LOCUS       XM_039094914            6414 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus palladin, cytoskeletal associated
            protein (Palld), transcript variant X1, mRNA.
ACCESSION   XM_039094914
VERSION     XM_039094914.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094914.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6414
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6414
                     /gene="Palld"
                     /note="palladin, cytoskeletal associated protein; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 37 ESTs, 2 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100360205"
                     /db_xref="RGD:2322545"
     CDS             254..4483
                     /gene="Palld"
                     /codon_start=1
                     /product="palladin isoform X1"
                     /protein_id="XP_038950842.1"
                     /db_xref="GeneID:100360205"
                     /db_xref="RGD:2322545"
                     /translation="MSETSSHDSFYDSLSDVQEEGRSADFFPGLSAFLSQEEINKSLD
                     LARRAIDNSETEDFDSEKEISQIFSKSPTSLCETPSYEEKKSGEQTSSEGPRDNRRAS
                     VQPLAEQAERITSPAASKRKPGVSPLLASPSYIRSLRKAEKRGAKVPNPSAKPKAAQQ
                     SKTGPQSQLCDKAASFIEELTSIFREAAKPRNRSPNGESSSPDSGYLSPKNQPSTLMS
                     ASASQSPTADQLDQLEMDAEVKQPQGSLCYQAHKAPEETLPHTHIPHPQPQKARHLPS
                     SAPRFIQKLRSQEVAEGSRVYLECRVTGNPAPRVRWFCEGKELYNCPDIQIHCEGGEL
                     HTLVIAEAFEDDTGRYTCLATNPSGSDSTSAEVFIEGASSTDSESENSSFGSKVGAMP
                     QAQKKTTSVSLTIGSSSPKTGVTTAVIQPLSVPVQQVHSATSYLCRPDGTTMGCLLPV
                     FTKELQNTAASEGQVVVLECRVRGAPPLQVQWFRQGSEIQDSPDFRILQKKPRSTAEP
                     EEICTLVIAESFPEDAGIFTCSARNDYGSVTSTAQLVVTSANTENCSYDSMGEPNSDH
                     FQHFPPPPPILETGSYELASQKPSEIQQVNTPNLGFNMAALQMQFNSAERETNGVHPS
                     HGVNGLINGKAYGNKSPPTPAALLSPTKEPPPLLAKPKLDPLKLQQLQNQVRLEQEAC
                     AWPPAPPGVPCNSSSSGSSAPPSPPFPPPPPAFPELAACASPVPSEPMSALASRSTAM
                     QSSGSFNYARPKQFIAAQNLGPASGLPTPTSSPSSSSLPSPLSPTPRPFGRAPGPPFV
                     EPEAMWGPSSPSPPPPPPPVFSPSTAFPVPDVFPLPPPPPPLPSSTSHCASPARFSPG
                     QTPAAFLSALLPSQPPPVAVNALGLPKGVTPAGFPKKASRTARIASDEEIQGTKDAVI
                     QDLERKLRFKEDLLNNGQPRLTYEERMARRLLGADSANVFNIQEPEETAANQDAGAPR
                     ASVGGPLDGQKEYKVSSCEQRLISEIEYRLERSPVEETGDEVQEAEVPVENAAAPFFE
                     MKLKHYKIFEGMPVTFTCRVAGSPKPKIYWFKDGKQISPKSDHYTIQRDVDGTCSLHT
                     TASTLDDDGNYTIMAANTQGRVSCTGRLMVQAVNQRGRSPRSPPGHPHARRPRSRSRD
                     SGDENEPIQERFFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPIRPD
                     SAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFNLELVVAAKEAHKAPVF
                     IEKLQNTGVADGYPVRLECRVSGVPPPQIFWKKENESLTHSTDRVSMHQDNHGYICLL
                     IQGATKEDAGWYTVSAKNEAGIVSCTARLDVYTQWHQQPQTTKPKKVRPSASRYAALS
                     DQGLDIKAAFQPEASPSHLTLNSGLVESEDL"
ORIGIN      
        1 agagtctcag gccacagttg tctcaatccc acagaccaag cagtccttaa tggacaggca
       61 aggcagacct cctctcacca ggagagagaa gaaaagctcc tgggaaatcc atcgcccttg
      121 cgaaggcttc aaaccaacca agcattgaaa agttctgtac acagcttaac acacttactg
      181 aaagcaagaa cacaggtttc ctgtgcctcc agcttcctgc tacaagtaac aagtgtgtgt
      241 agactgctca aatatgtcag agacttcctc ccacgactcc ttctatgatt ccttatcaga
      301 cgtgcaggaa gagggcagaa gtgctgactt cttcccaggc ctctctgctt tcctcagcca
      361 ggaagaaata aataaaagcc ttgacctggc acgcagagct atagacaact ctgaaactga
      421 agattttgac tccgaaaagg agatctcgca gattttcagc aagtctccta cgagcctctg
      481 cgaaactcct tcctatgagg agaagaaatc aggcgagcag acttcctcag aaggacctcg
      541 ggataatagg cgagcatctg tccagcctct agcagaacaa gctgaaagga tcacttcccc
      601 ggcggcttca aagagaaaac ctggggtatc acccctgctg gccagcccca gctacatccg
      661 gagcctacgc aaggctgaaa aacgaggtgc aaaagttccc aatccaagtg caaagcccaa
      721 ggctgcccag caaagcaaga ctggccccca gagccaactg tgcgacaagg cagctagttt
      781 catcgaggaa ctgacgtcca tatttagaga ggcagccaag ccaagaaaca gaagccctaa
      841 tggtgagtcc tcgtcaccag acagtgggta tctgtctcct aaaaatcagc catcaaccct
      901 gatgagtgcc tcagccagcc agagccccac tgcagaccag ctagaccaac tcgagatgga
      961 cgcagaggtc aagcaacccc agggcagcct ttgctaccag gcccacaagg ctccagaaga
     1021 gaccttgcca cacactcaca tcccgcaccc acagccccag aaagcccgcc acttgccatc
     1081 atctgcacct cgcttcatcc agaagctgag gagccaagaa gttgccgaag gaagcagagt
     1141 ttatttggag tgtagagtca ctggaaaccc agctcccaga gtcagatggt tctgtgaggg
     1201 gaaggagctg tacaactgtc ctgacattca gatccactgc gagggtgggg agctgcacac
     1261 cttggtcatt gctgaggcct ttgaggacga cacaggtcgc tacacgtgtc tggctacaaa
     1321 ccccagcggc tcagacagca catctgcaga ggtgttcatt gaaggagcca gttcaacaga
     1381 ctccgagagt gaaaactcat cttttggatc aaaagttgga gctatgccac aagctcagaa
     1441 gaaaacgacg tctgtttcct taacaatagg atcctcatct ccgaagacag gagtgaccac
     1501 agctgtgatt cagcccttat ctgtgcctgt ccaacaggtt cacagtgcta cttcgtatct
     1561 atgccgacct gacggaacca ccatgggctg ccttcttcct gtttttacta aggagctaca
     1621 gaacacagca gcatcggagg gtcaggtggt ggtgctggaa tgccgagtca gaggggctcc
     1681 cccgctgcag gtccagtggt tccggcaagg cagcgagatc caagactctc cagacttcag
     1741 aattctccag aaaaaaccga gatcaacagc tgaacccgag gagatctgca cccttgtcat
     1801 tgctgagagt tttcctgaag atgcaggcat atttacctgc tcagccagaa acgactatgg
     1861 atccgtgacc agcaccgcac agcttgtggt aacttcagcc aacaccgaga actgtagcta
     1921 tgactcaatg ggagaaccca acagtgatca cttccaacac tttccacctc cccctccaat
     1981 cctggagacg ggctcctatg agctggcatc acagaaaccg tctgaaatcc agcaggtgaa
     2041 cactcctaac ttaggattta acatggcagc tcttcaaatg caattcaact ctgcagagag
     2101 ggagaccaac ggagttcatc ccagccatgg agtcaatggg ctgattaatg gcaaagctta
     2161 tggcaataaa tctcctccaa caccagctgc cctgctttca cccactaagg aaccaccacc
     2221 tctccttgcc aaacccaaac tggatcctct gaagcttcag caactgcaga accaagtgcg
     2281 cctggagcag gaggcgtgcg cctggccccc tgcgcccccg ggtgtccctt gcaacagcag
     2341 cagcagcggc agtagcgcac caccgtctcc gcccttcccg ccaccgccac cagccttccc
     2401 agagctcgcg gcctgtgcgt cgccggtgcc ctcggagccc atgagcgcgc tagcctcccg
     2461 ctccaccgcc atgcagtcct ccggctcctt caactacgcg cgccccaagc agttcatcgc
     2521 ggcgcagaac ttgggtcccg cgtccgggct gcccacaccc acctccagcc ccagctcctc
     2581 cagtctgcca tcgccgctgt cccccacgcc caggccattc ggccgtgcgc ccgggcctcc
     2641 cttcgtggaa cccgaggcca tgtggggccc gtcctcgccc tcgccgccac cgccgccgcc
     2701 gccggtcttc agcccctcca ccgctttccc ggtgccggac gtgtttccgc tgccaccgcc
     2761 gccaccgccg ctgcccagct ccacctcgca ctgtgcctcg cctgcccgct tcagccctgg
     2821 ccagacacct gcagccttcc tcagtgctct gctgccttct cagcctccgc ctgtcgctgt
     2881 caacgccttg gggctgccca agggcgtcac ccccgcggga tttccaaaga aggccagtag
     2941 aaccgccaga atagcctctg acgaggagat tcaaggcacg aaggacgctg tcattcaaga
     3001 cctggaacgg aaacttcgct tcaaggagga ccttctgaac aatggccaac cgaggctaac
     3061 ctatgaggaa agaatggctc gccgcctgct cggtgccgac agcgcaaacg tcttcaacat
     3121 ccaggagcca gaagaaacag cagccaatca ggacgctggg gctcctcggg cttctgtagg
     3181 gggtcctctg gatggtcaaa aggagtacaa agtctccagc tgtgagcaga ggctgatcag
     3241 tgagattgag tacaggctgg agcgctctcc tgtggaggag acgggagatg aagtgcaaga
     3301 agccgaggtg cctgtggaaa acgcagcagc tcccttcttt gagatgaagc tgaaacatta
     3361 caagatcttt gaggggatgc ccgtgacctt cacgtgtcga gtggctggga gtccaaagcc
     3421 aaagatctat tggtttaaag acggaaagca aatttctcca aagagcgatc actacaccat
     3481 ccagagagac gttgatggga cctgctctct gcataccacg gcctctaccc tagacgatga
     3541 tgggaactac accatcatgg ctgccaacac tcagggtcgg gtcagttgta ccggacggct
     3601 gatggtgcag gctgtcaacc aaagaggccg cagtccccga tctcccccag gtcatcctca
     3661 tgccagaagg cctcgctctc gatcacggga cagtggagat gaaaatgagc ccattcagga
     3721 gcgattcttc agacctcact tcctgcaggc tcctggagac ctgacggttc aggaaggcaa
     3781 gctctgcagg atggactgca aggtcagtgg attaccaacc ccagatctca gctggcaact
     3841 agacggaaag cccatccgcc ctgacagtgc tcacaagatg ctggtccgtg agaatggggt
     3901 gcactccctc attatagagc cagtcacgtc ccgggacgca ggcatctaca cctgcatcgc
     3961 caccaacaga gcaggccaga actcatttaa cctggagctt gtggttgctg ctaaagaagc
     4021 acacaaggcc cctgtgttta tcgagaagct gcaaaacacg ggggttgccg atgggtaccc
     4081 cgtgcggctg gaatgccgcg tttcgggggt gccgccacct cagatattct ggaagaaaga
     4141 aaatgaatcg ctcactcaca gcactgatcg agtgagcatg caccaggata atcatggcta
     4201 catctgcctg ctcattcagg gagcaacaaa agaagacgct gggtggtata ccgtgtccgc
     4261 caagaacgaa gcaggcatcg tgtcctgtac tgccaggctg gatgtctaca cccagtggca
     4321 tcagcagcca cagaccacca agccaaaaaa agtacggccc tcagccagtc gctatgcagc
     4381 cctttcggac cagggactag acatcaaagc cgctttccag cctgaagcca gcccatctca
     4441 cctgacactg aacagcggct tggtagaaag tgaagacctg tgatcggcgc ccatgttgaa
     4501 gctgaaaact gaacgccatt gcttcgacca gcctactccg ctgtcacatt atgtgaaagg
     4561 cagaagtata ctgtcgactt acgaagttaa aaaaaaaaac aaaacaccaa aatcatattt
     4621 ttcttactta atagagagtc taagtaggtg atgcttatag aaatgtacac attgcacaga
     4681 aaactcacat ttattgtcca gtttaagact tttggaactg ctgtgattaa aatggtctga
     4741 aatgccaaaa tgccaaaaga aaccaactgt tcagaggtaa ccacaatgta tgttatctct
     4801 aagtgccttt aagcacaagg tataggtgct acagcatggc agtgtgaatg tttgacagat
     4861 acagtgactt tgaagcgcag tgtctacaga tggccccagt gaaccgcgtg caatatggag
     4921 ggacgagaaa gagaagggag gggaagtcag tcctaggaaa tgccttgcct ttgcaaactg
     4981 cttgtgttac atgggaaagg aggaaatcct tgccttaagt tccattcata tcagttttcc
     5041 ttgtatgtta ccttagctaa cttacaatct gtgttgaata aagggtcacc ttaaacttaa
     5101 agggttccgg agaaaacaga gttatattac agtccattcc acaagaggca tccaaaccac
     5161 gaccaaggca ggtagcattt agaggaggca ggtttggaag gcatgagggg aaggaaggaa
     5221 ttgctaccca catggggatc tcatatccat ttagatgaat gcatcagggc caggtcaggc
     5281 ttctttcttt ggttttcctc taaaccttaa aaacataggt gcagaaaaca ctgcggttaa
     5341 ccagtcaagg actctagggg aacacccaga agtctggagc gtgtgtgtgg tagagacttc
     5401 cctgtagctc aagggtgtag tagttgatga tgttagtatg tagagcaagt tggacatggt
     5461 tgaggtggca ggggtggcat atgagaagta gacagaaggg tctagtctgc ctaagggaga
     5521 aagagacttg agagacaaaa acaaaaacaa gagtgtgcta caacgaactt cttttccatt
     5581 ggcactagag gggctgggtg gaaatttcga gttcccgtca ccccctggct ccatggaatc
     5641 tagccttagg agagggccag gctctgagca tctgtaaggc cagctgcaaa gactgctttt
     5701 ggaatgcacg attctgcatc agctaaactg agttgaatct gaccagactt gatgacttta
     5761 agtcggaacc aatttttttt ctttttttaa gtgagagaaa ataatttggc ctgatagtgt
     5821 aatacatgag gctttaaagg tactttgcta tgaaaagaaa acactgtgtt tgttcctcat
     5881 caaaacctat ctattgttca ttatttataa aggtgttgaa ctttcttagc tcagttactc
     5941 aagtcataca tagttcttaa aacaatttta tatctgtaac caccccgtat tctttgtaat
     6001 actgcttcac atggtacagc tttctacttt tgtaagaaca ccaaccaaac aagttttagc
     6061 aggtttgaac actggggggg gaggggcaga tgttctgtgt agtgtggtac aagtctctga
     6121 ccacatacac attgctagtg ggggatttaa attactcatg gacctctctc tgttgtacaa
     6181 tttcagccta tatcatatca gaattgccaa gtttttctga atgtgacttt tttttttttt
     6241 tttttttttt ttgctaattt gctgggcttg ggattaactc gcattctttt gccacctttt
     6301 atgttgtatt tatgaaaaaa caaaaaaaca aaaaaaaggt agtaccatac tttggattgt
     6361 tgtgctgttg taatatggac ttaacatcaa taaataaata tttaacagat ggca
//
