LOCUS       NM_001034128            4213 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus phosphatase domain containing, paladin 1 (Pald1),
            mRNA.
ACCESSION   NM_001034128 XM_238205
VERSION     NM_001034128.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4213)
  AUTHORS   Gungor-Ordueri,N.E., Celik-Ozenci,C. and Cheng,C.Y.
  TITLE     Fascin 1 is an actin filament-bundling protein that regulates
            ectoplasmic specialization dynamics in the rat testis
  JOURNAL   Am J Physiol Endocrinol Metab 307 (9), E738-E753 (2014)
   PUBMED   25159326
  REMARK    GeneRIF: Data suggest that fascin 1 is involved in localization of
            actin-bundling proteins paladin and Eps8 (EGF receptor pathway
            substrate 8) during spermatogenesis; thus, fascin 1 regulates
            cytoskeletal filaments in Sertoli cells and in spermatid polarity.
REFERENCE   2  (bases 1 to 4213)
  AUTHORS   Wallgard,E., Nitzsche,A., Larsson,J., Guo,X., Dieterich,L.C.,
            Dimberg,A., Olofsson,T., Ponten,F.C., Makinen,T., Kalen,M. and
            Hellstrom,M.
  TITLE     Paladin (X99384) is expressed in the vasculature and shifts from
            endothelial to vascular smooth muscle cells during mouse
            development
  JOURNAL   Dev Dyn 241 (4), 770-786 (2012)
   PUBMED   22354871
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Aug 28, 2008 this sequence version replaced NM_001034128.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.57845.1,
                                           SRR26643429.57838.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-188               JAXUCZ010000020.1  29849034-29849221   c
            189-291             JAXUCZ010000020.1  29846099-29846201   c
            292-471             JAXUCZ010000020.1  29843862-29844041   c
            472-636             JAXUCZ010000020.1  29843147-29843311   c
            637-797             JAXUCZ010000020.1  29841305-29841465   c
            798-873             JAXUCZ010000020.1  29841075-29841150   c
            874-1025            JAXUCZ010000020.1  29840183-29840334   c
            1026-1125           JAXUCZ010000020.1  29839839-29839938   c
            1126-1230           JAXUCZ010000020.1  29839541-29839645   c
            1231-1326           JAXUCZ010000020.1  29836854-29836949   c
            1327-1455           JAXUCZ010000020.1  29836402-29836530   c
            1456-1572           JAXUCZ010000020.1  29835861-29835977   c
            1573-1728           JAXUCZ010000020.1  29835622-29835777   c
            1729-1911           JAXUCZ010000020.1  29835171-29835353   c
            1912-2052           JAXUCZ010000020.1  29834067-29834207   c
            2053-2124           JAXUCZ010000020.1  29833772-29833843   c
            2125-2265           JAXUCZ010000020.1  29830553-29830693   c
            2266-2421           JAXUCZ010000020.1  29816427-29816582   c
            2422-4213           JAXUCZ010000020.1  29812650-29814441   c
FEATURES             Location/Qualifiers
     source          1..4213
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q11"
     gene            1..4213
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /note="phosphatase domain containing, paladin 1"
                     /db_xref="GeneID:294508"
                     /db_xref="RGD:1305933"
     CDS             1..2574
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /codon_start=1
                     /product="paladin"
                     /protein_id="NP_001029300.2"
                     /db_xref="GeneID:294508"
                     /db_xref="RGD:1305933"
                     /translation="MGTTASTAQQTVSAGTSLEGLQGSGSSMDGQHSLGVQSFHATSL
                     HNSKAKSIIPNKVAPVVITYNCKEEFQIHDELLKAHYRMGRLSDATPEHYLVQGRYFL
                     VRDVTKKMDLLGTLESCGAPNFRQVRGGLPVFGMGQPSLLGFRRVLQKLQKDAIKECI
                     IFCVREEPVLFLRAEEDFVSYTPRDKESLHENLRDPGPGVKAENLELAIRKEIHDFAQ
                     LRENVYHVYHNTEDLHGEPHTVAIRGEDDVHVTEEVFKRPLFLQPTYRYYRLPLPEQG
                     APPEAQFDAFVSVLRETPSLLQLRDNHGPPPALLFSGQSGVGRTNLGMVLGTLVMFHY
                     SRTTSQLEAASLLSKPLPMEQFQVIQGFIGRVPQGKKMVEEVDRAISACAELHDLKEE
                     LLKNQRKLEGFRPERLEQECGSQHSVQQRALWSLELYFYLILFNYYLHEQYPLAFALS
                     FSRWLCTHPELYRLPVVLNSVGPLVPGDLIAQGSLEADDLVSLDALSTVREMDVANFR
                     RVPRMPIYGTAQPSAKALGNILAYLSDAKRKLRQVVWINLREEVVLDCDGHTHSLWLP
                     GPTLAPKQLEDLEAQLKAYLSAPVPNTKSPTTPRFQKCLTTQEVFSQHQGACLGLTYC
                     RIPVPDFCAPREEDFDRLLEALQAALTKDPGTGVVFSCLSGQGRTTTAMVVAVLACWH
                     IRGCPEVGEEELVSVPDAKFTKGEFQVVMKVVQLLPDGHLVKKEVDAALDTVSETMTP
                     MHYHLREVIISTYRQAKATKEAQEAQRLQLRSLQYLERYIYLILFNAYLRLEKASSWQ
                     RPFSTWMREVATKAGIYEILNQLGFPELESMEDQPLSRLRYRWQEQSQDPEPYDAGDF
                     L"
     exon            1..188
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            189..291
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            292..471
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            472..636
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            637..797
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            798..873
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            874..1025
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1125
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            1126..1230
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            1231..1326
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            1327..1455
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            1456..1572
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            1573..1728
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            1729..1911
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            1912..2052
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            2053..2124
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            2125..2265
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            2266..2421
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
     exon            2422..4213
                     /gene="Pald1"
                     /gene_synonym="Pald"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgggtacaa cggcaagcac agcacagcag acagtctcgg ctggtacgtc cttggagggt
       61 ctgcagggca gtggcagcag catggacggc cagcattctc tcggtgtgca gtcctttcat
      121 gccacaagtt tacacaacag caaggccaag tccatcatcc ccaacaaggt ggcccctgtt
      181 gtgatcacgt acaactgcaa ggaagagttc cagatccatg atgagctgct caaggcccat
      241 tacaggatgg gccggctctc agatgccaca cctgagcact acctggtgca gggtcgctac
      301 tttctggtgc gtgatgtcac caagaagatg gacctgctgg gtaccttgga gagctgtggg
      361 gctcctaact tccgacaggt tcggggtggg ctccctgtgt ttggcatggg acagcccagc
      421 ctcttggggt tcaggagggt cctgcagaaa ctccagaagg atgcgatcaa ggagtgcatc
      481 atcttctgtg tacgggagga gcctgtgctg ttcttgcgcg ctgaggagga ctttgtgtcc
      541 tacacacctc gagacaagga gagccttcat gagaacctca gggaccctgg gccgggggtc
      601 aaggctgaga atctggagct ggccatccgg aaagagatcc atgactttgc ccaactgaga
      661 gagaacgtgt accacgtgta tcacaacaca gaggacctgc atggggagcc gcacacggtg
      721 gccatccgag gtgaggatga tgtgcacgtg accgaggagg tgtttaagcg gccgctgttc
      781 ctgcagccca cctacagata ttaccgtctc cccttgccgg agcaaggggc ccccccagaa
      841 gcccagtttg atgcctttgt cagtgttctt cgggagaccc ccagccttct gcaactcaga
      901 gataaccatg ggcctccccc tgctctcctg ttcagcggcc agtcaggtgt gggcaggacc
      961 aacctaggca tggtcctggg taccctcgtc atgttccact acagtcgaac cacctcacag
     1021 ctagaggcag cctccctgct gagcaaaccc ctgcccatgg agcagtttca agtgatccaa
     1081 ggcttcatcg gcagggtgcc ccaggggaag aagatggtgg aggaggtgga tcgagccatc
     1141 agtgcctgtg cagagttaca tgacctgaag gaagagctcc tcaaaaacca gaggaagctg
     1201 gaaggtttta ggccagagag gctggagcag gaatgtggta gtcagcattc tgtccaacag
     1261 agggcgctgt ggagcctgga gctgtacttc tatctgatcc tgtttaacta ctatctgcat
     1321 gagcagtacc ccctggcctt tgccctcagt ttcagtcgat ggctgtgtac gcatcctgag
     1381 ctgtaccgtc tgccggtggt gctgaattca gtggggcctt tggtccctgg ggacctcatc
     1441 gcccagggct ccctggaagc agatgatctt gtttccctgg atgcgctcag cactgtcaga
     1501 gaaatggatg tagccaactt ccggcgtgtg cctcggatgc ctatctatgg caccgcccag
     1561 cccagcgcca aggccctagg caacatcctg gcctacctgt ctgatgccaa gaggaagcta
     1621 cggcaggtgg tctggatcaa cctgagggag gaggttgtgc tggactgtga cggtcacaca
     1681 cacagcctgt ggctccccgg accaaccctg gcccccaagc agctggagga tttggaggcc
     1741 cagctgaaag cctacctgag tgctcctgtc cccaacacca agagccctac cacccccagg
     1801 ttccagaagt gcctgaccac acaagaggtc ttcagccagc accagggggc ctgccttggc
     1861 cttacctact gccgcattcc tgtgccagac ttctgcgccc ctcgggagga ggactttgac
     1921 cggctgcttg aggccctgca agctgccctc acgaaggacc caggcacagg cgtggtcttc
     1981 agctgcctca gtggccaggg tcggaccaca actgccatgg tggtggccgt gctggcctgc
     2041 tggcacatca ggggctgccc cgaggtgggc gaggaggagc tagtgagtgt gcctgacgcc
     2101 aagttcacca agggcgaatt tcaggtggtg atgaaggtgg tacagctgct gcctgacggc
     2161 cacctcgtga agaaggaggt ggacgcggcg ttggacactg tcagcgagac catgacaccg
     2221 atgcactacc acctgcggga ggtcatcata tctacctacc gacaggcaaa ggccaccaaa
     2281 gaagcacagg aggctcagag gttacagctg aggagtctgc agtacctgga acggtacatc
     2341 tacctgatcc tctttaatgc ctaccttcgc ctggagaaag ccagctcctg gcagaggcct
     2401 ttcagcacct ggatgcggga ggtggcaacc aaagctggca tctatgagat cctcaaccag
     2461 ctggggttcc ctgagctgga gagcatggag gaccagcccc tgtcaagact ccgttaccgg
     2521 tggcaagagc agagccaaga cccagagccc tatgatgctg gggacttcct ttaggcctcc
     2581 tccttgctcc ttgctagaca ggttggggga cctgagggtc tcattgcttc agatggacac
     2641 ttgccagctt cctggtgaga cttgaggggc tgagagcctt tggaaagagg gttttttttt
     2701 gtttgtttgg gttttttttt tgttttttgt aggatgtgta gatgacgcca ccattttctg
     2761 tcaaccctct gggtgtgtaa tggcctctgc ctgtacctca cagaccagct ggcaaacagc
     2821 aaacagcttt cagggagctc gctccccaaa cagtcagtca ccacctccgt ccccttttca
     2881 ctgcctgagt tggcagtggg ctggtcgtgt ttgtatgttc acttccttcc tctggctggc
     2941 ttgctcttgt ctctcagtct ttcagatcaa ggagctgtct gaggtaggtg aggaggatgg
     3001 tgagccggtc aggtccgtgt taaaggcagc tctgcttggt ttcttctggt tcgtgagtgt
     3061 cgcgggcctg gaagactttc cccagttcct tcacctaagc tggcagatgt gtccagggag
     3121 tttagaaacc agggagacga tctcagtgtg gggaaagaac tcacagacac cattgagaca
     3181 gtgaagaggc gtgatcatgt gttggaacct gttagcagga tcaaggtgac tcttggaaga
     3241 gattctcgtg gactcaggcc gtggtggctc gtcaggcctt agggtccagg ccacccctgc
     3301 caggatccct gggcttcttt cactgggaca cttgggacac cgctgagtta ctaacagctt
     3361 tgtttacaca gtaggaagag gggcatagag agctgtgcct ctatggtgag cctctgggac
     3421 tgaagtttgc cacgactagt ggttggacac ctgggaggct ggctacctac ctgtcttact
     3481 ccctgaagga cagggttgaa tctctgggtt ccagtccttt agggagatgg agtacctgtc
     3541 tgtcagctgc tggctgtgct ttttgaagag gccaaagttg tttccagcct ctcagctgaa
     3601 ttcttttgca agctgctgta tgtctgctca cggcttctca ggtttgctgg tgcctgcttt
     3661 gtgcaagtca gttcttttct gaaaaggtct agccaaggag tcagagacca gagagaccct
     3721 tcatactctc gtgactgaca ctgacttgga gatatgctgg gaccagtggc agatcacttt
     3781 acccccctgc ctcagtttcc ccgtctgtaa aattggagaa taatacttgc ctacctacct
     3841 cacaggggtg ttgtgaggaa tcctttatgt tttttgggtt tttgtttttt tttttttttg
     3901 tacagagctt ttggcattaa aaacagtgta aacatgagtg tgctgcgttg ctgattggtc
     3961 tttagtatga gacagacatg gaagccaggt ggataaatgt gtctcccaga gtaagggtgg
     4021 atgcaggcga acggaatgtc cttgttacca gcacccgtga tgtttggagg ctgcgggtgt
     4081 tccagatgtc acttcctcct tgtcatcagt cacagcctac catcttatac tgaggtagcc
     4141 gtgctgaccc ctgcttgaat aaacaccgtc tactgtcagt caagagaacg caccagggct
     4201 ggagagatag ctc
//
