LOCUS       NM_001402191            1000 bp    mRNA    linear   ROD 31-JUL-2024
DEFINITION  Rattus norvegicus prostate and testis expressed 4B (Pate4b), mRNA.
ACCESSION   NM_001402191 NM_001108757 XM_039082298
VERSION     NM_001402191.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Levitin,F., Weiss,M., Hahn,Y., Stern,O., Papke,R.L., Matusik,R.,
            Nandana,S.R., Ziv,R., Pichinuk,E., Salame,S., Bera,T., Vincent,J.,
            Lee,B., Pastan,I. and Wreschner,D.H.
  TITLE     PATE gene clusters code for multiple, secreted TFP/Ly-6/uPAR
            proteins that are expressed in reproductive and neuron-rich tissues
            and possess neuromodulatory activity
  JOURNAL   J Biol Chem 283 (24), 16928-16939 (2008)
   PUBMED   18387948
REFERENCE   2  (bases 1 to 1000)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On or before Jul 30, 2024 this sequence version replaced
            NM_001108757.1, XM_039082298.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.27864.1, CB776012.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16418986, SAMN16676809
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-89                JAXUCZ010000008.1  42249145-42249233   c
            90-209              JAXUCZ010000008.1  42247608-42247727   c
            210-1000            JAXUCZ010000008.1  42246492-42247282   c
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q21"
     gene            1..1000
                     /gene="Pate4b"
                     /gene_synonym="Pate4; Pate4a; Svs7"
                     /note="prostate and testis expressed 4B"
                     /db_xref="GeneID:120094107"
                     /db_xref="RGD:41308095"
     exon            1..89
                     /gene="Pate4b"
                     /gene_synonym="Pate4; Pate4a; Svs7"
                     /inference="alignment:Splign:2.1.0"
     CDS             23..331
                     /gene="Pate4b"
                     /gene_synonym="Pate4; Pate4a; Svs7"
                     /note="prostate and testis expressed protein 4; prostate
                     and testis expressed 4; seminal vesicle secretory protein
                     7; seminal vesicle protein, secretion 7; prostate and
                     testis expressed 4A"
                     /codon_start=1
                     /product="prostate and testis expressed 4 precursor"
                     /protein_id="NP_001389120.1"
                     /db_xref="GeneID:120094107"
                     /db_xref="RGD:41308095"
                     /translation="MNSMTKISILLIVALSFLCFTEANTNLICNTCNRSENSECKNGT
                     GQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF
                     "
     exon            90..209
                     /gene="Pate4b"
                     /gene_synonym="Pate4; Pate4a; Svs7"
                     /inference="alignment:Splign:2.1.0"
     exon            210..1000
                     /gene="Pate4b"
                     /gene_synonym="Pate4; Pate4a; Svs7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagccacctt ctaacatcca acatgaattc catgacaaaa atcagcatac tgctcatcgt
       61 ggctttatct tttctctgct tcacagaggc aaatacaaat ctcatctgta atacctgtaa
      121 tcgctcagaa aattcagaat gtaaaaacgg aactggccaa tgcactgcac cggaaggtgg
      181 atcgtgttca accatatcaa tctatcacgg acaacggcat gtactctcaa agcaaatgtg
      241 cttgggtcat tgcgaggaaa aaccgcatta caatggagac ttcatgattt acgtaatgtg
      301 ctgttccaaa aacttgtgta atagtttcta gatggagaag aatctcttga agatcatctt
      361 cggttcaaga tccaaactta acaaatgaac cgagatgagg aacttgcttc ctactctgtt
      421 tccacaccga cctgagatca ctgagacagc agcaacaaag gctgtgtcct catttctaac
      481 gaccacacca ttggaccact gcaaaagaaa aaacaatccc atgcttacca tgttatttta
      541 ctcttccaat tttcaacgtc taagccctgt aatagtgtcc caagaacttt tattttaatc
      601 tctagaatct atgaatgctg ctgtaagtgg caaaagagac attggagaag ggaataatct
      661 ctagatgaaa ggttgtgttt ggattgtcag gaagggtctt agtcctaagt acaaatgtcc
      721 ttataaaatg tggggggagg gggttgtgtg aattaactat agaagaggaa atgattgtgt
      781 aatggtgatt cagaattgga gtgatatccc ttgaagggga atcaaacagc caggagccaa
      841 gagatataaa aggccactag aagctgagaa gggcaatgaa attaattttt ctcaatgcct
      901 ccagaaaccc accacgctgc aacttgattt ttatcctcac cagatttatt ttttacttca
      961 gagttctaca aattgaataa atgcgtgttg ttttaagcaa
//
