LOCUS       NM_001107755            2734 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus peptidase domain containing associated with
            muscle regeneration 1 (Pamr1), mRNA.
ACCESSION   NM_001107755 XM_001071590 XM_230325
VERSION     NM_001107755.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2734)
  AUTHORS   Abonnenc,M., Nabeebaccus,A.A., Mayr,U., Barallobre-Barreiro,J.,
            Dong,X., Cuello,F., Sur,S., Drozdov,I., Langley,S.R., Lu,R.,
            Stathopoulou,K., Didangelos,A., Yin,X., Zimmermann,W.H., Shah,A.M.,
            Zampetaki,A. and Mayr,M.
  TITLE     Extracellular matrix secretion by cardiac fibroblasts: role of
            microRNA-29b and microRNA-30c
  JOURNAL   Circ Res 113 (10), 1138-1147 (2013)
   PUBMED   24006456
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Dec 23, 2022 this sequence version replaced NM_001107755.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582424.1684744.1,
                                           SRR22582416.329929.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760400
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-112               JAXUCZ010000003.1  109344046-109344157
            113-289             JAXUCZ010000003.1  109385225-109385401
            290-418             JAXUCZ010000003.1  109391793-109391921
            419-533             JAXUCZ010000003.1  109409965-109410079
            534-751             JAXUCZ010000003.1  109411678-109411895
            752-859             JAXUCZ010000003.1  109415159-109415266
            860-1072            JAXUCZ010000003.1  109435505-109435717
            1073-1139           JAXUCZ010000003.1  109437393-109437459
            1140-1372           JAXUCZ010000003.1  109439678-109439910
            1373-1665           JAXUCZ010000003.1  109441127-109441419
            1666-2734           JAXUCZ010000003.1  109442527-109443595
FEATURES             Location/Qualifiers
     source          1..2734
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q32"
     gene            1..2734
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /note="peptidase domain containing associated with muscle
                     regeneration 1"
                     /db_xref="GeneID:311252"
                     /db_xref="RGD:1308745"
     exon            1..112
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..2202
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /note="regeneration associated muscle protease; inactive
                     serine protease PAMR1"
                     /codon_start=1
                     /product="inactive serine protease PAMR1 precursor"
                     /protein_id="NP_001101225.2"
                     /db_xref="GeneID:311252"
                     /db_xref="RGD:1308745"
                     /translation="MELDRWAQLGLAFLQLLLISSLPREYTVINEACPGAEWNIMCRE
                     CCEYDQIECICPGKKEVVGYTIPCCRNEDNECDSCLIHPGCTIFENCKSCRNGSWGGT
                     LDDFYVKGFYCAECRAGWYGGDCMRCGQVLRASKGQILLESYPLNAHCEWTIHARPGF
                     IIQLRFSMLSLEFDYMCQYDYVEVRDGDNSDSPLIKRLCGNERPAPIRSTGSSLHVLF
                     HSDGSKNFDGFHAAFEEITACSSSPCFHDGTCILDTTGSFKCACLAGYTGPRCENLLE
                     ERNCSDLGGPVNGYKKITGGPGLLNERHVKIGTVVSFFCNGSYVLSGNEKRTCQQNGE
                     WSGKQPVCMKACREPKISDLVRRRVLSMQVQSRETPLHQLYSTAFSKQKLQDASTKKP
                     ALPFGDLPPGYQHLHTQVQYECISPFYHRLGSSRRTCLRTGKWSGRAPSCIPICGKIE
                     SVASPKTQGTRWPWQAAIYRRTSGVHDGGLHKGAWFLVCSGALVNERTVVVAAHCVTE
                     LGKVTIIKTADLKVVLGKFYRDDDRDEKTIQNLRISAIILHPNYDPILLDTDIAVLKL
                     LDKARISTRVQPICLATTRDLSASFEESHITVAGWNILADVRSPGFKNDTLHYGMVKV
                     VDSMLCEEQHEDHGIPVSVTDNMFCANKDPSTPSNICTAETGGIAALSFPGRASSEPR
                     WHLVGLVSWSYDKTCSNSLSTAFTKVLPFKDWIERNMK"
     exon            113..289
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /inference="alignment:Splign:2.1.0"
     exon            290..418
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /inference="alignment:Splign:2.1.0"
     exon            419..533
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /inference="alignment:Splign:2.1.0"
     exon            534..751
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /inference="alignment:Splign:2.1.0"
     exon            752..859
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /inference="alignment:Splign:2.1.0"
     exon            860..1072
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /inference="alignment:Splign:2.1.0"
     exon            1073..1139
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /inference="alignment:Splign:2.1.0"
     exon            1140..1372
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1665
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /inference="alignment:Splign:2.1.0"
     exon            1666..2734
                     /gene="Pamr1"
                     /gene_synonym="Ramp; RGD1308745"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccactccag tcactccagg cagcgcagca gtgggaacga tggagctgga ccgatgggca
       61 cagttggggc tcgcgttcct gcagctcctt ctcatctcat cattgccaag agaatacacg
      121 gtcattaacg aagcctgccc cggagctgag tggaacatca tgtgtagaga gtgttgtgaa
      181 tatgatcaga ttgagtgcat ctgcccagga aagaaggaag tggtgggtta taccatccca
      241 tgctgcagga acgaggataa cgaatgcgac tcctgtctaa ttcacccagg ttgtaccatc
      301 tttgaaaact gcaagagctg ccggaatggc tcgtggggcg gaactctgga cgacttctac
      361 gtgaagggat tctactgtgc agagtgcaga gcaggctggt acggagggga ctgtatgcga
      421 tgtggccagg ttcttcgagc ttcgaagggt cagatcttgt tggagagcta tcccttaaat
      481 gctcactgtg aatggaccat tcatgccaga cctgggttta tcatccagct gaggtttagc
      541 atgttgagcc tggagtttga ctacatgtgc caatatgact atgttgaggt ccgtgatggg
      601 gataacagcg acagccctct tatcaagcgt ctctgtggca acgagaggcc agctcccatc
      661 aggagcactg gctcttcact ccatgtcctt ttccattctg atggctccaa gaacttcgat
      721 ggcttccacg ctgcctttga ggagatcaca gcgtgttcct catcgccttg ttttcatgat
      781 ggtacatgca tccttgacac cactgggtct ttcaagtgtg cctgtctggc tggctacact
      841 gggccccgct gtgaaaacct tcttgaagaa agaaactgct cagaccttgg gggcccagtc
      901 aatgggtaca agaaaatcac aggaggtcct ggacttctca atgagcgcca cgtaaaaatt
      961 ggcacggttg tgtctttctt ttgtaatggc tcatacgttc tgagtggcaa cgagaaaaga
     1021 acttgccagc agaacggaga gtggtcagga aaacagcctg tctgcatgaa agcctgccgg
     1081 gaaccgaaga tctcagacct ggtgaggagg agagtccttt caatgcaggt tcaatcaagg
     1141 gagacaccat tacaccagct ttattccacg gctttcagca agcagaaact gcaggatgcc
     1201 tctaccaaaa agccagccct tccatttgga gacctacccc ctggatacca acatttgcac
     1261 acccaggtcc agtatgagtg catctcgccc ttctaccacc gcctgggaag cagcaggagg
     1321 acatgcctga gaactgggaa gtggagtggg cgggccccgt cctgtatccc aatctgtgga
     1381 aaaatcgaga gcgttgcttc tccaaagact caagggaccc gctggccatg gcaggcagcc
     1441 atctaccgga ggaccagtgg tgtacatgac ggtggtctgc acaaaggtgc atggttcttg
     1501 gtctgcagtg gtgccctggt gaatgagcgt actgtggttg tggctgccca ctgtgtaaca
     1561 gagctgggga aggtcaccat catcaagaca gcagacctca aggttgtctt gggaaaattc
     1621 tacagggatg atgatcgaga tgagaagacc atccagaatt tacggatttc tgctatcatt
     1681 ctgcacccca actatgaccc tatcctgctt gacactgaca tcgccgttct gaagctccta
     1741 gacaaggccc gcatcagtac ccgtgtccaa cccatctgcc tggctaccac tcgggacctc
     1801 agcgcctctt ttgaggagtc tcacatcact gtggctggct ggaacatcct ggcagatgta
     1861 aggagccctg gctttaagaa tgacacccta cattatggga tggtcaaggt ggtagactca
     1921 atgctttgtg aggaacaaca cgaagaccat ggcattccag ttagtgtcac tgacaatatg
     1981 ttctgtgcca acaaggaccc cagtacccct tctaacatct gcactgctga gacagggggc
     2041 atcgctgctt tatccttccc aggccgagca tcctctgagc cacgttggca tttggtgggg
     2101 ctggtcagct ggagctatga caagacatgt agcaacagcc tatccacagc cttcacaaag
     2161 gtgttgcctt tcaaagactg gattgagaga aacatgaagt gaaccagcca caaggccacc
     2221 gagaagcttt ctcctagcat ccatctgtac atatatggtg tatggaacag tgtggacctg
     2281 aagcgtaatt ttgcccatga cctttgttac tgaaaggctt ctggtttcag ggtgttatct
     2341 caatagagag tgaatagagt ttactttctg tcagggaact gtcttcctgg ctgcttggga
     2401 atcatctaaa agatgccaga ttttgcaaga actgtgtttc ttcaaagaag accatgtgaa
     2461 tagaatgaga gcctccttct ccttctccac tccaagcgat gtgactgtca atcagtttgg
     2521 gttgagaagg ttgacttgag gaggcctggg ctgcacctgc tttcagtcaa agttccaaag
     2581 aacagcttgt atgacagccc aggagaagga ggaccttgga tgtgacacat gctcctgtga
     2641 acattgtctc aagattttct gattcttttc ctttccaatc ttctgtatac atttcaataa
     2701 aacaaggtct ggctcctgac ctacaaaaca aaaa
//
