LOCUS       NM_001399545            3298 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus poly(A) binding protein interacting protein 2B
            (Paip2b), mRNA.
ACCESSION   NM_001399545 XM_232121
VERSION     NM_001399545.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3298)
  AUTHORS   Berlanga,J.J., Baass,A. and Sonenberg,N.
  TITLE     Regulation of poly(A) binding protein function in translation:
            Characterization of the Paip2 homolog, Paip2B
  JOURNAL   RNA 12 (8), 1556-1568 (2006)
   PUBMED   16804161
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jan 12, 2022 this sequence version replaced XM_232121.8.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.2005943.1,
                                           SRR26360181.1810330.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676810 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-111               JAXUCZ010000004.1  117880896-117881006 c
            112-169             JAXUCZ010000004.1  117880501-117880558 c
            170-317             JAXUCZ010000004.1  117857794-117857941 c
            318-494             JAXUCZ010000004.1  117853701-117853877 c
            495-3298            JAXUCZ010000004.1  117849625-117852428 c
FEATURES             Location/Qualifiers
     source          1..3298
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..3298
                     /gene="Paip2b"
                     /gene_synonym="RGD1307930"
                     /note="poly(A) binding protein interacting protein 2B"
                     /db_xref="GeneID:312490"
                     /db_xref="RGD:1307930"
     exon            1..111
                     /gene="Paip2b"
                     /gene_synonym="RGD1307930"
                     /inference="alignment:Splign:2.1.0"
     exon            112..169
                     /gene="Paip2b"
                     /gene_synonym="RGD1307930"
                     /inference="alignment:Splign:2.1.0"
     CDS             141..551
                     /gene="Paip2b"
                     /gene_synonym="RGD1307930"
                     /codon_start=1
                     /product="polyadenylate-binding protein-interacting
                     protein 2B"
                     /protein_id="NP_001386474.1"
                     /db_xref="GeneID:312490"
                     /db_xref="RGD:1307930"
                     /translation="MTTLNTGSARISIMNGSSVASTSPSVKCKEDQGLNGHEEKENPF
                     AEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQ
                     LNGLSVGDSHESEDILSKSNLNPDAKEFIPGVKY"
     exon            170..317
                     /gene="Paip2b"
                     /gene_synonym="RGD1307930"
                     /inference="alignment:Splign:2.1.0"
     exon            318..494
                     /gene="Paip2b"
                     /gene_synonym="RGD1307930"
                     /inference="alignment:Splign:2.1.0"
     exon            495..3298
                     /gene="Paip2b"
                     /gene_synonym="RGD1307930"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcgtgtga ggccaaggta cctcgagcgt ttgtgcgccg tggctcgcgc tctcaggagg
       61 cggcgctgtg ctgtggtaca gacctcgggg cggcgttgtc cgcgcggcca ggcacctggg
      121 agggtgaagg cgagaggcag atgacgacgc tgaacacagg ctctgcaaga atctccataa
      181 tgaatggatc cagtgtggca agtacatcac ccagtgtgaa atgcaaagag gaccaagggt
      241 taaatggaca tgaggagaaa gaaaaccctt ttgcagaata catgtggatg gaaaatgaag
      301 aggatttcaa cagacaggtg gaggaagagc tgcaggagca agacttcttg gaccgatgct
      361 tccaggagat gctggatgaa gaggaccagg actggttcat cccagcacga gacctgcctc
      421 aggctgtggg acacttacag cagcagttaa atggactatc agttggtgac agtcatgaat
      481 ctgaagacat tttgagcaaa agtaacctga atccagatgc caaggagttt attccaggag
      541 tgaagtactg agctgttgga agcttccaga aggacttgtc ttgtccccgt acctggggcc
      601 agcaatgcac aaaaaggcgg agctgaaggg gggtggcaag ggtgtgcagc cagggcgggt
      661 tgggttggga aggtggctta actggatatt gtgactgagt aactaatgtg cgaggtacta
      721 ctctccaagc ctgagcatgg ctcttctctt gtgctgactt gctcagagca gtttccaatt
      781 ttactttatt tttgatgagc tctttggagt taaggaactg cagttgtttt tcccttgtaa
      841 ggaatgttgt ctgcatttta gcaaaataag ctgaccaaga aaaacagtat ttaagaaata
      901 attttccctg ctgtgtacct accaggagca gggtacctgg agagtttaag gagtttgcag
      961 ctgggtagta gagggaaaaa caggagatac aaaccagata cagcactcag ctccccatcc
     1021 cctgacattt ccatgatgaa ctgggatacc agtggcccat aaagctcttg tctcctgtcc
     1081 tgaactcaag agaaaacaga tttgaaagtt cttggatgaa tgtaactttg gatggatgtg
     1141 agttgtacat caggaaagca gggcttgatg gtgactcatt tagtgactgc tgtcctgtcc
     1201 tcagtgtata gctgctgtca ctcatctggg ttgctttgcc ttcatgatct tcataggggc
     1261 tgcttctggc tcttttcccc ctcagctcta aaagacacta ttagtcaaag tctgcaatgg
     1321 gcctttagct gtgttaatta catcttgaat ctttttggac agttttgttt tcctaagtcc
     1381 cttcagtatc tgattcttat gatgtcttaa ttcccttaaa ttttctgctt tttttttttt
     1441 ttttttcaag gaaatacatg tttccagaca ctagcaagct gcttagttca gtttgggtgt
     1501 ttcttatgcc ttccagagtg attcccagaa actgagctgc tgcgcggccc cacccaagtg
     1561 cacaagaccg ggctttctgt gtacatgaag ctgttactag gtgttactgc ttccacagac
     1621 caacctctct agtttcctca tggtcctgtc tggtgcactc ttagttctac ttgtcactca
     1681 ctaaggtttt tgttgatact ctgtggaact gaatcttacc aagagctgct gctatgagta
     1741 gaggtgaggt ggtcgtgtct gagggtgaaa gaacaagtgt cctgtcctga tcatactcca
     1801 aggacaaggg acttgggagg attgatagtg ctgtgacttc tgtgtggcta tcactgtgct
     1861 gtatgatagg tctggaaaga tcatgcagct tccagtagtt cgtcagatca gcatgtagat
     1921 atgggcagag actggaagga aaggactgcg gtctggaaag ttgttcccct tttcaaatgg
     1981 actggtttgc tgagtttcca ttttgtcttg gtgccatgga tagaacccag agtctcactt
     2041 gtgccaggtt agtcctaccc tttagctgtt ctcaaccctc ccttgatttg aacacagtcc
     2101 cagcagttaa aaaagtccct ctttttcctg tttgagtctc ataagatggc atcttgtgaa
     2161 agtggcctcc cactcatgtc acatcttagc agctcaggga acttgtatca attcccaaaa
     2221 cctcgccatc aagagagaat gaaactagga actccttctg aaaggacttt attcctgctt
     2281 aagcttttag cttggcttgt cacctcttat aagaagaaag ggagggtatg ggtaggacat
     2341 tcaaaaagat tctcttgtag tctccatgag atcaaaattt atcaggattg caggaagatc
     2401 cttgagaatc tttgtctcca tagtgcacct ttctctgagt acccgtctgg gaagcttatg
     2461 caagcctgag gtgtctttgt tccatcctta agttttgctc tttggaagct aagctgctag
     2521 gagtggtcca agaggctggc ctccctccct gtgctggctc ttttatttgg atgtcatttt
     2581 ctagcctggt ttcaggggtg tgtgctgttg ggtatacctg gaattcaagg gctggtgtgt
     2641 tgagtccacc tcagaggcaa ggtactgtag gcttgggatg cagccaatga actggttctt
     2701 agtaatttat ggaaagactt attcctgtga cccaactctt ctaccgtcca atgttgtgag
     2761 gaagcacagt tgtaccctag actacagact cagccccaat tatgagtttt aggttgtttt
     2821 tggaattctc aaactcaaat tgctatataa attcttatac agcaatagaa agcattctaa
     2881 atagttgcta gtctggctgg tcacagtatc catttattag agactgagtt ctgtgattat
     2941 ttgaccttat taacttgggg gggggtgcct cttcatgaat tttggactgc atcacaaatc
     3001 tgaggtagcc aaagccttgg tactgtagct cagggtcagg accagtttct atctgtagtg
     3061 tacctgactt gaggttatca tataaacaag ccagaagata ctcagaagat tgggtctttt
     3121 ttattgaacc caggccctca catgtgctat gcaagcacta caccaagctg tattccaggc
     3181 ctgctaaagg ctgagactgg ggtagcattc ctatttccaa agtcacatga cctatgattg
     3241 cttcattaag attgtaaggt taaccatggc ttaaaaataa atggttttgg tgaactaa
//
