LOCUS       XM_039113303            6827 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus papilin, proteoglycan-like sulfated
            glycoprotein (Papln), transcript variant X1, mRNA.
ACCESSION   XM_039113303
VERSION     XM_039113303.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113303.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6827
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6827
                     /gene="Papln"
                     /note="papilin, proteoglycan-like sulfated glycoprotein;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 13 ESTs, 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:314297"
                     /db_xref="RGD:1311176"
     CDS             25..4011
                     /gene="Papln"
                     /codon_start=1
                     /product="papilin isoform X1"
                     /protein_id="XP_038969231.1"
                     /db_xref="GeneID:314297"
                     /db_xref="RGD:1311176"
                     /translation="MLASAQGCGYSGYPAPMPADSHRFFYCDAALGLQLLEPGCSERL
                     QKLERVGTEMQLLLLLSLLLLLASTPGSWAQNVRRQSDTWGAWGEWSPCSRTCGGGIS
                     FRERPCYSQRRDGGASCVGPARSHRTCHTESCPDSVRDFRAEQCAEFDGTDFQGRRYR
                     WLPYYAAPNKCELNCIPKGQNFYFKHRDAVVDGTPCEPGKRDICVEGVCRVVGCDHKL
                     DSTKQEDKCLQCGGDGSSCYPITGTFDANDLSRGYNQIFIIPAGATSIHIEEADASRN
                     FLAVKSIRGEYYLNGHWTIEEAQALPVASTVLQYERGVEGDLAPERLQARGPTSEPLV
                     IELIIQESNPGVHYEYYLPVNDPGRSFSWSYGSWGDCSAECGGGHQSRLVFCTIDNEA
                     YPDHMCQHQPRPAHRRSCNTHPCPKTKRWKVGPWTPCSVSCGGGFQSRSVYCVSSDGT
                     GGQEAAEETQCAGLAGKPPTTQACNLQRCAVWSVEPWGECSVTCGAGIRKRSVTCRGD
                     EDSLVHPAACSLKDQPTLTEPCVREACPGFRGQAWHVGSWSLCSKSCGSGIRRRQVVC
                     TIGPPGRCVDLQSSKPAEVEACNRQPCHLPQEVPSIQDSRTHPSDRRMLSGPQVSPVA
                     DARDQQWATLERPRAQSNPREGQDSHLSSAGRAPTLQHPPHQPPLRPSSGARDCRHSP
                     HGCCPDGHTPSLGPQWQGCPLAGASCLKSRYGCCPDGVSAAKGPQQAGCTRSHSSDNT
                     GNRPGSRAVVSKDPKIHQSQAHPSEISECRSSQFGCCYDNVAFAAGPLGEGCVGQPSY
                     AYPVRCLLPSAQGSCGDWAARWYFVGSVGRCNRFWYGGCHGNANNFATEQECMDTCRG
                     QHGPRRPEAGAAGHRVHMDGGQRGPGGQQEPDWHRIEATVPRLPSPSGSPWSREQEPG
                     PGQAPHIPAQGKRPRVPGLDRDARPPVRPTHSPSYRINLADSEPSLVQAAPGQAVQLF
                     CPGNIPPEFQAGWQKEGRPISSNRYQLQADGSLIISPLRPEDAGIYSCGSQRSGHEPQ
                     KIQLRVTGGDMAVLSEVQPRHFPETRNPDPGHSPQNRGIGVGAEGHRVLSSSHPRPAT
                     RLRLDRTQPGVIDASPGQQIQLTCHAEGFPVPTIEWQRDGQLVSSPRHQVQHDGSLVI
                     SRVTVEDGGFYTCVAFNGHDRDQRWVQLRVQRELTITGLPPAMTVPEGDTARLLCVVA
                     GDSVNIRWSRNGLPIQADGHRVHQSPDGTLLIHNLRPRDEGSYTCSAFRGSQAVSRST
                     EVKVALPAAPAAQSRDLGKDCIDQPELANCALILQAQLCGNEYYSSFCCASCSRFQPN
                     AQPGWQQG"
ORIGIN      
        1 ggagcggtaa gagcatacac cttgatgcta gctagtgccc agggctgtgg ctacagtggt
       61 tacccagccc caatgccagc tgattcacac agattttttt actgcgatgc tgcgttagga
      121 ctgcagctgc tagaaccagg atgcagtgag agacttcaaa aactggaaag ggttgggaca
      181 gagatgcagc tgctccttct cctgtccctc ctgctgctgc tggcctccac gccagggtct
      241 tgggctcaaa atgtgaggcg ccagagcgac acctggggcg cctggggcga gtggagcccc
      301 tgcagccgga cctgtggagg aggcatcagc ttccgggagc gcccttgcta ctcccagagg
      361 agagacggag gcgccagctg cgtgggccct gcacgcagcc accgcacctg ccacacggag
      421 agctgcccag acagcgtgcg ggacttccgg gcagagcagt gtgcagaatt cgatggcacc
      481 gacttccagg gtcggcgcta ccggtggctg ccctactacg cagcccccaa taagtgtgag
      541 ctgaactgca ttcccaaggg gcagaacttc tacttcaagc acagggacgc tgtggtggac
      601 gggacaccct gtgaacccgg caaacgagac atctgtgtgg aaggcgtctg ccgagtcgtt
      661 ggctgtgatc acaagctgga ctcaaccaag caagaggaca agtgtctgca gtgtgggggc
      721 gatggttcgt cctgctaccc aatcacagga acctttgatg ccaatgatct cagcagaggt
      781 tacaaccaga tcttcatcat tcctgctggg gccactagta ttcacatcga ggaagctgat
      841 gccagcagga atttcctggc cgtgaagagc atccgcggcg agtactacct caatgggcac
      901 tggaccattg aggaagccca ggctcttccg gtggccagca cagtcctaca atacgaacgg
      961 ggtgtggagg gagacctggc tcctgagcgg ctccaggcac ggggtcccac ctcggagccc
     1021 ctagtcatcg agctcatcat ccaggaatcc aaccccggag tacactacga gtactacctg
     1081 cccgtgaacg accccggccg aagctttagt tggagctacg gctcctgggg tgactgcagc
     1141 gctgaatgcg gtggaggtca ccagtcccgc ctggtattct gcaccatcga caacgaggcc
     1201 tatccggacc acatgtgcca acaccagcct cggccagccc accgacgttc atgtaacact
     1261 cacccttgtc caaagaccaa gcgctggaaa gtaggaccat ggacgccctg ctcagtctcc
     1321 tgtgggggtg gattccagtc tcgctctgtc tactgcgtgt cctcagatgg cactggtggc
     1381 caggaagctg ctgaggagac ccagtgtgct ggcctagctg ggaaaccccc taccacacag
     1441 gcatgcaacc tgcagcgctg tgcagtctgg agcgtggagc cctggggaga gtgctcagtt
     1501 acatgtggag ctggcatcag gaagcggagt gtcacatgcc gaggggacga agactctctg
     1561 gtccaccccg cagcatgctc cttgaaggac cagccaaccc tcacagagcc ctgtgtgcga
     1621 gaggcctgtc ctgggttccg tggccaggcc tggcatgtcg gctcgtggag tctatgctct
     1681 aaaagctgtg gttccggcat tcggagacgg caggtcgttt gtaccattgg gccgcccggt
     1741 cgctgtgtgg acctgcagtc gtccaaacct gcagaggtag aagcctgcaa cagacaaccc
     1801 tgccatctcc ctcaggaggt ccctagtata caggactcga ggacccaccc ctcagaccgc
     1861 aggatgctgt caggccccca agtgtctccc gttgcagatg ccagagacca gcagtgggct
     1921 accctggaga gacccagggc tcagagtaac cccagagagg gtcaggactc ccacctgtca
     1981 tctgcaggcc gggccccaac cctgcagcat ccgccacacc agccacccct gaggcctagc
     2041 tcaggggccc gtgactgcag acacagcccc catgggtgct gccctgatgg ccacacacca
     2101 tctcttgggc cacagtggca aggctgtccc ctggctgggg cctcatgtct taagagcagg
     2161 tacggatgct gccctgacgg agtgtctgca gctaaggggc cccaacaggc tggttgtacc
     2221 aggtctcaca gcagtgacaa tactggaaac aggccagggt ccagggcagt agtttccaag
     2281 gaccccaaga tccaccaatc tcaggcccat ccaagcgaga tcagcgagtg tcgaagctct
     2341 cagtttggct gttgctatga caatgtggct tttgcagctg gtcctctggg ggaaggctgt
     2401 gtgggtcagc ccagctatgc ctacccagtg cggtgtctgc tgcccagtgc tcaaggttcg
     2461 tgtggagact gggctgcccg ttggtacttt gtgggatcag tgggccggtg caaccgcttt
     2521 tggtatggcg gttgccacgg gaacgccaat aactttgcta cggagcagga atgcatggac
     2581 acctgccggg ggcagcatgg gccccgccgc cctgaggcag gagcagctgg acatcgtgtc
     2641 cacatggatg gtggtcaacg tggtcccgga ggccagcagg aacctgattg gcacaggata
     2701 gaagccacag tcccgagact gccctcacct tctggaagcc cttggtcgag agaacaagag
     2761 cctggacccg ggcaggcgcc acacatccca gcccagggga aacggcccag agtccctgga
     2821 ctggatagag atgctaggcc accagtgcgg cctacgcaca gcccctccta caggatcaac
     2881 ttggcagact cggaaccgtc cctggtacag gcagctccag ggcaggcggt ccaactcttt
     2941 tgccctggca acatcccccc ggaattccag gcagggtggc agaaagaggg ccggcccatc
     3001 tcctctaaca ggtaccagct acaggcagat ggctccctca tcatcagccc cttgaggcca
     3061 gaagatgctg gcatctatag ctgtggcagc cagaggtcag gccatgagcc ccagaagata
     3121 cagcttcgag tcacaggggg tgacatggca gtgttgtctg aggtccagcc gaggcatttc
     3181 cctgagacca ggaatccaga ccctggtcac agtcctcaga accgtggaat aggagtggga
     3241 gctgagggcc acagggttct ctcttcctca caccctaggc ctgccacaag gctacgtctg
     3301 gaccggactc agcctggagt gatagatgcc agtcctggcc agcagatcca gctcacctgc
     3361 catgctgaag gcttcccagt ccccaccatt gagtggcaaa gagatgggca gctggtctct
     3421 tctcccaggc accaggtgca gcatgatggc tctctggtca tcagccgagt gactgtggaa
     3481 gatggtggct tttacacctg tgttgctttt aatgggcatg accgagacca gcgctgggtc
     3541 cagctcagag ttcagaggga gctgacaatc acaggcctgc ctcctgccat gacggtgcca
     3601 gagggtgaca ctgccaggct tctgtgtgtg gtggctggag acagtgtgaa cattaggtgg
     3661 tccaggaacg gactgccaat acaggctgat ggccaccgtg tgcaccagtc cccagatggc
     3721 acactgttga tccacaactt gcggcccagg gacgaaggct cttacacatg cagtgccttc
     3781 cgtgggagcc aggctgtgag ccgcagcact gaggtgaagg tggctctccc agcagcaccg
     3841 gccgcacagt ccagggacct aggcaaggac tgcatcgacc agccggagct ggccaactgt
     3901 gcgctgatcc tgcaggccca gctctgtggc aatgagtatt actccagctt ctgctgtgcc
     3961 agctgctccc gcttccagcc gaacgcccag cccggttggc agcagggatg aaggctggct
     4021 gtgcaccagt tctggatagt ttgctgggag aagggatggt aagacatggc ttgcagaggg
     4081 agtcatcttt cagatatcca gggttgagcc ccagcagctg ccagtgctgg cctcccctct
     4141 agtgctcagc agtgtctgcc tgatgtgacc acgggctgct gtgagaagag gaacccttta
     4201 caccttccct ctctagtttc tgctgcatcg aggacctttt atccgaaatg ctttggacca
     4261 aagtgtttta aacttgtaga ctttactaat tgagcatccc taacctacga ttctgaattg
     4321 ctctgaagct tgaagcaccc aaatgccatg tcagccttca aaactgtctg ggtttcaaag
     4381 cacgcttggt tttgggtgag ggatgctcaa tttgtcctga ggatctactc accactgtag
     4441 agcagctggg tgggatgtct gtgacgggag ggagtgggga ctgctctgtg ggtcagtggg
     4501 gagcagtcac tcaggccttt tcatcttcct ggcagtggca cagccgcctt caccaccatc
     4561 gctgtggagc tcacagtgta agcttgggaa agcactcagc aaggcagaat aaccaccagg
     4621 cctcagtgca gggaggcggg atggaaaacc agagagcctg ataatctgtg tgtctctgtg
     4681 aaaaactggg aaagaactac actgcaggga cacaacctcc aggggttcct gagaggcagg
     4741 ctgggaaggt tcacagctta tgcagctaac tggcctgctc agagtaggaa agagccatct
     4801 tccttcggta ggaagctgtg gaacatactt gttgctagaa agaatcaaga ctgtgctggg
     4861 gcctggtgag atggctcagt ggttatggca ctcagtgcca aacctgatgg ccggactatg
     4921 ttctctgcaa ccaccctggt ggaaggcaga actgaatcag gccagctggg actgccacgc
     4981 gcatgtgtgc acacaacggt ataactgtaa agtctctaga acagcagctg ggaatggtgg
     5041 tgcatgccta caatctcagt gcttgggagg ctgggccagc gtgagatcct gcctcagagt
     5101 aaacaaccct cagaactcag cattagcggg atgtgggtgc actgtgacaa tcagggcagt
     5161 ggttttagta gtctgagctg taggaaggca tcctttatct tttagaattc tgatttctta
     5221 ctgctcaaga aagaggctag gatttaatga gcttccaggg ctcttcccat tttaacttct
     5281 gtcactcctc tggaagacca tctagagccg gtctaataac ataggttact ctgagaccaa
     5341 agtttggaca ttggccagaa tacaaagctt catgtgttta tgccgtctcc agccattttg
     5401 ctcaagaaga gagctaagga atatctgggt gccagatatt tttgtttgca ggtagaagca
     5461 ggggctaaac tgggaggtga gggatgaact gttctaggtc agagtcctga acctcattct
     5521 acacagagca cataagtgac ttttcaggct aaagcacagc ttggtagcct tcctctcccc
     5581 actgatattc tgatttattg gccttatgag taggccagat attataggtg atgtgtgaac
     5641 atgcctgtgt gtgcactggg gatctcatgc atgtaagcat gttccactga gctacgcctt
     5701 gggtaattcc aagctaagac tgagaagcag ggctgtcagg cacagtggta cacgtcttta
     5761 accccagcat ttgagagaca taggtaggtg gatctctgag ctcaaggcca gccagggcta
     5821 cacagtgaga ccctgtctct gcacacacag ctccactcta cccttgggtt ggggcttctt
     5881 ggtgtcgtct atactactgc tgtagatcaa attctgagtg ccaaagatcc cagtcaaacc
     5941 catgaaattt aaggatatac taatccaaaa aagctagaaa tcagcagtag agagagaatt
     6001 aggtcaaaaa ctagaactat aaactcattt gcaagtaaga acagcccttc atgggcagaa
     6061 gctctaccac gaacatttat tctattaaag cagattgtaa attttcatca gtacaaatat
     6121 atatatatat atatatgtat gtatatataa cttacatttg attgtaaggc caacgtccga
     6181 aagtaaaaat gagatgggac ctcatgttgt tacccactgt caagtagctg catggcatgg
     6241 gatgttctgt tcatggtggg gcagaaggga cacagacaga gcacatccct gtgaaactta
     6301 cagcaatgaa acttcaagga cagaacccat taagacccac attacaaacc aacacaatag
     6361 cattcccttt tctggatatg attatgtcat tgtcacctta atgctagagg attaacataa
     6421 gaaaattgca atgatacaca aagattcaac acattcccta gagcgtagat tgattccatt
     6481 aaaataacgt tagaatctca catctgaaac caggacaaca ctactctctc attgtatcag
     6541 aagtgctgcc tagcgaccgc gctggtcatc agtagattgg tttgcaatgt gctactcagt
     6601 taacgatgag tgatcacaaa gaagccaggc tccgcctaca acttccagcc cttcctcctt
     6661 ttccttccat aggcgtcaat gataaatcaa tcttatgtac agtctcttat gtctaatcca
     6721 cgcacttttg gcaagattac ttacaactca tacagctttt aatattgaga actatttaaa
     6781 atattctagg tgcataaaaa taaagatttt ggcttttttg atatata
//
