LOCUS       XM_039093847            5928 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus poly (ADP-ribose) polymerase family,
            member 4 (Parp4), transcript variant X1, mRNA.
ACCESSION   XM_039093847
VERSION     XM_039093847.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001427093.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5928
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5928
                     /gene="Parp4"
                     /note="poly (ADP-ribose) polymerase family, member 4;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 25 ESTs, 4 long SRA reads, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 197 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:361046"
                     /db_xref="RGD:1310524"
     CDS             153..5573
                     /gene="Parp4"
                     /codon_start=1
                     /product="protein mono-ADP-ribosyltransferase PARP4
                     isoform X1"
                     /protein_id="XP_038949775.1"
                     /db_xref="GeneID:361046"
                     /db_xref="RGD:1310524"
                     /translation="MTLGIFANCIFCLKVKYLPRQQKKKLQTDIKENGGKFSFLLNPQ
                     CTHVIVDSADVLSRCHLNSIQKNDVQIANPAFIEDSVRQRRLLDVKNYDPMSPAGAAP
                     PAEKISSSELVLPSAHYVIHEVQIEDPPLDNTPEKENIEVVEVSAENVEIPPFLQDFE
                     VVKYNVLKKMGADGGPETVVVELQSSRDPGSSPFVIAAHFLLAEQKTRRASTGKQTSK
                     GAIEYYESYVEDLKRQGFLLQEHFTAEATQLASEKLQALLLEEVISSGTLSQEVTDFL
                     EVIWTEALGHLEHTLLKPVNSMSLNDVSKAEGILLLVKTALKNGDSLEQLRKTMAEFY
                     RLLPHRHPASEEVNLRLLAQKEDLCQLVRDMVNVCETNLSKPNPPSLAKYRALRCKIE
                     HVEENTEEFSRVRKEVLQSSRSEGPIDVLQIFKVGRVNEAMEFVSNLGNVQALFHGSP
                     VRNILGILSRGLLLPKVAEDRGVQRTDVGNLGSGIYFSNSLSTSIKYAHAGETDGSRL
                     LVICDVALGKCMDLFKKDFSLTEAPPGYDSVHGVSKTASVPTDFQDDEFVVYKTNQVK
                     MKYIVKFCIPGDQIKEFHPHENTELEEHRAELSNVPEVEDFQLPDVKSLKDVKAGLQD
                     ASANPVPLESVHIRGRIIDFVAQVIVFQTYTNQSHVPIEAKYIFPLDDKAAVCGFEAF
                     INGKHIVGEIKEKEEARQEYREAVSQGHGAYLMDQDTPDVFTVSVGNLPPRAKVLIKI
                     TYITELSIQSPVAIFFIPATVAPWQQNKALNENLQDTVETIRIKEIGAEQSFSLTMSI
                     EMPYMIEFISSDTHELRQKSTDCKAVISTVEGSSLDSSGFSLLIGLRDAYLPRMWVEK
                     HPEKESEACMLVFQPELADVLPDRREKNEVIICLDCSSSMEGVAFTQAKQIALYALSL
                     LGEEQKVNVMRFGTGYKELFSYPKCITNNKLATEFIMSAAPSMGNTDFWKVLRYLSFL
                     YPSEGLRNILLISDGHLQSESLTLQLVKRNIQHTRVFTCAVGSTANRHILRTLSQCGA
                     GVFEYFNSKSKHSWKKQIEAQMARIHSPSCHSVSVKWQQLSRDAPEPLQAPTCVPSLF
                     HNDRLLVYGFIPHCTQASLCAFIQEKEFCTMVSTTELQKTTGTMIHKLAARALIRDYE
                     DGILHDNETNHEMKKNIMKSLIIELSKENSLITQFTSFVAVEKRDVNEVPLANAPSIS
                     ELVAKEDVDFLPYVSWQEKQPETFTSQPFSISSEGNEELSLLTAAKKCKVKTRKMRNL
                     KVSEDFEGTPAMAQSPTTAQSDFHLPLSVCPQPVKLKKGRKFQKLRMADEPRKAPVSM
                     VSSAPAVTAGFSFLSARHSSSAFLSPLCNISLPPPPPPLPGTTASPPPPPPSLFGGTH
                     LPPPPPPPLPAGTHPPPPPSLFGGTHLPPPPPLPLPARTHPPPPSSLFGGNHPPLPPP
                     PPPGTQFSLSPVGFIPTNSCRPMSNYSHKLAKATDICDSEPPLRGFRGASPKDTSSRG
                     TGFRGGTFSDSFAGSKDFDPGKFSQDLNNIVSSPKAPELAATQRSPLRSPPKPLSVPP
                     LVVCEFSSELPQSHSFHFQSGSVHRSPNYRMSDMASLRSALSLDYSAWDCVLEEADSL
                     DGGSFETETDEAAAYTACEFLTSMETPSHEEFVIGDDEGRQSPVSWTSLFALQTEDGF
                     WKLTPELGLILKLNVNALLNSLEEKGIRSLGTKGRERLLDLIATLLVLQFLYTKLEQE
                     GMAAKSLIKMDDVLISRNIPWAFENIKKAREWARRTEGQYPSICQRLELGKDWESATK
                     QLLGIQHQGNTSLHRILHYSQG"
ORIGIN      
        1 agcataggtc cagggttcag gagactcagc cacggccccg ccctgacgcg ccccacctct
       61 cccggaagca cagaggctgg aacgctggct gtggggctcc gaggaaagga tcatccgacc
      121 ccaggaaggg ccaggaggga tctccaagca ggatgacttt gggcatcttt gcaaattgta
      181 tattctgctt aaaagtcaag tacttacctc gtcagcagaa gaaaaagctg caaactgata
      241 ttaaggaaaa tggcggaaag ttttcctttt tattaaaccc tcagtgcaca cacgtcatcg
      301 ttgacagtgc tgacgtcctg agccggtgtc atctgaactc catccagaag aacgatgtcc
      361 agatagcaaa cccagccttc atcgaggact cggtcagaca gcgcagactc ctggatgtga
      421 agaattacga tcccatgtcg ccggctgggg cagcgcctcc agctgaaaag atcagttcca
      481 gtgaactcgt cctgccgagc gctcactatg ttatacatga agtgcaaata gaagatccgc
      541 ctttggacaa caccccggag aaagaaaaca tcgaagtcgt tgaggtctct gcggagaatg
      601 ttgaaattcc tccctttctt caggactttg aagttgtgaa atataacgtc ttgaaaaaaa
      661 tgggagcaga cggaggccca gagacggtgg tggtggagct gcagagctcc cgagacccgg
      721 ggagctcccc ctttgtgata gcagcacact tcctcctggc tgaacaaaag acgagaagag
      781 cgagcactgg aaagcaaacc tccaaaggtg caatcgagta ttatgagagt tatgtggaag
      841 acctgaagag acaaggattc ctgctccaag agcacttcac ggccgaagca acgcagttag
      901 catccgagaa gctgcaggca ttgcttttgg aggaggtcat aagttcaggt accctgagcc
      961 aggaggtgac tgattttctg gaggtgatct ggacagaagc tctgggccac ctggagcaca
     1021 cgctcctcaa gccagtgaac agcatgagcc tgaatgacgt gagtaaagcg gaagggattc
     1081 tccttctggt aaagacagca ctgaagaatg gagactctct ggagcaactg cggaagacaa
     1141 tggccgagtt ctaccggttg ctgcctcaca gacatccagc ttcagaggaa gttaacctga
     1201 ggctgttagc tcagaaagag gacctttgtc agctggtaag agacatggtg aatgtttgtg
     1261 aaactaattt atccaaaccc aacccaccat ctcttgccaa ataccgagct ttgagatgca
     1321 aaatcgagca tgttgaagag aacactgaag aattttccag ggttaggaaa gaagtgttgc
     1381 agagcagtcg aagtgaaggc cccatcgatg tcttgcagat atttaaagtt ggccgagtga
     1441 atgaagctat ggagtttgtg agtaacctgg gcaacgtgca agccctgttc catggatctc
     1501 ctgtgcggaa cattctcgga atcttgtccc gagggctgct cttacctaag gtagcggaag
     1561 accgcggtgt gcaaagaaca gacgttggaa atctggggag cgggatctac ttcagcaact
     1621 cactcagtac gagcattaag tacgcacatg caggagagac agatggctcc aggctcctgg
     1681 tcatctgtga cgttgccctg ggaaagtgta tggacttatt caagaaggac ttttctttaa
     1741 ctgaggcgcc accaggctat gacagtgtgc atggagtttc gaaaacagcc tctgtaccca
     1801 cagactttca ggacgatgaa tttgttgtat ataaaaccaa tcaagttaaa atgaaataca
     1861 ttgttaaatt ttgcattcct ggagatcaaa taaaggaatt ccatcctcat gaaaacactg
     1921 aattagagga gcacagagct gagctctcaa atgttccaga ggttgaagat ttccagttac
     1981 cagatgtcaa gtccctcaaa gacgtcaaag ccggccttca ggacgcgtct gcaaatcctg
     2041 tccctcttga aagtgttcac atcaggggaa gaataataga ctttgtagcc caggtcattg
     2101 tttttcagac atacacaaat caaagccacg tgcctattga ggcaaaatac atcttcccat
     2161 tggacgacaa ggcagctgtg tgtggcttcg aggccttcat caacgggaag cacatagtgg
     2221 gagagataaa ggaaaaagaa gaagcccggc aggaataccg agaggctgtc agccagggcc
     2281 atggtgctta cttgatggac caggacactc cggacgtctt cactgtaagt gttggaaact
     2341 taccccctcg ggctaaagtt ctcatcaaaa tcacctacat cacggaactc agcatccaaa
     2401 gtcccgtggc catcttcttc atccctgcca ctgtagcgcc ctggcaacaa aacaaggcat
     2461 tgaatgagaa ccttcaggac acagtggaga cgattcgtat aaaagaaatc ggagcagagc
     2521 aaagcttctc cctgaccatg tccattgaga tgccctacat gattgaattc atttccagtg
     2581 acacacatga gctgagacaa aagagcacag actgcaaagc tgtaattagc accgtggaag
     2641 gcagctccct ggacagcagt ggattttctc tcctcattgg tttgcgtgat gcatatctcc
     2701 caagaatgtg ggttgaaaaa catccagaaa aagaaagcga ggcctgcatg cttgtctttc
     2761 aaccggagct ggcagacgtc ctccctgacc gccgtgaaaa gaacgaagtg attatctgtc
     2821 ttgactgttc cagttccatg gagggcgtgg cattcacaca agccaagcag atcgccctgt
     2881 atgctctgtc tttgctgggc gaggagcaga aagtcaacgt tatgcggttt ggcacaggtt
     2941 acaaggaact attttcatat cctaagtgca tcacgaacaa taaattggcc acggagttca
     3001 ttatgtctgc agcaccttcc atggggaaca cagacttctg gaaagttctc cgctatctta
     3061 gtttcctgta cccttcagaa gggttgcgga acattctcct catatccgat ggccaccttc
     3121 agagtgagag tctgaccttg cagctcgtga aaagaaatat ccagcacacc agagtgttca
     3181 cctgcgctgt tggttctaca gcgaatcgtc acatcctaag gaccttgtct cagtgtggtg
     3241 ctggagtgtt tgagtatttt aactcaaaat ctaagcacag ttggaaaaaa cagatagaag
     3301 cccaaatggc caggatacac tccccaagtt gtcactccgt ctctgtgaag tggcagcagc
     3361 ttagcagaga tgcccctgag cccctgcagg ctcccacgtg cgtgccctcc ttgtttcaca
     3421 atgatcgact cctggtctat ggattcattc ctcattgtac acaggcatcc ctgtgtgcat
     3481 tcatccaaga gaaagaattt tgcacaatgg tgtcaactac agagcttcag aagacaactg
     3541 ggactatgat tcacaagctg gcagcccgag ccctaatcag agattacgaa gacggcatcc
     3601 tccacgacaa cgaaaccaac cacgagatga agaaaaacat catgaaatct ctgatcatcg
     3661 aactcagtaa agaaaattct cttattacac aatttacaag ctttgtggca gttgagaaaa
     3721 gggacgttaa tgaggttcct ttggctaacg ccccaagtat ttcagaactt gttgccaaag
     3781 aagatgtaga ctttctacca tacgtgagtt ggcaggaaaa gcagcctgag accttcacat
     3841 cacagccctt ctccatctct tctgaaggga atgaggaact gtcactgctg actgctgcta
     3901 aaaaatgtaa agtaaagact agaaagatgc gtaatctaaa agtttccgaa gattttgaag
     3961 gaacgcccgc gatggcacag tcacccacaa cagcgcagtc tgacttccac ctgcctctca
     4021 gtgtctgccc acagccggtg aagctaaaga aaggaagaaa atttcaaaaa ctgcgtatgg
     4081 cagatgagcc tcgaaaggcg cctgtttcca tggtttcttc tgctccggca gtcacagctg
     4141 ggttttcttt cctttctgct cgtcattcca gttctgcctt cctatctcct ctctgcaaca
     4201 tcagtcttcc gcctcctcct cctcctctcc ctggtactac tgccagcccc cctcctcccc
     4261 ctccctctct ctttggtggt acccatcttc ctccccctcc ccctcctcct ctccctgctg
     4321 gcacccaccc tcctccccct ccctctctct ttggtggtac ccatcttcct ccccctcccc
     4381 ctcttcctct ccctgctcgc acccaccctc ctcccccttc ctctctcttt ggtggtaacc
     4441 atccccctct ccctccccct ccccctcctg gcacacaatt ttctctttct cctgtaggat
     4501 tcatcccaac taactcgtgt cgacctatgt ccaactatag ccataaactt gctaaagcta
     4561 cagacatctg tgactcagag ccacctctca ggggctttag gggtgccagc cctaaggata
     4621 cgagctctag gggtacgggc tttaggggtg gtactttctc tgatagcttc gctggttcaa
     4681 aggattttga tccaggtaaa ttttcccaag acctcaacaa catcgtctcc tctcccaaag
     4741 cccctgagct ggctgctact cagaggtcac ctttacgcag tcctcctaaa ccactttctg
     4801 tccctcctct agtcgtctgt gagtttagct ctgagcttcc ccagagccat tcttttcact
     4861 ttcaaagtgg ctcagtccac cggagcccta attacagaat gtcagacatg gcgtcacttc
     4921 ggtcagctct ctcattagat tattctgcgt gggactgcgt tctagaagag gctgactcac
     4981 tggatggagg ttctttcgaa acggaaacag atgaagcagc agcatataca gcatgcgagt
     5041 ttttaacaag tatggagact ccctcacatg aggaatttgt catcggtgat gatgaaggcc
     5101 ggcagagtcc cgtgtcgtgg acttcactct ttgctctaca gactgaggat ggtttttgga
     5161 aattgacacc agaactagga ctaatactaa aacttaatgt aaatgctctg ctcaattctc
     5221 ttgaagagaa gggcattcga tctctaggta caaaaggaag agagcgtctt ctggacctga
     5281 ttgccacttt actcgtactg cagtttcttt ataccaagtt ggaacaagaa ggaatggctg
     5341 ccaaatctct gataaagatg gatgacgtcc tcatttctag gaatattcca tgggcttttg
     5401 agaacataaa gaaagcaaga gaatgggcca gaagaacaga aggacagtat ccatctattt
     5461 gccaacggct tgagctgggt aaagactggg agtcagctac aaagcaacta ctgggaattc
     5521 agcaccaagg caacacttcc cttcaccgaa ttctacacta cagtcaaggc tgaagccaat
     5581 ggaattgcac tgtaaacctt tctcataaat cttttgttgc tcttttggtt ttgttttttc
     5641 aagacacggt ttctctgtga agccctggct gtcctggaac acactctgaa cagcaggctg
     5701 gcctcacatt caagggacct gctggcctct gcattccaag tgctgggttt aaaggtgtgt
     5761 gcaccactgc cctgctgcct ttctcatatt tagaaaataa tcaaatagta aaaggtatca
     5821 ataatgacat gtaatctgtt ttaagtgtag ctatcatctc ctttaaaata aaattaatgg
     5881 aaagaattga ttaatcattt aacgacaata aaagctgtaa gaactaga
//
