LOCUS       XM_008764773            5538 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein associated with LIN7 1, MAGUK
            p55 family member (Pals1), transcript variant X1, mRNA.
ACCESSION   XM_008764773
VERSION     XM_008764773.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008764773.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5538
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5538
                     /gene="Pals1"
                     /gene_synonym="Mpp5"
                     /note="protein associated with LIN7 1, MAGUK p55 family
                     member; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 44 ESTs, 1 long SRA read,
                     9 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 191 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:314259"
                     /db_xref="RGD:1308071"
     CDS             414..2441
                     /gene="Pals1"
                     /gene_synonym="Mpp5"
                     /codon_start=1
                     /product="protein PALS1 isoform X1"
                     /protein_id="XP_008762995.1"
                     /db_xref="GeneID:314259"
                     /db_xref="RGD:1308071"
                     /translation="MTTSYMNGHVTEESDSGIKNLGLASPEEHPKHREMAVDCPGDLG
                     TRLMPVRRSAQLERIRQQQEDMRRRREEEGKKQELDLNSSMRLKKLAQIPPKTGIDNP
                     IFDTEEGIVLESPHYAVKILEVEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNRDFQ
                     NAFKIHNAVTVHMNKASPPFPLIANVQDLVQEVQTVLKPVHQKEGQELTALLNAPHIQ
                     ALLLAHDKVAEQEMQLEPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMD
                     SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIP
                     SQQIKPPPAKETVIHVKAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQEDPNWWQA
                     YREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKRKKVLY
                     NANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFA
                     SAVPHTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSIDSVRQV
                     INSGKICLLSLRAQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELREI
                     IEKTREMEQNNGHYFDTAIVNSDLDKAYQELLRLINKLDTEPQWVPSTWLR"
ORIGIN      
        1 gcggtgggga gggggcgggg actgaaggct ccgaggtggg ggcaatcggg agtttctgga
       61 ttctttatcc ggtgttcgga gggccgccgg acggagggtt gtggcttgga tcgcgctgag
      121 gagcgaataa gagcgagcgg atcggccgcc gccgggtcac ggagttttgc agaataagaa
      181 agctaacctg aatattgggg ggaaagacag agaagagaaa caaggattga agacgaggtt
      241 ttccagtttg cataatattt gcctcatgga tacatttcat agcattatta tgtgatatga
      301 gaagttattt ttcttttttg aagtaacatg gattttatac tacagaatca agagaattgg
      361 ctttatagga aattttgata tataaaaagt gatagaggtt tttatagata accatgacaa
      421 catcgtatat gaatgggcat gtgacagagg aatcagacag cggaataaaa aatcttggtc
      481 ttgcatcacc agaggaacat ccgaaacaca gagagatggc tgttgactgc cctggagatt
      541 tgggcaccag attgatgcca gtgcgaagaa gtgcacagtt agagcgcatt cgacagcaac
      601 aggaggatat gagacgtagg cgtgaagaag aagggaaaaa gcaagaactt gacctaaatt
      661 cttccatgag acttaagaaa ctagctcaaa ttcctccgaa gactggaata gataacccta
      721 tatttgacac agaagaagga attgttttag aaagtcctca ctatgctgtg aaaatattag
      781 aagttgaaga cttgttctct tcacttaaac atatccagca cactttggtt gattctcaga
      841 gccaggagga tatttcactg cttttacagc ttgtacaaaa tagagatttt cagaatgcat
      901 tcaagataca caatgctgtc acagtgcaca tgaacaaggc cagccctccg tttcctctta
      961 tcgccaatgt acaagacctt gtacaagagg tacaaactgt cttaaagcca gtccatcaga
     1021 aggaaggaca agaattaact gctttgttaa atgctccaca tattcaggca cttttactgg
     1081 cccatgataa ggttgctgag caggaaatgc agctagagcc cataacagat gagagagtct
     1141 atgaaagtat cggccattat gggggagaaa ctgtaaaaat agttcgtata gaaaaggctc
     1201 gggatattcc attgggtgcc acggttcgta atgagatgga ttctgtcatc ataagtcgga
     1261 tagtgaaagg aggcgcggca gagaagagcg ggcttctgca cgaaggagac gaagtcctag
     1321 agatcaatgg catcgaaatc cggggcaagg acgtcaatga ggtttttgac ttgttgtctg
     1381 atatgcacgg tacgttgaca tttgttctga ttcctagtca acagatcaag cctcctcccg
     1441 ccaaagaaac tgtaatccac gtgaaagctc attttgacta tgacccctca gatgaccctt
     1501 atgttccctg tcgagagtta ggactgtctt ttcaaaaagg agatatactt catgtgatta
     1561 gtcaagaaga tccgaattgg tggcaggcct atagagaagg agacgaagac aatcagcctc
     1621 tagctggact tgttccaggg aaaagttttc agcagcaaag ggaagccatg aagcaaacta
     1681 tagaagaaga taaggagcca gaaaaatcag gaaaactatg gtgtgcaaag aagaataaaa
     1741 agaagaggaa aaaggtttta tataatgcca ataaaaatga tgattatgac aatgaagaga
     1801 tcctaacgta tgaagaaatg tcactttacc atcagccagc aaataggaaa agacctatca
     1861 tcttgattgg tccccagaac tgtggccaga atgaactgcg ccagagactc atgaacaaag
     1921 aaaaagaccg ctttgcatct gcagttcctc atacaactcg gaataggcga gaccacgaag
     1981 tagctgggag agattaccac tttgtttcac ggcaagcatt tgaagcagat atagcagctg
     2041 gcaagttcat tgaacatggt gaatttgaga aaaacctgta tggaaccagc atagattctg
     2101 tacgacaagt aatcaactct ggcaaaatat gtcttttaag tcttcgagca cagtccttga
     2161 agaccctccg gaattcagat ttgaaaccat acatcatctt cattgcacca ccttcacaag
     2221 agagacttcg ggcgttgtta gccaaggaag gcaagaaccc aaagccggaa gaattaaggg
     2281 agattattga gaagacgaga gagatggaac agaacaacgg ccactacttc gacactgcga
     2341 ttgtgaattc agatcttgat aaagcctatc aggaactgct taggcttatt aacaaactgg
     2401 acaccgagcc tcagtgggtg ccatccacct ggctaaggtg aaggaaatgg ctgttctgtg
     2461 tcatcatgat gagctttatt tgataaaccg ccaacaggaa gatggcctta acgctgagag
     2521 ttaatctcct acactagtga gaaaggcccg ttaggcaatt tgtacacaac acttcctgca
     2581 cattgcttta gggggccttg acttgtttgg agatttaaaa tggaaacttt cttcagagca
     2641 tttctgattt atgttttcac ctttcttgcc tcttggtcag atgtctataa aaaaaaatgt
     2701 atatatatac gtaatatacc attgtctcac ttaggtatga atactaacat tatttaacat
     2761 ttaacttaaa tgacttcatg ggattattga gagaaggggc tgtgcttctg tgcactgaga
     2821 ataacagtat tttcttaaac tgatttagtc atcagaaata tttctcttaa agaaaaggaa
     2881 aaaaaagtgt cactttagtt tggagcaact tcttaagttt aaatttattg gttaaacttt
     2941 tcattctgaa aaacattcca ttaaaaatac tagctttgtt aggcatggaa gcgcacgcct
     3001 ttagtcccag cactcaagag acagaggcag gtggatctct gagttcaagg ccagccttgt
     3061 cttcagagta acttccaggc cagtcaagtc tgcacagaga aaccctgtct cgaaaaaccg
     3121 aaagtaaaaa taattagtcc agtccttcag cttggacttt gtggcagaga atgcacaacc
     3181 agcagccgcc agtgtagtta caagtataca acagatgctg acatttttaa agatagaatt
     3241 ttctgaatta ctttactaaa ttgtggtgat ttgatagcct tgactccttg ctctgataaa
     3301 aagttcatat aaactatgct gaccattaaa atttcttcct tatgatgcaa atatgtttta
     3361 tgtcagtgaa aggatgtaac acatttgaca ttttctgcat tttcatatcc gagcacagaa
     3421 ttatatctat tactgtgcta tatatgtagg tgtcaactgg aaatctgtac tgtatattga
     3481 tatttaatag attaataaat agtgtgttct gcattggaat agttttatac atacatacac
     3541 actgaggaaa taccgtgaca actgactttg agatcaggag gcagtcatta agcattttag
     3601 aaaagaacat cgaaggaaag ttattaagtg tatacggaca agtttttatc ctaacagagt
     3661 cttcctcgtg actgaaatac agcagcttgc tacaccttaa atgttcacac taatggaatt
     3721 tttgtactgt ctgtatagct atagctttaa aattcagtgt gtacaaatcc gcacagaaag
     3781 ttaacttata gtcttctcaa gcctttaagg aaagtgttct gtgtgacaac caacctcaaa
     3841 tgtgaatgtc ttgattttat gtagctacag aatttcatgt tcccaaagct aaacactgga
     3901 ataacactga cttgtcactt agcacaagca gtggtgttaa tgtcttgaca gtgctgtttg
     3961 tgtctggttt ctcttctgga taatcttatt ggaacaaatg tagagtattt gtgatgtctt
     4021 ttatgttcag ttttgcatgg cttttgtatt ggctggcaaa tgtgtctttt agaaatactt
     4081 tgaaaataat cttccttacg aataaaggca caatcttgag gtgaaggaaa gaatgctctt
     4141 cagtctcaag tctgaacact cccagtttac agcaggaaaa atgcaaggtc cacacccttg
     4201 tcagcattga tggtcaattc actcagcact tagaggatta aatctcttca ggttttcaac
     4261 tgtttttttt ctcctcagga atgaaaggta gtctatggtc agtagagctt tgtgatctgc
     4321 aggctgactg aaaatactga ctggtgagac ttggtgcaca cctgtaaccc tgtaggaaga
     4381 cctagagttt aaggctgatc tgagttacat gaaactgtct caaaaaataa agaaataaaa
     4441 atgtttttaa aagagaaagg ggttggggat ttagctcagt ggtagagtgc ttgcctagca
     4501 agcgcaaggc cctgggttcg gtccccagct ctgaaaaaaa aaaaaaagaa aaagaaaaaa
     4561 gagaaaggat gcatggattg aaggatgaac attggatttg agtaaagttt taagtttctg
     4621 tcaatgccac ctggtgacag tggggctatg tgccatcaag actcccacac atgaccttcc
     4681 cagcagagcc tatgagattc ccaaggtttg tgagatccta taattttctt tacttgttaa
     4741 gtaatggtag gatagtgtat atcctgagct tttgtaaacc ctaatgttta tgaatgcact
     4801 aatgctcaac atagtctcta aacagtgaaa agttaagcta tgctaaaaaa caaaaacccc
     4861 ttgttttaca tgtgatgatt gtacagccat tagggccaat tcaattttct atccctctgt
     4921 ggttctgatt ggaaactgct gtgccaggga agtcttagcc acttaaagaa atgatattgt
     4981 ggttgctggg aacacagttc agttggtaga gtatcgccta gcgtgcacaa aaccctggct
     5041 gtgcagaaag ccagcatggg tgttcatggg tgtaacccag cacttggaaa ttggaaagag
     5101 gaggatctgc aggtcaaggt tatcatcagc tacatgagac cctgtctcaa aaacaaagta
     5161 ggtcatacca gctaatgaca tgtcctctgg aaatccaaac aaggaaggac cttcatttct
     5221 tagaggttct tacttcagaa taaataggat gttaatattt agactggtct agattgcttt
     5281 ctatgaaaat ctagtgtgtg gattgttttc cttctctcat ggactaagga gtaaatattg
     5341 atgaggaatg atttgaatgt aattttttcg aatgtgtgga aaatataaac cagggattta
     5401 tccttaatga aggtagccac tctgacattt gttgttgatc tccctttgtc ttgtctctgc
     5461 actcgttttg agatgtctta ctgcacaatg tattataaaa ataaaaagta aacctattat
     5521 ttcaaattgt aaaagcca
//
