LOCUS       XM_039100341            3076 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PAS domain containing repressor 1
            (Pasd1), transcript variant X1, mRNA.
ACCESSION   XM_039100341
VERSION     XM_039100341.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100341.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3076
                     /gene="Pasd1"
                     /note="PAS domain containing repressor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:102554647"
                     /db_xref="RGD:7496877"
     CDS             69..2537
                     /gene="Pasd1"
                     /codon_start=1
                     /product="circadian clock protein PASD1 isoform X1"
                     /protein_id="XP_038956269.1"
                     /db_xref="GeneID:102554647"
                     /db_xref="RGD:7496877"
                     /translation="MERNTQQKMRRGASNTCQRPTHEDLRNLLKKLQKMMDRLGYGPS
                     RERFRGRPARYQAAIASTSSQRGMLRVRTNYEQNEVPVFNTYEEYHKMVLQSFENISI
                     VMNTDGKLIFVSQNVSPLLGHRPEDIMGKNLLNIVLDEQKDEVSEKIILNLPLANKVG
                     SLIEFCCYIRKGNVCPSALDRYRYRAMYQGRDTYEYVKFILYLQDSYDESFVFFGHYG
                     PNSRNIWSSAPRLLWEQQYYLVGNISVLRTPNESVQPVKVQTNVIVIESDDDNTIQPR
                     RLIKRRRRSKMQRHAQSEVVNVEEHPESGTEVEIVDVQPATQRMPFELVQVRTSSRSS
                     VSTDVSAATSLSAAVRTSTSTSSTDVTTTTPVSTPTSGLGYLMDPKNLLEPQDMEFEV
                     APEFLLNDSQEEQASTEQEECTEENVKKPLEELKGSISEDHGIDKDSAHHNVSSDDDC
                     CIIENVQEEKDPKIKEAVCQEQEHQKSPETTSSRPTTPLQAVRPEAVVEPIVRTDLRV
                     HGAEARRAYQFQRPLLGERFAQLCGPQVPTQVYDLTISRSFDDEPPSYTDIEEEERER
                     EQCEYELAQRIEMLRNLPYERPGQQQTGQGQGPRVYRPREQVVTVIDDVGPHAMNFFR
                     NDNSEHPRNGRRRHREDPAPPLLHHASRSCQELTASHQASAPSCQVSASSCQLPAASR
                     QASAPSCQISAPSCQLSAASRQASAPSCQISAPSCQVSAAACQASAPSCQISAPSCQV
                     SAEACQASAPPCQISAPSCQVSAAACQASAPPCQASASQQASTASSTMSHQASSDNRR
                     DNMPHFLHDHSGYSRAEENANPHP"
ORIGIN      
        1 gatacagtaa acataagacc acttgacttc aagtgagtgg taagaattca cctttacttg
       61 cctgaaacat ggagagaaat acacaacaaa aaatgaggag aggtgcctct aatacatgcc
      121 agaggccaac gcatgaagat ctgcgcaatt tgctgaagaa acttcagaaa atgatggatc
      181 gacttgggta tggaccatct agagagagat tcagaggacg gcctgcaaga tatcaggcag
      241 ctattgcatc tacatcttct caaagaggaa tgttaagagt acgcacaaat tatgaacaaa
      301 atgaggttcc tgtttttaat acctatgaag aataccataa gatggttctc cagtcatttg
      361 aaaatatttc aattgtaatg aacacagatg gaaaacttat ttttgtatcc cagaatgtgt
      421 cacctcttct tggccaccgt ccagaagata ttatgggaaa gaacctactg aatattgttc
      481 ttgatgaaca aaaggatgaa gtgtctgaga agattattct taatcttcca ttggcaaata
      541 aagtgggaag tctaatagaa ttttgctgtt acataagaaa aggaaatgta tgtccgagtg
      601 ccctggacag atatcgttat agggccatgt accaagggag agacacatat gagtatgtga
      661 aattcatctt gtacctacag gattcttatg atgagtcatt tgtatttttt ggacactatg
      721 gtcctaatag ccgaaacatt tggtcatctg ctccaaggct gttatgggag caacagtact
      781 accttgtggg aaacatttcc gttcttcgta caccgaatga gtcagtacaa cctgttaagg
      841 ttcaaacaaa tgttatagtt attgaatcgg atgatgacaa tactattcaa ccccgcaggc
      901 ttataaaacg acgccggagg agcaaaatgc aaagacatgc ccagtctgaa gttgtgaatg
      961 tggaggagca tcctgaatca ggcacagaag ttgagattgt agatgttcaa ccagccactc
     1021 agcgaatgcc atttgaatta gttcaggtca ggacatcctc tcgctcaagt gtaagcacag
     1081 atgtaagtgc agctacaagc ttaagcgccg ctgtgaggac aagcacaagc acttcatcta
     1141 cagatgttac aacaacaaca ccagtatcaa cccctacatc cggactgggg tatttgatgg
     1201 atccaaaaaa cttgctagag ccccaggaca tggaatttga agtggctcca gaattccttc
     1261 ttaatgacag ccaagaagaa caggcctcta cagagcaaga agaatgcact gaagagaatg
     1321 tgaagaaacc cctggaagag ttaaagggct ccatttctga ggaccatgga attgataaag
     1381 attctgcaca tcacaatgtt tcttcggatg atgattgctg tataatagaa aatgttcaag
     1441 aggagaaaga ccctaagatc aaagaagctg tgtgccaaga acaagaacat caaaagtcac
     1501 ctgaaactac ctcatcacgt ccaaccacac cattacaggc agtgcgccca gaggctgtgg
     1561 tggaacccat agtgcgcaca gatttgcggg tacatggtgc tgaggcaagg agagcatatc
     1621 aattccagcg tccacttttg ggggaaaggt ttgcccaact ctgtggacca caagtgccaa
     1681 cacaggtcta tgatttgact ataagcagat ccttcgatga tgaaccacct tcttacacag
     1741 atattgaaga ggaggaaagg gaacgagaac aatgtgaata tgagttggct cagcgtattg
     1801 agatgcttcg aaacttacca tatgaacggc cggggcagca acaaactggg caaggacaag
     1861 gacctcgtgt atatcgtcca cgagagcagg tggtgactgt tattgatgac gtggggccac
     1921 atgccatgaa tttttttaga aatgacaact ctgagcatcc acgaaatggc agacgtagac
     1981 atcgggagga tcctgctcct ccacttctgc atcacgcatc aagatcatgc caagaattaa
     2041 cagcatcaca tcaagcttct gcaccatcat gccaggtatc tgcatcgtca tgtcaattac
     2101 ctgcagcttc acgtcaagca tctgcaccat catgccagat atctgcaccg tcatgtcaat
     2161 tatctgcagc ttcacgtcaa gcatctgcac catcatgcca gatatctgca ccgtcatgtc
     2221 aagtatctgc agcagcatgt caagcatctg caccatcatg ccagatatct gcaccgtcat
     2281 gtcaagtatc tgcagaagca tgtcaagcat ctgcaccacc gtgtcagata tctgcaccgt
     2341 catgtcaagt atctgcagca gcatgtcaag catctgcacc accgtgtcaa gcatcggcat
     2401 cacagcaagc atcaacagca tcatcaacaa tgtcacatca agcctcctct gacaaccgaa
     2461 gagacaacat gccacacttt ctgcatgatc attctggtta ttctcgtgct gaagagaacg
     2521 ccaatcctca cccatgaggg gaagatgagg ctgaagacag accttcatgg tctgtgtggg
     2581 aaagggacat acaaaatggg aagagtccct tgatgggaga gggtgggtgg gttacatttc
     2641 tttacttgca aattgagttt gtacttattt cttaagcata gtcacttgct ttgaaacaat
     2701 gctgcagaag tagactgtga catccaactt gatgtgtcat aacaagtatt cactggcccc
     2761 tgcttgtcca acactatgtg gtgtatgtgt atatccatat gtgctttctt tgtggcaagc
     2821 tgactttagt gggcagaata tcagggccct atatagtttt cttgacaaaa ttaaaaatac
     2881 cacagaactg tgcaatgcaa ggggaaagct gttccatcat gccctttccc caaattctgg
     2941 ggccttgttt ttttatttat ttctacgtct cttctgcatc tccgtgatac ttgataacgt
     3001 atgttaaatt gtatccaatt gggagaaact aatatctgct caaaatagtg aacatcttta
     3061 cttaataaat actatg
//
