"
     CDS             1..1635
                     /gene="Patl2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein PAT1 homolog 2"
                     /protein_id="XP_056841371.1"
                     /db_xref="GeneID:366176"
                     /db_xref="RGD:1307887"
                     /translation="MFLEKLQESLLSVSQPLTNVSIFSPGLHLQHRPSKFSVPLAPEE
                     GLECAFQLEEEEKENEEKFVCSDWAPEGKEEGNDLWDPAIVSAIQNTQVPQQRGLHSS
                     PTVRASGALGMSPASLHFLCQSVFPRTSSPAHHFGPQQPSPDPFLFCSPLTPWPPKLR
                     LPSHLTQLHPQHQKILQQQQQQWSQTARRVPGQKPRSRESDAYANLMTRKEKDWVIRV
                     QMVQLQSENPRLDDYYYQKYYQKLEKRQADQELLGQRNRAQSLKLVTPYIQKSEVYES
                     VVRIEGSLGQVAVSTCFSPRRAIDAVSHGTQEQDTGAASSQRLRVLSQIEKMFLQLLK
                     IEEGQNDGLPQHYHLREQSNQVEKLFQALKTQEQNNLEEAADNLLQVLSVRKGKIFVA
                     RLLPFLLQDQAVSLLLYITYHLPLLIQRDMADQSLQMLFKPLRKYIRHLTFPQLLHAL
                     QGLMLLSPDSSERPVSVVLQNQFGISLLYALLSHGEQLVSLDSSLQSSSDCVAWTDLV
                     ILVAWEIAQLPAASLAEPLAFPRNLLPCSTTTWTNN"
ORIGIN      
        1 atgttcctgg agaagttaca agagtctctg ttgagtgtca gtcagcctct caccaatgtc
       61 tccatcttct ccccaggtct gcacttacag cacaggccaa gcaaattctc tgttcccttg
      121 gctcctgaag aaggcttaga atgtgccttc caactggagg aagaagagaa ggagaacgag
      181 gagaaatttg tgtgttcaga ctgggcccca gaagggaagg aggaggggaa tgatctctgg
      241 gatccagcca tagtgagcgc catccaaaac acccaagtac cacagcagag agggctgcac
      301 agttccccca cagtcagggc ctctggtgcc ttggggatgt caccagcctc cctgcatttt
      361 ctgtgtcagt ccgtgttccc gagaaccagt tctccagccc atcattttgg acctcaacag
      421 ccctcaccag atccttttct gttctgcagc cctctgaccc cgtggccccc taaactcaga
      481 cttcccagtc atctgaccca gctccaccct cagcatcaga agatcctaca gcagcagcag
      541 cagcagtgga gtcagacagc aagacgtgtt ccaggccaga agcctcggtc tcgtgagtca
      601 gacgcctatg ctaacctcat gacccgaaaa gagaaggact gggtgataag agtgcagatg
      661 gttcaactgc agagcgagaa cccccgcctg gatgattact actaccagaa gtactatcag
      721 aagctagaga agaggcaggc agaccaagag ctgcttgggc agaggaacag ggctcagtct
      781 ctcaagttgg tcacgcctta catccagaag tctgaagttt atgagtcagt ggtacgaatc
      841 gagggttccc tgggccaggt ggctgtatca acatgtttta gccctcgccg agctattgat
      901 gctgtatctc acggaactca agagcaggat acaggagctg cgagcagcca gagacttcgg
      961 gtattatccc agattgagaa gatgttcctt cagttattaa aaatagagga gggccagaac
     1021 gatgggttac cacaacacta ccacttgagg gaacagagca accaggttga gaagctcttt
     1081 caggccttaa agactcagga acagaacaac ctggaggagg cagcagataa ccttctgcaa
     1141 gtgctgtctg tgaggaaagg gaaaattttc gtggctcggc tgctcccctt cctgctccag
     1201 gatcaagctg ttagcctcct cctgtatatc acgtaccatc tgcccctcct gatccagaga
     1261 gacatggctg atcagagtct acaaatgcta ttcaaacctc tgaggaaata tatcagacat
     1321 ttgaccttcc ctcagctcct ccatgccctg caaggtctaa tgttgctatc acctgactcc
     1381 tcagagcggc cagtctctgt ggtacttcag aatcagtttg ggatatccct gctgtatgcc
     1441 ttgctaagtc atggagagca gctggtgtcc ctggattctt ccctgcaatc cagcagtgac
     1501 tgcgtagctt ggacagactt ggtgattctg gttgcctggg agattgctca gttacctgca
     1561 gcatccttag cggaacctct agccttcccc aggaatctcc tcccctgttc taccaccaca
     1621 tggaccaaca attagttcag cagctggaag ccagaatgga gtaagtgctc atagaaacaa
     1681 agtctcaccc tcgtcaagcc cagtccaggt ctgtgtacca aatctcctat gaactctgac
     1741 catggaaaat aatgagcttc agacacggtc tgcctttgat cttagcactt agggtcagag
     1801 gtaagttcca agccagccag gactacatag tgagaaatga gactctgtct caaaaaagcc
     1861 caacccaaac caaacaagca aaaacaaagc tcttgggcca gtgagatggc tcagcaggta
     1921 gactcatatg atggaaagag gcaagtaact cccgaaagtt gtcctttgac ctccaatgta
     1981 ataaaaaaaa tctagaagtt gctctagaca ctcaggtatt tactgagtaa cccggtccag
     2041 actcattagg gtcctgtggc ctgttgagcc acaactttgt atttattccc agcgtttggt
     2101 catctgtagg tgctatttca gagttgtaat ttgaaaagtt gaataattca ttcattcaaa
     2161 caatagttga gagactattc caaggctctg agagaaataa gagaccatct ctgtcctcag
     2221 aatttaccgg ctgttagaat gagccaagca tgaattaaac cataggtgtc tgtaaaatgg
     2281 cattgtttgc aattagctct tattctttgt aggcttgcct atatctactg atgtattagt
     2341 tctggaacat atacctgaga aattaaaata ccagaaatga aactccatca cctgtctaca
     2401 gtgaaaccgt cggggccatt tcctatcctt tgttgtgctg gagaaccctg ccacatcgtc
     2461 atatcctttc ctaaaatcta ggtgatttgc ctaaaatgaa ggcatgacta cttgggtata
     2521 attaaaggaa tatcaaatgg tatgttgaaa cttgtttgta agtttggaat tacaaatgaa
     2581 gcctactttc gtgaatatat caagaatatc cttcctaata aggggaaagg ccttgttgta
     2641 tttaataaaa gtctgatctg ggatgttgct tcagtgttgt cagactttat gtaaaccaaa
     2701 cagttcagct aaggctgaga ggcttggatg taagcatctt ccttggcgta ggaaaataca
     2761 tggctgtatt ttgtcaaatg aaagacctgc ttcatcaagg aacactacag tacctttcat
     2821 gagccacgct gggtttcagg caggaagata acagtagtga acaagtctct gctacctcca
     2881 ggtttacata gagattggtc aggaattgac ctaaaatatc agttagtcat aaatactatg
     2941 gggaaacatg gtgtgatttg agagtgacga gtagagagag gctttagact ttagactgaa
     3001 tgaaccagga aggcaggtta acaggttgcc attcagccaa aatgttcagc ttgtagcatt
     3061 gactatgtta cagaggcacc gttactaggc ggggaggcat aatcctgtat tcctagtacc
     3121 tggaaggcca gtgaagggag gatcaggcgt ctaaggccac tagggagcct ttatcaaata
     3181 agtagcttga ccaaatgcct tttcagtacc tctcagctct ctctgccttc tcttttctgt
     3241 atcggactat acttccctga gaaattcaga agaaattgaa aggtgaacta cttcaccatc
     3301 tcccctctgc gtgcatccat ctgttacaaa ggatatcgtt tgacatatat aaccatgtta
     3361 accttcacga ttttaaggaa gtccttggtg gaggaccaca aagaatagat tgacctcaaa
     3421 aggaggtcta ttggtctgaa aagttggcac ccccaagtcc tgtggctggg tacccaagga
     3481 tacaagaaaa atcacctcga agggtctgaa aatcagtttt gtagttagga ggaagagctt
     3541 ggtaaactgc tcttcaaaac tacctgatag gggaagatga gtccattgtc tggtttgttt
     3601 gttttttaaa ccctggtccc aagcagctgg gggagtgtgt gtgtgtgtgt gtgtgtgtgt
     3661 gtgtgtgtgt gtgtgtgtgt gtgtgtttaa gggtggaggg ttctttatag ttctagttct
     3721 ttatagtttt aaaactggta gtttacttgc taccaagaaa accgcacttg gcctgtaacc
     3781 aagcagcaca aaaagtgaag agtaatccgc aacatggttt cagtggagta tgaggcacca
     3841 gcctcaaaaa tctttggtaa caagatcagc ccaggcagct gaaaggcctc ggcaaatatt
     3901 gaaatgagct gagtagggga aggtgtggtt ttgcaggatt cagtttagag acgcccccac
     3961 cccaggc
//
