LOCUS       XM_039079612            3575 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus parvin, beta (Parvb), transcript
            variant X3, mRNA.
ACCESSION   XM_039079612
VERSION     XM_039079612.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3575
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3575
                     /gene="Parvb"
                     /note="parvin, beta; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 79 ESTs, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 21 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362973"
                     /db_xref="RGD:1311485"
     CDS             105..1043
                     /gene="Parvb"
                     /codon_start=1
                     /product="beta-parvin isoform X3"
                     /protein_id="XP_038935540.1"
                     /db_xref="GeneID:362973"
                     /db_xref="RGD:1311485"
                     /translation="MAPALVDIHPEDTQLEENEERTMIDPTSREDPKFKELVKVLLDW
                     INDVLAEERIIVKQLEEDLYDGQVLQKLLEKLAHCKLNVAEVTQSEIGQKQKLQTVLE
                     AVQDLLRPHGWPLRWNVDSIHGKNLVSILHLLVSLAMHFRAPIHLPEHVTVQVVVVRK
                     REGLLHSSHISEELTTTTEIMMGRFERDAFDTLFDHAPDKLNLVKKSLITFVNKHLNK
                     LNLEVTDLETQFADGVYLVLLLGLLEDYFVPLHNFYLTPDSFDQKVHNVAFAFELMLD
                     GGLKKPKARPEDVVNLDLKSTLRVLYTLFTKYKDVE"
ORIGIN      
        1 tagcttactc ttaggaggtg cccgggtgag cttctgaagt catagcttcc ctctgtgact
       61 tgaccgactt gcaggaagaa ggcaagagcg ccatcaattc tccaatggcc ccggctttgg
      121 tggacattca ccctgaagac acccagctag aggagaatga ggagcgcacc atgatcgatc
      181 ccacctctag agaagacccc aagttcaagg agttggtcaa ggtgcttctg gactggatca
      241 acgacgtgct ggcagaggag cgcatcattg tgaagcagct ggaggaggac ctgtacgatg
      301 gccaggtgct acagaaactt ctggaaaagc tggcacactg caagctgaat gtggcagagg
      361 tgacgcagtc tgagatcggg cagaagcaga agttgcagac agttctggaa gccgtgcaag
      421 acctgctccg gccccacggc tggccgctgc gttggaatgt ggactctatc cacgggaaga
      481 acctggtgtc cattctgcac ctcctcgtct ccctggccat gcacttcagg gcccccatcc
      541 accttcctga acacgtcacc gtgcaggtgg tggtcgtccg gaagcgggaa ggcctgctgc
      601 actccagcca catctcagag gagctgacca cgaccacaga gatcatgatg ggccggtttg
      661 agcgggatgc cttcgacacg ctcttcgacc acgcgccgga caagctcaac cttgtgaaga
      721 agtctctcat cacgtttgtg aacaaacacc tgaacaagct aaacttggag gtcactgacc
      781 tggagaccca gtttgcagat ggtgtgtacc tggttctact cctgggcctc cttgaagact
      841 actttgtccc cctccacaac ttctacctga ctcctgacag ctttgaccag aaggtgcaca
      901 acgtggcctt tgcctttgaa ctgatgctgg acgggggact caagaagccc aaggcacgcc
      961 ctgaagacgt cgtgaacttg gacctcaagt ccactctgcg ggtcctttac acactgttca
     1021 ccaagtacaa ggacgtcgag tgacagagca gccggttctt cagggacaag ttttagacaa
     1081 gaaaaaaatg gtcgtgtcca tccacagtcc ctgatttccc aggaaccgtc tcctcaggga
     1141 ggcctcaggc ttcccaggtc tagctgtgta atgcctctgc tctctgctcc ctgcctggtt
     1201 tggttttaaa cccttttccc ttgtggttcc ctagctgatt agatcattga gaacttggtg
     1261 cttcaaacac ccactccagt ttgaggcctc acttcctctt tttctctgcc tcccctgaag
     1321 atgaaagaga acaaaggccc agcctagccc tcagctggaa agggctgtcc acctgtgctc
     1381 caacccacgg agcaattaca gcaacagccc tggctccagg gactccgccc catttgtcct
     1441 caggaatccc ctgggctggg ctctccctgg aagcagggtc tcgcctcagt aaaaagatcc
     1501 tctcgggttt ttttctttcc tgaatctcag aagatttaga ctcctgacat gtgtctccac
     1561 ccccatcctg tcttgcggtt tgctgatttt taactgacct tttacatgaa ctctcaggac
     1621 ccagaatgcc ttggggcccc agggcagctt gtacaagggc atgtctgggt ctcttgctgg
     1681 ctctgaacat gcagcttgag ccggctcgga gttggaacct tccatctctg aggccctgtt
     1741 agggaatgga tacattttta gagactttac aagagggagg gaatccatta tgagggctgc
     1801 ctgaccacag gctaccggca gccagaatta cagaggcgtg cgtctggcag ctctggaggc
     1861 tgagagtagg agacagaggt gctggcaggt tgcctctctc tgccttcaca ccattcctcc
     1921 tcctgtatta gtctcctctt catttcgaag tggaaccatc ccctgtatga ccttgatgac
     1981 cccatgatat ctgcaagacc cccgtctcca agtgcagcct ccctccaacc agccaggagt
     2041 aggtttgtgg ggtgtgtctt aactggcagt gggacatacg aaatgcccac atccctcata
     2101 gatgctgctg gcatcctctg caacacagcc tatgagagaa aaccctgttg ctcctcaagc
     2161 cattcatcac tcactcccct tgactctgga ggtgggctgg ctcttgtctc aggaatcctg
     2221 cttctatggt tcactccccc tctcatgata ctcctccctc tcacctgcca tatgacagga
     2281 tccgtgcagc tacagggagc cttcctttcc tgatccccac cttaccacaa accggggctg
     2341 tagggtgagg tgttgatact gaactgaaca ccaacagtga agttccagaa aacagtttaa
     2401 tgtctcccct tgcttccgct gttgctaagc tggggacagg gcttggaata gccgctctgg
     2461 tgaaggaggc ttcccagtag gggagagaga taattaaaac ggcattaccg tgtctccccg
     2521 tgggatgcgg tgacattaaa gagccacact gacaaaatat ccgggactgg aaggttctgt
     2581 gccgctttcc tcacaggctc ggaaccactg cagcatctgg gagctgctgg gtccggtttg
     2641 ttctgctcac aggtggtttg gggcggggag cttggtgctg ctgaagggaa ggattgtcct
     2701 gggaagggtg gtggttctct gggattccct atctggagga cacatgtccc ccttggaacc
     2761 caagcaggct cctctgcctg gtcctgtctg caggactcgg gaagccaggg ttccatgaag
     2821 gcgtgacctt ccccattgac tgagcatgga agtgtggttc ttacacacca gcgaagggct
     2881 gtcctcgctg tctcttccta tggagttggc attcaaacca tagtctggac aaaggcacca
     2941 ataagtaaga tttctaggcc aactccaggg tcacccatgt aaggcaaggc tttcttgaca
     3001 gaaaaaaggg agtaccccct ccatgtaacc agtgcccacc cccaaacttt cccacagttc
     3061 tccctggggt cccctggaat gcaaaaacct ctctttgagc tgctaattca aggaagttct
     3121 ggaactttct actgcttgga tcttcattct cttctgatac tgtttgtttg aagagaggtc
     3181 tggtcaatga aactggtaga aatgtcatca tctgtcactc ccttggggtc ttgaggaagg
     3241 gacaggcagg tctgcattcc tgcccccagg tctgcaggcc aaggctggag ctgctccctt
     3301 ttgtcctgta ctgattggcg catcccctcc agctctccag acctctgtgg acctccaggc
     3361 agctctcgtg cccactttgc acccagtcgt gcaagccctg agctcacggg cccctgcatc
     3421 ctcatcgcag gccaaccaac aaagggggaa tcttatatcc aagcagccaa atcggtgacg
     3481 cccccctgtg cagtaatact tcattgtctt tttaattgtt tgaagcaacg tgtcctttgg
     3541 atttctggat attaaataaa aaccactaaa ccccc
//
