LOCUS       XM_039109186            7385 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PATJ, crumbs cell polarity complex
            component (Patj), transcript variant X1, mRNA.
ACCESSION   XM_039109186
VERSION     XM_039109186.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109186.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7385
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7385
                     /gene="Patj"
                     /gene_synonym="Inadl; Inadl2; RGD1565362"
                     /note="PATJ, crumbs cell polarity complex component;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 36 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 20 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:140581"
                     /db_xref="RGD:1565362"
     CDS             177..5753
                     /gene="Patj"
                     /gene_synonym="Inadl; Inadl2; RGD1565362"
                     /codon_start=1
                     /product="inaD-like protein isoform X1"
                     /protein_id="XP_038965114.1"
                     /db_xref="GeneID:140581"
                     /db_xref="RGD:1565362"
                     /translation="MPENPAAEKMQVLQVLDRLRGKLQEKGDTTQNEKLSAFYETLKS
                     PLFNQILTLQQSIKQLKGQLSHIPSDCSANFDFSRKGLLVFTDGSITNGNAHRPCSSI
                     TASESLPWTQRSGNEDFTSVIQQMAQGRHIEYIDIERPSTGGLGFSVVALRSQSLGLI
                     DIFVKEVHPGSVADRDQRLKENDQILAINDTPLDQNISHQQAIALLQQATGSLRLVVA
                     REVGHTQSRTSTSSADTTLPETVRWGHTEDVELINDGSGLGFGIVGGKSSGVVVRTIV
                     PGGLADRDGRLQTGDHILKIGSTNVQGMTSEQVAQVLRNCGNSVRMLVARDPVGEIAV
                     TPPTPASLPVALPVVATRTLGSDSSPFETYNVELVKKDGQSLGIRIVGYVGTAHPGEA
                     SGIYVKSIIPGSAAYHNGQIQVNDKIVAVDGVNIQGFANQDVVEVLRNAGQVVHLTLV
                     RRKTSLSASPFEQPSSREAVAEPPEVPELTGSLKPETNSRMEAEEIGERLDNLRKDTV
                     QALEKPDVYPEDIPGCPENELKSRWENLLGPDYEVMVATLDTQIADDEELQKYSKLLP
                     IHTLRLGMEVDSFDGHHYISSIAPGGPVDTLNLLQPEDELLEVNGVQLYGKSRREAVS
                     FLKEVPPPFTLVCCRRLFDDEASVDEPRTVEPSLLEAEVDRSVDVSTEDDDGELALWS
                     PEVKTVELVKDCKGLGFSILDYQDPLDPMRSVIVIRSLVADGVAERSGELLPGDRLVS
                     VNEFSLDNATLAEAVEVLKAVPPGVVHLGICKPLVEEEKEEKEEHFIFHSNNNGDNSE
                     SPETVHEIHSSLILEAPQGFRDEPYLEELVDEPFLDLGKSLQFQQKDMDSSSEAWEMH
                     EFLSPRLERRGEEREMLVDEEYEIYQDRLRDMEAHPPPPHIREPTSASPRLDLQAGPQ
                     WLHADLSGGEILECHDTESMMTAYPQEMQDYSFSTTDMMKETFGLDSRPPMPSSEGNG
                     QHGRFDDLEHLHSLVSHGLDLGMMTPSDLQGPGVLVDLPAVTQRREQEELPLYRLPSA
                     RVVTKPSSHVGMVSSRHANAACELPEREEGEGEETPNFSHWGPPRIVEIFREPNVSLG
                     ISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTKALKTGDKILEVSGVDLQNASH
                     AEAVEAIKSAGNPVVFVVQSLSSTPRVIPSVNNKGKTPPQNQDQNTQEKKAKRHGTAP
                     PPMKLPPPYRAPSADTEESEEDSALTDKKIRQRYADLPGELHIIELEKDKNGLGLSLA
                     GNKDRSRMSIFVVGINPDGPAAADGRMRVGDELLEINNQILYGRSHQNASAIIKTAPT
                     RVKLVFIRNEDAVNQMAVAPFPVPSHSPSPVEDLGGTEPVSSEEDSSVDAKPLPERES
                     SKPEDLTQAVDDSMVAEQEKASESPDSAARQMKQPGYSAQVSSSSQEIPSAPAPLCQS
                     THADVTGSGNFQAPLSVDPAPLSVDPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDT
                     PLPGGSLPTKVGVWEKKLQEMMSQDAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDL
                     RSSSHEEAITALRQTPQKVRLVIYRDEAQYRDEENLEVFLVDLQKKTGRGLGLSIVGK
                     RSGSGVFISDIVKGGAADLDGRLIRGDQILSVNGEDVRQASQETVATILKCVQGLVQL
                     EIGRLRAGSWASSRKTSQNSQGDQHSAHSSCRPSFAPVITSLQNLVGTKRSSDPPQKC
                     TEEEPRTVEIIRELSDALGVSIAGGKGSPLGDIPIFIAMIQANGVAARTQKLKVGDRI
                     VSINGQPLDGLSHTDAVNLLKNAFGRIILQVVADTNISAIATQLEMMSAGSQLGSPTA
                     DRHPQDPEELLQRTAD"
ORIGIN      
        1 gcctctggcg aggtggagag acgcccaggt gaggaggccg ccacacttcc gtccaggtga
       61 gggcagcagc tgtacttccg ccaggtgagg aggccgtgat cgcagcctcg gggctcccac
      121 ccggctgtcg cctgatcaga cttaggattg aaagtgcttg aaaagagtga tccaaaatgc
      181 ctgaaaaccc tgctgcagag aaaatgcagg tcctgcaggt cctcgaccgc ctgaggggga
      241 agctgcaaga gaagggagac acgacgcaga acgagaagct gtctgcgttt tatgagacgc
      301 tgaagagccc tctcttcaac cagatcctta cactgcagca gtccatcaag cagctgaagg
      361 gacagctcag ccatatcccc tcagattgtt cagccaactt tgacttttct cggaagggct
      421 tgttagtgtt cacggatggt tccattacaa atgggaatgc ccacaggcct tgtagtagta
      481 taactgcatc tgaatcgttg ccttggactc aaagatcagg aaatgaagac tttacctcag
      541 tcattcagca gatggctcag ggccggcaca ttgagtatat agatatagaa cgcccttcaa
      601 ctggaggcct tggattcagt gtggtggctc tgagaagcca aagtctggga ttaattgaca
      661 tctttgtgaa ggaagtccat ccggggagtg tagcagacag ggatcagaga ttgaaggaaa
      721 atgaccagat tttggccatt aatgacaccc cattggatca gaatatttcc catcagcagg
      781 cgattgcatt actacaacaa gccactggat ctctgcggct ggttgtggcc agggaagtgg
      841 gccacacaca gagccgaaca tccaccagct cagctgatac aactctgcca gaaacggtgc
      901 gttggggcca cactgaagat gttgagctca ttaatgatgg ctctggatta ggttttggga
      961 tagttggagg caaatccagt ggtgtggtcg tgaggactat tgtccctgga ggattggcgg
     1021 accgagatgg aagactacag acaggggacc acatcttaaa gattggaagt acaaacgtgc
     1081 aaggaatgac cagtgaacaa gttgctcagg tgctaagaaa ttgtgggaat tcagtgagga
     1141 tgctggtggc cagagaccct gttggtgaaa ttgcagtaac acctccgacg cctgcatcct
     1201 tacctgttgc cctccctgtt gtagccacaa ggacccttgg ttctgacagt tctccttttg
     1261 agacttacaa tgttgaactt gtcaaaaaag atggacagag tcttgggatt agaattgttg
     1321 gctatgttgg aacagctcat ccaggggaag cttcagggat ttatgtgaaa agtataatcc
     1381 caggcagcgc tgcataccac aatggccaaa ttcaagtgaa cgataaaatt gtggctgtgg
     1441 atggtgtgaa tattcagggt tttgccaatc aggacgttgt tgaagttctg cggaacgcag
     1501 ggcaggtggt gcacctgacc ctagttcgaa ggaaaacatc tttatctgct tctccatttg
     1561 aacaaccttc aagcagagaa gctgttgcag aaccacctga agtgccagaa ctaactggat
     1621 ccctgaaacc agaaactaat tcgagaatgg aagcagagga aatcggagaa agactggata
     1681 atctgagaaa ggacaccgta caagccttag aaaaaccaga cgtatatcca gaggacatcc
     1741 caggctgtcc agaaaatgag ctgaaatcca gatgggaaaa cctactgggc ccagattatg
     1801 aagtaatggt agccacgttg gacacgcaga tagcagatga tgaggagctt cagaagtact
     1861 ccaagctgct gcctatccac actctgaggc ttggtatgga ggtggactcc ttcgatgggc
     1921 accactatat ctcctccatt gctcctgggg gtcctgtgga taccctgaac ctcctgcagc
     1981 cagaggatga gcttctcgag gtcaatggcg tgcagcttta tgggaagtct cgccgagaag
     2041 cagtctcctt tcttaaagaa gtgcccccac catttacctt ggtttgctgc cgccggctgt
     2101 ttgatgacga ggcctcagtt gatgagccga gaactgtgga accttctctt cttgaggcag
     2161 aggtcgaccg cagtgtagat gtcagcactg aagatgatga tggagaatta gccctgtggt
     2221 ctcctgaagt caagactgtg gagctggtca aagactgcaa aggcttagga ttcagcattt
     2281 tggattatca ggaccccctg gatcccatga ggtcagtgat tgtgattcgc tccttggtgg
     2341 cagatggcgt agcagaaaga agtggagaac ttttgcctgg agatcgccta gtctccgtca
     2401 atgagttctc tctggacaat gccactcttg ctgaggctgt ggaagtgttg aaggctgtac
     2461 ccccaggtgt ggtgcacctt ggcatctgta agcctttggt ggaggaggag aaggaggaga
     2521 aggaggaaca ttttattttc cattcaaaca acaatggaga taacagtgag tctccagaaa
     2581 ccgttcacga gatccactca tctttaatcc tcgaggcacc ccagggattt agagatgagc
     2641 cgtatcttga agaactcgtg gatgaacctt ttctagattt gggaaagtct ttgcagttcc
     2701 aacaaaaaga catggacagc agctcagaag cctgggaaat gcatgaattc ctgagccctc
     2761 ggctggagag aaggggtgag gaaagagaga tgcttgttga cgaggagtat gagatctacc
     2821 aagaccgcct ccgggacatg gaagcacacc caccacctcc tcacattcgg gagcccactt
     2881 ctgcatctcc caggctggat ctccaggccg gcccccagtg gctgcatgct gacctctcag
     2941 gaggagagat actcgagtgt cacgacacag agtccatgat gactgcttat ccccaggaga
     3001 tgcaggacta tagcttcagc accacagaca tgatgaaaga aacatttggc cttgactccc
     3061 ggccgcccat gccctcctct gaaggaaatg gtcagcacgg ccgatttgat gacttggaac
     3121 atcttcactc actagtgagc cacggcctgg atttaggcat gatgactcca agtgacttgc
     3181 aaggccctgg cgtgcttgta gatcttccag ctgtcaccca aagaagagaa caggaagagt
     3241 tgcccctgta ccgactcccc agtgcccgtg tggtcaccaa gccttcctcg cacgtgggaa
     3301 tggtgtcttc acgacatgca aatgctgcat gtgaattacc tgagagagag gaaggtgaag
     3361 gagaggaaac accgaacttc agtcactggg gcccaccaag aattgttgaa atctttagag
     3421 aacctaatgt gtctcttggc atcagcattg ttggtggaca aacagttata aaacgcctca
     3481 agaatggaga agaactcaag ggtatattca tcaagcaagt gttagaagac agtcctgcgg
     3541 ggaagaccaa ggcccttaaa actggagata aaatacttga ggtgtctggt gtagacctgc
     3601 agaatgcctc gcatgcagaa gccgtggagg caatcaagag tgcagggaac cctgtggtgt
     3661 tcgtggtaca gagcctgtca tccaccccaa gggtcatccc aagtgtgaat aacaaaggca
     3721 aaacacctcc ccagaatcag gaccaaaaca ctcaagaaaa gaaagctaag aggcacggaa
     3781 cagctccacc gccaatgaaa ctgcccccac cttacagagc tccctctgca gacactgagg
     3841 agagtgaaga agacagtgcc ctgaccgaca aaaagatcag gcaaagatat gcagacctgc
     3901 ctggagaatt gcacatcatc gaactggaaa aggataagaa tggactggga ctcagtctcg
     3961 ctggcaacaa ggaccggtca cggatgagca tatttgtggt ggggattaac ccagatggac
     4021 ctgctgctgc agatggacgg atgcgggttg gagatgagct gctagagata aacaatcaga
     4081 tcctttatgg aagaagtcat cagaatgcat ctgccattat taagactgcc ccgaccaggg
     4141 tcaaactggt tttcattaga aacgaagatg cagtcaatca gatggccgtc gctcccttcc
     4201 ccgtaccatc acattcccca tcgcctgttg aggatctggg tggcactgaa cctgtcagta
     4261 gtgaggaaga cagcagtgtg gatgctaaac ccctgcctga aagagaaagc tccaagccgg
     4321 aagacctgac ccaggcggtt gatgacagca tggtggcaga gcaggagaag gcatcagagt
     4381 cacctgacag tgctgcccgc cagatgaaac agccaggata ctcagcacaa gtctcctcca
     4441 gctcacaaga gatcccgtca gcaccagctc ccttgtgtca gtcaacacat gcagacgtca
     4501 caggctctgg taacttccag gctcccctct cagtggaccc tgctcctctc tcagtggacc
     4561 ctgcaacatg tcccattgtc cctggccaag aaatgatcat agaaatatcc aaggggcgct
     4621 ccgggcttgg actcagcatc gttggaggaa aggacacgcc tttgccagga ggaagtttgc
     4681 caacaaaggt gggagtttgg gaaaagaagt tgcaggaaat gatgagccag gatgctatcg
     4741 ttatccatga agtctatgaa gaaggtgcag cagcccgaga tggaagatta tgggctggag
     4801 accagatatt agaggttaat ggggttgatc tgaggagctc cagccatgaa gaagccatca
     4861 cagccctgag gcagacgccc cagaaggtga ggctggtgat atacagagat gaagcacagt
     4921 acagagatga ggagaacttg gaggtgttcc ttgtggatct gcagaagaag actggccgag
     4981 gactaggcct gagcattgtt gggaaacgga gtggaagcgg agtgttcatc tctgacattg
     5041 tgaaaggcgg agccgcagac ctcgatggga ggctaattcg aggagaccag atcttgtctg
     5101 tgaatggaga ggacgtgaga caagcctcac aggagacagt ggccaccatc ctgaagtgcg
     5161 tccagggcct tgtccagctg gagattggga gactccgagc cggttcctgg gcctcctcga
     5221 ggaagacctc acagaacagc cagggagatc agcacagtgc acacagcagc tgtcggcctt
     5281 cctttgcccc agtcatcacc agcctacaaa acctggttgg cacaaaaaga tcttcagatc
     5341 ctccccagaa atgcacagag gaggaaccac ggactgttga gataatcaga gagctcagtg
     5401 atgctcttgg agtcagtatc gctggaggaa aaggaagtcc tttaggagat ataccgatat
     5461 ttattgccat gattcaggcc aatggagtgg ccgcacgtac ccagaagctg aaggttggag
     5521 atcggattgt gagcattaat ggacaacctc tggacggact gtctcacaca gatgccgtta
     5581 atctactaaa gaacgccttc gggcgcatta tcctgcaggt cgtggcagac accaacatca
     5641 gcgccatagc gactcagctt gaaatgatgt ctgcaggctc ccagcttggc tctcccactg
     5701 ctgaccgaca tccgcaagac ccggaggagc tgttgcagag gaccgccgat taaagcgagg
     5761 tgggcagctc ttcagtggtg ttacccggaa ggcgttaccc ggaaggcgtt acccatgagc
     5821 aagctgtctc cattctaaag cagcagagag gggccgtggc cctgcctgct gctgccgccg
     5881 tgagctacgg gtcctgactt tttaacgaga atacagcaga attatgcggc ttccggttgg
     5941 gatgaaaagt tgcctcggct caaacccagt atcatcattg gctctgattc tgtttacaga
     6001 aactggagct gtggtctctg cttcctactc acatccccgg ttcccacaga ggcttaactg
     6061 caaactcctg tggtttcatc taatgagtag aaacaaaggt ttagcttgtc atcttaactc
     6121 gtgatttact tatgctaatt tgcctcttca aataaaccag aaaacattag cagtgtaatt
     6181 aacttcctcg caatgaacta ttcatatgct accgctggga attacagcag actgttctgt
     6241 gtgactcagt caagtggacc tcccgtccct gtctccggat aggtctgtat gttagccgtt
     6301 ggcgattctg aggagtccat ttacagacgc tgtaagctac tcaccatcct aataggcttt
     6361 gtttctgagt ttgacagcgc acactccaca ggaacaagta gccctcctgt ttgtgttcta
     6421 tccacactag ctcacattac tgggaagcta ctgggagtga tgggcatctt agcaggtcaa
     6481 aatcaccggt tcccaacccc tgcagactgc aggcgaggag gtggaaaccc tagaccacac
     6541 tgcagagata agcaagtttg agcggcctca gccctattgg aagcgagtta caagtttggt
     6601 ttgcctctcc ttcgccttca taccagtctg cagagggctg tgtgcagccc ttgaacataa
     6661 aggaactgag caaatgccct gggaatcaga cacagaagtg cttagcccga gtttcccagt
     6721 ctccgcttcc tattggctga agttctgtag ctgaaacagc aactgtggct gaagcctaag
     6781 agtgcttgta gagtgaaagg ggctgggaag ggagatgctc gtcactgaga acaaaggaaa
     6841 gtgccatgaa gggtgagtac agggtcagca gcagacatag tttagcatcc tagaactata
     6901 actcagtgca gcagattgct cagcaattac ccggagttta atgggcccta atttaaaatg
     6961 ttatttaact agtgaggatg ttaactgaag ttccctttga gtagatgtaa tcacaaagtg
     7021 cactgactct tgttgagata tttttcgtgg ctattagaaa gtgcagaatg cctcactttt
     7081 atgctgacag cgtattgcga tgaccggcat taaggttttt tgagattcta taggtttttt
     7141 tagaatttat aatgtatcta agatacatgg tttggttagc atctcatccc cagttcatga
     7201 gaagccacca acctcagtgt cctgtgtgaa tggtacccac aagaagacct caagcagcag
     7261 aaaccaaatg aagcccaatg aaagtgcacc ttaaacaata aagatagtga cattaatgct
     7321 ttccaagtgg gatcccgctc acttttaatg gaatggaatg gcgttaaata cacatattga
     7381 aataa
//
