LOCUS       XM_002728582            2529 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus paralemmin 3 (Palm3), transcript
            variant X1, mRNA.
ACCESSION   XM_002728582
VERSION     XM_002728582.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002728582.7.
            
            On Jan 21, 2021 this sequence version replaced XM_002728582.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2529
                     /gene="Palm3"
                     /note="paralemmin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 7 ESTs, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 74 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100359592"
                     /db_xref="RGD:2323602"
     CDS             271..2274
                     /gene="Palm3"
                     /codon_start=1
                     /product="paralemmin-3"
                     /protein_id="XP_002728628.2"
                     /db_xref="GeneID:100359592"
                     /db_xref="RGD:2323602"
                     /translation="MDGAAEGPERQEDPASKDPESPEGQAQARIRNLEDSLFSLQSQL
                     QLLQSASTGAQHRPAGRPAWRREGPRPLSQPAMDTGPTGPTDVDKRTSLPDAPVGISS
                     ESPSDPREESIGVLPALRPSPEAIGTSSEANGPCPGHSSLPEQLSLGVSSVTKAKGDG
                     VVEVVWAGLRATENSATGPTGVELEAKVEEVVLEAIGARQGTSSPDLPTWVKEGRGVV
                     EVVWEGLGGRDLDVTEESGSGAEAMHTGTPRLQEQFESETCRKEEGASRDSLEGVGQG
                     GPGAEEGSFIWVEKVALSEDWEEILMEGLEAPPEAGSARGPEALMGAQPRGDESSWEV
                     EKREVEKMEGREEKGRAEKLGAELEDGAAVLPDATQGGEESEAEKIERKDGEGPFPEE
                     IATDEEKWEVKEKKDEEPLEVEKGGEEEPPTIEKPLVAEKEAEGSPETEKKGNETPLG
                     QEKDGEGSLDRESKTEILLDGETGGESSLDETKGSKKLLDEETGGEGSLDEATKGSKK
                     LLDGEAGGSELFSEVEKTSGAKDDVSPEEQGKSNEGADFQAEEASQPGATLCVQEEPR
                     SEEQGLQDPEKQESPVEEATRKPQPCTESEGPPEDATPLLAETPAPEQPVESQPLLRQ
                     EVSSTNPGDHPAPTYAPAPQLELAEVKEASGPKQKTCQCCVVM"
ORIGIN      
        1 gcgcggccgc ctggtcctgc cccgccccgc ccctttcgct gctgagtcag cgctctgcgg
       61 cccccgcccg cgggaggacg ccccgggagt cccgggagcc ccgaggaggc gggcggaggg
      121 cggcactggg cccgcccgca gctcttggtc ctgtgtgcgc aggagaagcg gcggctgcag
      181 gaggagatcg gcgccgcgcg tcgcgagctg gaggaggaga aattccgcgt ggagcggctc
      241 aagaggaaat ctctccgaga acgttggctc atggatgggg cagctgaagg gccagagcgg
      301 caggaggacc ccgcctccaa ggacccagaa tcacccgaag gacaggccca ggctcgaatt
      361 cgcaacctgg aagacagctt gttttcactc cagtcacagc tacagctgtt gcaaagtgcg
      421 tccacaggtg cccaacacag acctgctggc aggcccgcct ggcgcagaga gggtccccgt
      481 cctctctctc agcctgccat ggacacaggt cctacaggcc ctacagatgt ggacaagaga
      541 acttccttgc cagatgctcc agtgggcata tcttccgagt ctccttctga tcccagggag
      601 gagtccattg gggttctacc agccttgagg ccatcccctg aggctatagg gacgtcttca
      661 gaagccaatg gcccctgccc tgggcacagc tccctcccag agcagctgag cctaggggtg
      721 tcaagtgtca ctaaggccaa aggagatggt gtggtggagg tggtttgggc tgggcttaga
      781 gccaccgaga acagtgccac aggccccaca ggtgtggagc tagaggctaa ggtggaagaa
      841 gtggttctgg aggccattgg ggccaggcag ggcaccagca gccctgatct ccccacttgg
      901 gtgaaggagg gcaggggtgt ggtggaggtc gtctgggagg ggttgggagg cagggatctt
      961 gatgtcacag aggagtcagg cagtggtgca gaggccatgc acaccggtac cccgagactc
     1021 caggagcaat ttgagtctga aacttgcaga aaagaggaag gtgcttctag agatagtctt
     1081 gagggtgttg ggcagggagg tcctggagca gaggagggat ccttcatttg ggtggagaaa
     1141 gtggccctca gcgaagactg ggaggagatc ttgatggagg gtttggaagc acccccagag
     1201 gcaggatctg caagaggacc tgaggcttta atgggggcac agcccagagg agatgaatcg
     1261 tcctgggagg tggagaagag agaagtggag aaaatggagg gcagagaaga gaagggaagg
     1321 gcggaaaagc ttggggcaga gctggaggat ggggcagctg tgctgccaga tgcgactcag
     1381 ggaggggagg aaagcgaggc agagaagata gagagaaaag acggtgaggg cccctttcca
     1441 gaagagatag caacagatga ggaaaagtgg gaggtgaaag aaaagaaaga tgaagagcca
     1501 ttggaagtag aaaagggagg tgaggaggag cctcccacca ttgagaagcc attggtggca
     1561 gaaaaagagg cagagggctc accggagaca gagaaaaaag gaaatgagac gccattgggc
     1621 caggagaaag atggcgaagg ctcattagac agagaatcaa aaactgagat attattggat
     1681 ggagagacag gaggtgagag ctcattggat gaaactaaag gaagcaagaa actattggat
     1741 gaggagacag gaggtgaggg ttcattggat gaagcaacta aaggaagtaa gaaactgttg
     1801 gacggggagg caggtggcag tgagctattc tcagaggtgg agaagacttc aggcgccaag
     1861 gatgatgtga gcccagagga gcaaggcaaa tccaatgaag gagcagattt tcaggcggag
     1921 gaagccagcc agccaggagc tactctctgt gtccaggagg agcccagatc agaggagcaa
     1981 ggactgcaag acccggagaa gcaagaaagc ccggtagaag aggcaaccag gaagcctcag
     2041 ccctgtactg agagtgaggg tcccccagag gatgccaccc cgctcctagc tgagacccca
     2101 gccccagagc agcctgtgga aagccagcca ctgctccgtc aggaagtgtc cagcaccaac
     2161 cctggtgacc accctgcacc cacatatgca cctgcccccc agcttgagct ggctgaggtc
     2221 aaagaagcta gtggccccaa gcaaaagacg tgccagtgtt gtgtggtcat gtgagcctac
     2281 gcctgccgcc cagcaccctc ttcctcctct cacagctacc tcgctgcctg gcatccagca
     2341 gaaggtccca ggcatagaca gggtaccata ggactcgtgg tagcacccag gagccagtag
     2401 gcccctgtgc ttacttacac ctgggctttt agattccctg cccactgcct gtggccctga
     2461 cttccttctg caatgaagcc tttatacttg aaaattaaat gttaaggcac tctggcttta
     2521 agaaaaaaa
//
