LOCUS       NM_001401237            4252 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus PARP1 binding protein (Parpbp), transcript
            variant 2, mRNA.
ACCESSION   NM_001401237 XM_006241188
VERSION     NM_001401237.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4252)
  AUTHORS   Moldovan,G.L., Dejsuphong,D., Petalcorin,M.I., Hofmann,K.,
            Takeda,S., Boulton,S.J. and D'Andrea,A.D.
  TITLE     Inhibition of homologous recombination by the PCNA-interacting
            protein PARI
  JOURNAL   Mol Cell 45 (1), 75-86 (2012)
   PUBMED   22153967
REFERENCE   2  (bases 1 to 4252)
  AUTHORS   Borsu,L., Presse,F. and Nahon,J.L.
  TITLE     The AROM gene, spliced mRNAs encoding new DNA/RNA-binding proteins
            are transcribed from the opposite strand of the
            melanin-concentrating hormone gene in mammals
  JOURNAL   J Biol Chem 275 (51), 40576-40587 (2000)
   PUBMED   11006283
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Feb 4, 2022 this sequence version replaced XM_006241188.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-104               JAXUCZ010000007.1  24461053-24461156   c
            105-260             JAXUCZ010000007.1  24457538-24457693   c
            261-491             JAXUCZ010000007.1  24446658-24446888   c
            492-596             JAXUCZ010000007.1  24441948-24442052   c
            597-767             JAXUCZ010000007.1  24429603-24429773   c
            768-922             JAXUCZ010000007.1  24428139-24428293   c
            923-1103            JAXUCZ010000007.1  24416212-24416392   c
            1104-1282           JAXUCZ010000007.1  24409828-24410006   c
            1283-1364           JAXUCZ010000007.1  24408485-24408566   c
            1365-1500           JAXUCZ010000007.1  24402060-24402195   c
            1501-4252           JAXUCZ010000007.1  24398897-24401648   c
FEATURES             Location/Qualifiers
     source          1..4252
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..4252
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /note="PARP1 binding protein"
                     /db_xref="GeneID:100310874"
                     /db_xref="RGD:2314264"
     exon            1..104
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            105..260
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..1829
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /note="isoform 2 is encoded by transcript variant 2;
                     PARP-1 binding protein; antisense RNA overlapping MCH gene
                     protein; PCNA-interacting partner"
                     /codon_start=1
                     /product="PCNA-interacting partner isoform 2"
                     /protein_id="NP_001388166.1"
                     /db_xref="GeneID:100310874"
                     /db_xref="RGD:2314264"
                     /translation="MAVLNQMSVLDMIKAFRRNWRAHCNSERTTLCGPDSMLLALQLS
                     MAENNKQHHGEFTVCLSDVLLTWKYFLHEKLNLPIENMKVVDHYEDIRKTYDDFLKNS
                     NTLDLIDVYKKCSIMTSNCEKHMISSIQLRDFLSGTECAVNDENNPHSPASPVKCSQN
                     DKQVRLLAKKIFLSYLSLLVNSKNDLALAQILNTPDRGLGREAFTNLKHAAREKQLSM
                     FLMATSFIRTLELGGKGYAPPPSDPLWAHVKGLSAFVNFIDKLNEILGEVPNPSLAGG
                     RILSAIRTQLIKGHSSGEPFYKAVEEVVQDLNLRIKNIINSQEGVTVSATNISPVPPK
                     SFAINHDTAYCGRDAVKILLVLLDEDAASAPTRNKAELLYNDQSTAPHGGASVLTLFR
                     SPTQVKSTPVKPLRERIHTSLQAEKNKQMRQTLIRSQFACTYKDDCIMSKSKWNVNSS
                     SKPLSALRLENDVSEGAQPSVGKARLETSSENVHVDRSKDDKGPRKSTKRKLAKSKQP
                     GVREDIHCDQGDELYQPKNVKILKVPSDSHRKAGGKLAPGARGNRCTTKDKLIPGQTK
                     LTRFFML"
     exon            261..491
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            492..596
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            597..767
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            768..922
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1103
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1282
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            1283..1364
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            1365..1500
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..4252
                     /gene="Parpbp"
                     /gene_synonym="AROM; PARI"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgccttcccg catcttggct gcgctgctcc tctctggacc tgcagcccct gggtcgccgg
       61 actaggtgga tctcgacttt tctctgccct ccagcggcat cgtgagaatg gctgtgctta
      121 atcagatgtc cgtcttggat atgattaaag catttagaag gaattggcgt gctcattgta
      181 actctgaaag gacgacgcta tgtggtccag actccatgct cttggcactg cagctgtcca
      241 tggcagaaaa caacaaacag catcacggag aattcaccgt ctgtctcagc gatgtcttac
      301 tgacgtggaa atacttctta cacgagaaac tgaacttgcc cattgaaaat atgaaagtgg
      361 tcgaccacta tgaagacatt aggaaaacat acgatgattt cttgaagaat agcaatacac
      421 tagatctgat tgatgtttat aaaaaatgta gcatcatgac ttctaattgt gagaaacaca
      481 tgatatcctc tattcaacta cgggactttc tatctggcac agagtgtgca gtaaatgatg
      541 aaaataatcc tcatagccca gcgtcaccag tgaaatgcag ccagaatgac aaacaggtgc
      601 ggctgttggc aaagaaaatt ttcctttcgt atttgagcct cttagtgaat tcaaagaatg
      661 acctggctct ggctcaaatt ctcaacaccc ctgaccgagg actgggaagg gaggccttca
      721 ccaacttgaa gcatgctgcc cgagagaaac agttgtctat gtttctgatg gccacatcat
      781 ttattaggac gttagagctc ggagggaaag gatatgcacc cccaccatca gatcctctgt
      841 gggcacatgt aaaagggctg tctgcttttg ttaatttcat tgacaagcta aatgaaattc
      901 ttggagaggt accaaatcca agccttgcgg gcggtcggat attatcggcg ataaggacgc
      961 agctgatcaa aggccacagc agcggggagc ctttttataa agcagtagag gaagttgttc
     1021 aggatttgaa tttgaggatt aaaaatatta ttaattctca agaaggtgta actgtcagcg
     1081 ccaccaacat cagtcctgtc ccgccaaaat cttttgccat aaaccatgat accgcatact
     1141 gtggaagaga tgctgtgaaa attttactgg ttcttttgga tgaagacgca gccagtgctc
     1201 ctaccagaaa taaagcagag cttctgtaca atgaccaaag tacagctcct cacggtggag
     1261 cgtctgtcct tacactcttt aggtctccca cacaagtgaa aagtacacca gttaaacctc
     1321 tcagagagcg aatccacacg tcactgcaag cagagaaaaa taagcagatg aggcagacat
     1381 taattagatc acagtttgct tgtacttata aagatgactg cataatgagc aagagtaaat
     1441 ggaatgttaa ttcctcatca aagccgctgt ctgctcttcg cttagagaac gatgtctctg
     1501 agggagcaca gccgtctgtt gggaaagcca gacttgaaac gagttctgaa aatgtgcatg
     1561 tggacagaag taaggatgac aaaggaccga ggaagtctac taaacggaag ctagcgaaga
     1621 gcaagcagcc gggtgtcagg gaggatattc actgcgatca gggagatgag ctgtaccaac
     1681 ccaagaatgt taagatcctt aaagtgccca gtgactctca caggaaagct ggtggcaaac
     1741 tagccccagg agcaaggggc aacaggtgca ccaccaagga caagctgatc cctggccaga
     1801 ccaagctgac acggtttttt atgctataat ttttcctctc catgctttag atttaggtat
     1861 acaagatcat tccccaaagc cgtgagctaa tgtttgaaat ctgaagatgt aattttttgt
     1921 ttcttatgaa tgctttcacc tttgtttctc aatatatctg tgatgcacac agttcacagg
     1981 taacattgtt tagtgactta ggtgggtttt acacatagac ctgtgtggac tgaaggatct
     2041 ttatttagct cagcttccaa caaaccaaag agggtgccca gagggtgctc acccacattt
     2101 tcaatgccct ctattcctct gggagggcaa tgactcctta agatgtaagg agagagaatc
     2161 tctttttgag atccagttgg ttatttataa tggtcaattg tagatggctc tccctcattt
     2221 cttgaatcag cttctgggta ctgggcttaa ctcccacata ttaacttcaa cctgagtgtt
     2281 tgaaggaggc aaatttcaag tttcaaggct ccatagaaca tcttaattac atttcccaag
     2341 atgttctatt gtgatgcttt aatattttga tacatgtatg tgaggctcac atattaacca
     2401 ctgtcaaaaa ataccagtaa gtcagaatta tgcagaattt ttgtgaagtt taatgcacaa
     2461 gtcaaagcat atcatttaca tagcatttac atattgtaac cagtttcttt taaaacagac
     2521 atttaggatg atacacaagt tacatcaaca ttaagggctt ttctctccac ttgcaatgaa
     2581 tcgttttctt ctgaaaggat gttgtggacc agcaggtatc agacttgcca acagggtcgg
     2641 tagactcgtc ccagcataca cctgagcact gaaaaggaac aaacaatgac tataattacc
     2701 acacagaatt aagagaatct gtggacttat aatgaatcca gaataaaaca aaccactatt
     2761 actgattttg aaaaattccc cattttgacg tgggctgcct actatttgat agaactgaac
     2821 tatggtcttg attttgttat ggtcagatcc aactcagtga agctcagagc tcttttataa
     2881 aattaatatg taggaattgc atgtttagaa ggctactcac tgtcaaaatc tctccttcct
     2941 atgggaaatt tagctgagtt ttcttcatcc ccaatttccc tcttttcctg tgtggactca
     3001 gtattctgaa ctccattctc agctgggaag actgctggtc ctttcagagc gaggtaaggt
     3061 tttacagcca gactgagggg cagaccgtga gttacgagat tctgcttgga gcctgtgttc
     3121 tgtgaagaga agattggttt gtatcccagc tgtcttcttc agagtagagc tagaatacag
     3181 ttgtacaaca ttcttgctga tcagttctaa gatgctgtat actgtcttta cctccatatg
     3241 cgagacaaga tacaagattc tggatagaat ggggaaatgc ctggtttgta tgacgttttc
     3301 ctagttatct taatacacac aatgactgta tgtatgccta tttataaaat taaaatacaa
     3361 aatttacttc tgggtggctt ataattgtaa acatcgtttt catctctagt gcaataaaag
     3421 gcagactgca tacacgtacc tttgtggtct tgtcatcttc atccttcatg aagccgctct
     3481 catcattttt gtatccttcc agagaaggag caacaaccga tctttctgcg gtatcttcct
     3541 tctgaaaggc tttccccatc ctgaatgtat taaatactat gtcgtcttct acgttcctga
     3601 tggacttgga ggccgaaagt aaaatgccgt gagaaaacaa agaaaaggcc agcattaaca
     3661 tgtaggaaga gaggctcatc ttcgccatcc tgtttgctgc tccgtaaagc cgaaggagaa
     3721 tgtggggaga atgccacact ctgctggcga ctgaatgatt cctaccttta tatactttgt
     3781 gcctgaatag aaaacacttg aaggccttat cttttctttt tagaaatgaa tcaccccgta
     3841 gagcctcgcc tttgtaaagc tgctaatgct tgcattgttt tggatttagt ggcctgttgt
     3901 ttatttcgtg tgtgaatttt cccagaatct gattaaggtc tttgagagaa ggctttctgt
     3961 gagtagatta tagcctcttg aaagtgggat gttattaagg aagaccatag gacaccaggc
     4021 tctcccaata ttacagttac cttctatgta ctttccgatt aagatattaa gacgtgttat
     4081 ttaattcatg gataataagg ataaaagctt tatgcccttt taatccttat taaatagaag
     4141 ttatctctag aaaagagttt cctttataaa tacttgagaa tggtcttttg tgattaaagt
     4201 gcatgtgctt gtctgtataa acaataaaaa actattcata cttcatctaa aa
//
