LOCUS       NM_001270389             604 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus prostate and testis expressed 1 (Pate1), mRNA.
ACCESSION   NM_001270389 XM_003750461 XM_003754400
VERSION     NM_001270389.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Rajesh,A. and Yenugu,S.
  TITLE     Genomic organization, tissue distribution and functional
            characterization of the rat Pate gene cluster
  JOURNAL   PLoS One 7 (3), e32633 (2012)
   PUBMED   22479333
  REMARK    GeneRIF: Data show that PATE and PATE-F proteins were found to be
            expressed abundantly in the male reproductive tract and on the
            sperm.
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Levitin,F., Weiss,M., Hahn,Y., Stern,O., Papke,R.L., Matusik,R.,
            Nandana,S.R., Ziv,R., Pichinuk,E., Salame,S., Bera,T., Vincent,J.,
            Lee,B., Pastan,I. and Wreschner,D.H.
  TITLE     PATE gene clusters code for multiple, secreted TFP/Ly-6/uPAR
            proteins that are expressed in reproductive and neuron-rich tissues
            and possess neuromodulatory activity
  JOURNAL   J Biol Chem 283 (24), 16928-16939 (2008)
   PUBMED   18387948
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Oct 4, 2022 this sequence version replaced NM_001270389.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JF412808.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                JAXUCZ010000008.1  42308479-42308549   c
            72-107              JAXUCZ010000008.1  42308146-42308181   c
            108-140             JAXUCZ010000008.1  42307535-42307567   c
            141-263             JAXUCZ010000008.1  42307153-42307275   c
            264-604             JAXUCZ010000008.1  42306092-42306432   c
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q21"
     gene            1..604
                     /gene="Pate1"
                     /gene_synonym="Pate"
                     /note="prostate and testis expressed 1"
                     /db_xref="GeneID:100361657"
                     /db_xref="RGD:2319716"
     exon            1..71
                     /gene="Pate1"
                     /gene_synonym="Pate"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..397
                     /gene="Pate1"
                     /gene_synonym="Pate"
                     /note="prostate and testis expressed protein 1"
                     /codon_start=1
                     /product="prostate and testis expressed protein 1
                     precursor"
                     /protein_id="NP_001257318.1"
                     /db_xref="GeneID:100361657"
                     /db_xref="RGD:2319716"
                     /translation="MFKPHLLRCLTLLCYLRVFFGSLPGDANKPDKVLIHENNNVVEI
                     VQCRMCHLQFPGEKCSRGRGICTATVEEACMAGKIFKKDGTMWLKFMGCLKNCANVKK
                     IKWGSYLVDFRCCRGHDMCNERF"
     exon            72..107
                     /gene="Pate1"
                     /gene_synonym="Pate"
                     /inference="alignment:Splign:2.1.0"
     exon            108..140
                     /gene="Pate1"
                     /gene_synonym="Pate"
                     /inference="alignment:Splign:2.1.0"
     exon            141..263
                     /gene="Pate1"
                     /gene_synonym="Pate"
                     /inference="alignment:Splign:2.1.0"
     exon            264..604
                     /gene="Pate1"
                     /gene_synonym="Pate"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaacctttcc acctccaaaa tgttcaagcc ccacttactg agatgcctga ccttactctg
       61 ctatttgagg gttttctttg ggtcgcttcc aggtgatgct aacaaacctg ataaagtact
      121 cattcatgaa aataacaatg ttgtggaaat tgtgcagtgc aggatgtgcc acctccagtt
      181 cccaggagaa aagtgcagca gaggtagagg aatatgtact gcaacagtag aagaggcctg
      241 catggctgga aaaatcttca aaaaggatgg taccatgtgg ttaaaattca tgggctgctt
      301 aaagaactgt gctaatgtga aaaaaataaa atggggcagc tatctggtgg acttcagatg
      361 ctgccggggc cacgacatgt gcaatgaaag gttttagaca cttctgtctt tctgtgctcc
      421 aacaatgtgt gtgatgggat ggcctctcta caaagacctc cggagtttaa ctctgcagaa
      481 aaggactgca aacacatggc tctgccttct acatgtcaca gggaaagcat tctttttcta
      541 gagtcccttc ttgtttcaaa accaattaaa agtgaataaa taaaatcctt ttttaccaat
      601 atca
//
