LOCUS       NM_001134982            2658 bp    mRNA    linear   ROD 12-JUN-2023
DEFINITION  Rattus norvegicus protein associated with LIN7 2, MAGUK p55 family
            member (Pals2), mRNA.
ACCESSION   NM_001134982 XM_001056864 XM_342682
VERSION     NM_001134982.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2658)
  AUTHORS   Henras AK, Plisson-Chastang C, O'Donohue MF, Chakraborty A and
            Gleizes PE.
  TITLE     An overview of pre-ribosomal RNA processing in eukaryotes
  JOURNAL   Wiley Interdiscip Rev RNA 6 (2), 225-242 (2015)
   PUBMED   25346433
  REMARK    Review article
REFERENCE   2  (bases 1 to 2658)
  AUTHORS   Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M and
            Stoorvogel W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   3  (bases 1 to 2658)
  AUTHORS   Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M,
            Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail
            S, Li P and Sutton G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   4  (bases 1 to 2658)
  AUTHORS   Leonoudakis D, Conti LR, Anderson S, Radeke CM, McGuire LM, Adams
            ME, Froehner SC, Yates JR 3rd and Vandenberg CA.
  TITLE     Protein trafficking and anchoring complexes revealed by proteomic
            analysis of inward rectifier potassium channel (Kir2.x)-associated
            proteins
  JOURNAL   J Biol Chem 279 (21), 22331-22346 (2004)
   PUBMED   15024025
REFERENCE   5  (bases 1 to 2658)
  AUTHORS   Kamberov E, Makarova O, Roh M, Liu A, Karnak D, Straight S and
            Margolis B.
  TITLE     Molecular cloning and characterization of Pals, proteins associated
            with mLin-7
  JOURNAL   J Biol Chem 275 (15), 11425-11431 (2000)
   PUBMED   10753959
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC169025.1.
            
            On or before Sep 16, 2008 this sequence version replaced
            XM_342682.3, XM_001056864.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169025.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132264, SAMD00132267
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2658
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     gene            1..2658
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /note="protein associated with LIN7 2, MAGUK p55 family
                     member"
                     /db_xref="GeneID:362359"
                     /db_xref="RGD:1311833"
     exon            1..187
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
     exon            188..306
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
     CDS             190..1812
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /note="CH474011:EDL88200; MAGUK p55 subfamily member 6;
                     membrane protein, palmitoylated 6 (MAGUK p55 subfamily
                     member 6); membrane palmitoylated protein 6; protein
                     associated with LIN7 2, MAGUK family member"
                     /codon_start=1
                     /product="protein PALS2"
                     /protein_id="NP_001128454.1"
                     /db_xref="GeneID:362359"
                     /db_xref="RGD:1311833"
                     /translation="MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERL
                     EDSKLEAVSDNNLELVNEILEDITPLISVDENVAELVGILKEPHFQSLLEAHDIVASK
                     CYESPPSSPEMNIPSLNNQLLPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHG
                     GMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTIAPQQV
                     FVKCHFDYNPFNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPS
                     QFLEEKRKAFVRRDWDNSGPFCGTISNKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMP
                     PFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTVPFTSRKPREDEKDGQAYKFVSR
                     SEMEADIKAGKYLEHGEYEGNLYGTKIGSILDVVQTGRTCILDVNPQALKVLRTSEFM
                     PYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLII
                     VNDNLDKAFENLQTAIEKLRTEPQWVPISWVY"
     exon            307..459
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
     exon            460..612
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
     exon            613..840
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
     exon            841..972
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1072
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1073..1141
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1142..1303
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1304..1506
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1507..1635
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1636..2635
                     /gene="Pals2"
                     /gene_synonym="Mpp6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgagagagg ctggccgcgc gggccggcgg gcagcggcgg cgcccggaga cgggcggaag
       61 gcgaggctgg cggggacggc gggagccgcc cgcccgaccg cgagcccctg agtcggtaga
      121 tggggctacg cggcgcccgc ggctgaggag aggagcggcg gcgcggaggc ggccgaggtg
      181 cgagccgaaa tgcagcaagt tttggaaaac cttacagagc tgccctcatc tacaggagca
      241 gaagaaatag acctaatttt cctcaagggg attatggaga atcccattgt gaaatcactt
      301 gctaaggctc acgagagact tgaagattca aaattagaag ctgtcagtga caataacttg
      361 gaattagtga atgaaattct tgaagatatc actcctctca taagtgtgga tgaaaatgtg
      421 gcagaactgg ttggtatact caaggagcct cacttccagt cgctcctgga ggcccatgat
      481 attgtggcat caaagtgtta tgaatcgccg ccttcaagcc cagaaatgaa tattccttct
      541 ctcaataatc agttattgcc agtggacgcc atccgtattc tcggtattca caaaagagct
      601 ggagagccat tgggtgtaac attcagggtt gaaaataatg atctggtaat tgcccgaatc
      661 cttcatggag gaatgataga tcgacaaggt ctgcttcatg tgggagatat cattaaggaa
      721 gtcaatggtc atgaggttgg aaacaaccca aaggaattac aagaattatt gaaaaatatt
      781 agtggaagcg tcaccctaaa aatcttacca agttacagag atactattgc tcctcagcag
      841 gtgtttgtca agtgtcattt tgattataat ccattcaatg ataacctgat accctgcaaa
      901 gaagctggac tgaagttttc caaaggagaa attcttcaga ttgtaaatag agaagaccca
      961 aattggtggc aggctagcca tgtgaaagag ggaggaagtg ctggtctgat tccaagccag
     1021 ttcctggaag agaaaagaaa ggcatttgtt cgcagagatt gggacaattc aggacccttt
     1081 tgtggaacta taagcaacaa gaaaaagaaa aagatgatgt acctcacaac caggaatgca
     1141 gagtttgatc ggcatgaaat tcagatctat gaggaagtag caaaaatgcc acccttccag
     1201 cggaaaacat tagtgttgat cggagctcaa ggtgtgggca gaaggagttt gaaaaacagg
     1261 ttcatagtac tgaatcctgc tagatttgga acaacagtgc catttacttc acggaagcca
     1321 agagaagacg aaaaggatgg gcaagcatat aaatttgtgt cccgatcaga gatggaagca
     1381 gatattaaag ctgggaagta tctggagcat ggggaatatg aagggaacct gtatggaact
     1441 aagatcggct ccattctcga cgtcgtccaa accggacgga cttgcatttt ggatgttaat
     1501 ccacaagcac tgaaggtgct gcggacctcc gagttcatgc cttacgtggt gtttattgct
     1561 gctccagagc tagagacttt gcgtgccatg cacaaggctg tggtggacgc aggaatcacc
     1621 accaagcttt tgacggactc tgacttgaag aaaacggtgg atgaaagtgc ccggattcag
     1681 agagcataca accactactt tgatttgatc atcgtaaatg acaatctaga caaagccttt
     1741 gagaacctac aaactgccat tgagaaactg aggacggagc cacagtgggt ccccattagc
     1801 tgggtgtact gatgattcag tgaggttaac agttaaataa aactttaaaa cagtgactca
     1861 acaagtaaac cttctgctgg agagcacatg cgcagggaca ggcgcctgcc ggccgcaccc
     1921 aggcattttt attgtgtaga ttgaagtaac agtgcactag gcggaatttt tatataattg
     1981 tggttgggaa ggtgtactaa tatataattt ctcttaattt ttctaacttt ttatggataa
     2041 aacctttcta ttcatatacc acataaagaa atgcgttgaa gcatttgtaa gttttgattt
     2101 agtaccctta ccttttcatc aaaggaattt tcagatcatt ctctccaaca gctcatattt
     2161 tcactgtgat aatgaatact tgaaatagtt ttgtaatgct atcattctca taagtggtta
     2221 gggaagggtc aattattctc ttattagggg gaaaaaaaac agtagctatt gacctttttc
     2281 atgaacctcg ttacagaagc agaatttaaa tctcagtgtt atagctagtc cactactatc
     2341 ctgatctgct cagtgccccc tctactccag agtacggctg ttcatctcat ctgtacagat
     2401 aaatcagctc ccctcacccc tctagtgaac acagcgaaga gcgatagctt gcactctcta
     2461 tgggattatt cttttcattt gtcgcagtga tgtgctgatg ccgactgatg ttgaatatta
     2521 gttatggagg ctcgggtgga agcctggtca tgcacacaga gagtgcctta tcctgcaaaa
     2581 ctttactcaa cttagagaac atttacttat tttcaaatat aaaatttcaa acctaaaaaa
     2641 aaaaaaaaaa aaaaaaaa
//
